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DottaandPaperclip 9efee7ee16 fix(runtime): save dynamic skill bundles before native admission (#19729)
## Thinking Path

> - Paperclip manages agents, tasks, and their saved execution state.
> - A replacement server must restore each admitted skill from shared
storage.
> - Installed company skills already have immutable versions.
> - Connector skills add assigned resources and tool definitions for
each run.
> - Those dynamic bytes keep a null version ID and differ from the
static skill.
> - Native admission saved their input before it saved a durable package
receipt.
> - This change stages the exact packages first and publishes the input
and receipt together.
> - A new connector turn can then survive an empty server home.

## Linked Issues or Issue Description

Refs #19675 for the existing runtime asset preservation owner.

**What happened?**

A new native run with an assigned Slack connector creates a concrete
local skill bundle after the old runtime assets were migrated. Admission
saves its execution input without a preservation receipt. The new run
creates a local durability dependency again.

**Expected behavior**

With S3 configured, the exact dynamic bundle must be durable before the
execution input becomes visible. Its null version ID and admitted bytes
must remain unchanged. Local storage must keep its volume-backed
behavior.

**Steps to reproduce**

1. Configure S3 and a native agent with an assigned Slack resource.
2. Prepare a new native task through the normal runtime selection owner.
3. Inspect its runtime skill receipt or restore its skills with an empty
server home. The previous owner saved no receipt.

**Paperclip version or commit**

Reproduced on master `d1ee25d0f7`. The fix is tested on `4a3396d9b9`.

**Deployment mode**

S3-configured server. Local tests use PostgreSQL 18.1 and a private disk
transport with the S3 receipt contract.

## What Changed

- Extend the existing runtime asset owner with package staging and
transaction-bound receipt validation.
- Stage exact unversioned skill packages before native admission. Keep
storage I/O outside the run transaction.
- Publish the frozen input and receipt together under the existing run,
cancellation, and package collection locks.
- Reject changed input bindings and retired package metadata.
- Reuse valid same-run receipts without reading the previous host's
bundle path or requiring a new object read.
- Keep existing online preservation and local storage behavior.
- Add a bounded preparation span and document its work.

## Verification

- Genuine unchanged-production RED: the actual Slack overlay and real
admission transaction save no preservation receipt.
- Final rebased head: 68 tests pass in three suites in 25.36 seconds.
These include all runtime-selection, runtime-preservation, and connector
controls.
- The new positive checks that no execution input or coordinator is
visible during package readback. It restores exact skill and tool bytes,
modes, digests, and null version IDs in a cold home.
- Guards cover an uncertain storage failure, cancellation during upload,
a changed binding, retired package metadata, and local mode. An existing
receipt remains usable after removing the original bundle and during a
storage outage.
- The canonical PostgreSQL wrapper uses one owned disposable PostgreSQL
18.1 container. Each suite's database is cleaned up. Real package
archives, streams, and readback run locally; no external provider or
model is called.
- Strict server TypeScript, module boundaries, changed-line private-data
checks, and `git diff --check` pass.
- [Final-head
CI](https://github.com/paperclipai/paperclip/actions/runs/42337473062)
passes all required build, typecheck, test, and Runner gates. Fresh
Greptile is 5/5 with no open review threads.

## Risks

New S3-backed admission now requires its dynamic packages to be saved
before execution can proceed. A storage failure can therefore stop
preparation. Existing resource cleanup keeps its authority. Failed or
cancelled staging retains original files and the package owner's pending
receipts. Same-run recovery retains its original capture provenance and
cache behavior. The tests replace the external S3 transport; they do not
qualify live S3 permissions or provider execution. No schema, API,
workflow, company skill version, or provider protocol changes are
included.

## Model Used

OpenAI Codex (GPT-6 family; the exact runtime model ID and context
capacity are not exposed in this session), with reasoning, repository
editing, code execution, and tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 22:34:44 -06:00
DottaandPaperclip a3eecf1fc9 Preserve admitted runtime skill bundles during server replacement (#19675)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Native runs keep the exact skill files admitted for execution and
recovery.
> - Older inputs can name immutable local bundles without a skill
version ID.
> - Installed skill heads alone do not preserve those admitted bundles.
> - Server replacement needs a durable source for each retained bundle.
> - This pull request copies authenticated bundles through the existing
package owner and restores their exact projections.
> - The benefit is preservation during online migration without stopping
active work or settling recovery warnings.

## Linked Issues or Issue Description

Refs #19656. Related: #19660.

**What happened?**

Older native execution inputs can contain skill bundles with a null
version ID. Recovery skips those bundles. Startup installation checks
can pass even when those retained inputs still require the old
filesystem.

**Expected behavior**

Preserve each retained admitted bundle in object storage. Restore its
original bytes, modes and digests on an empty replacement host. Keep its
null pin and all run, controller and recovery state. Block startup and
enrollment while a concrete local asset obligation remains.

**Steps to reproduce**

Retain a native run with an admitted local skill bundle and a null
version ID. Convert its installed skill head to durable storage. Replace
the server home and attempt recovery. The old bundle path remains in the
recovered context.

## What Changed

- Add a bounded `runtime-assets` phase to the existing skill package
maintenance CLI. It copies exact admitted files under the runtime asset
publication lock, verifies the durable package, and appends a run-bound
receipt after source revalidation.
- Keep original files, null pins, task intent, warnings and controller
leases. Support an active run through copy-only preservation. Do not
start a turn or claim provider ownership.
- Verify and reuse a healthy canonical local bundle before storage
reads. Restore missing or damaged bundles through the existing package
and native asset materializers. Use the authenticated original manifest
to preserve exact read and execute modes. Accept a later contract
revision only when the run binding and exact skill selection remain
unchanged.
- Check retained recovery obligations and current task sessions during
both startup and migration eligibility. Ignore ordinary admission that
has no completed execution input.
- Protect receipt-backed packages from orphan collection. Serialize
receipt publication and deletion on the package row, then check
references in a fresh statement after the lock.
- Add real PostgreSQL and filesystem regressions. Replace a
delete-method proxy with an actual upload-renewal row-lock race. Publish
mutation activity only after commit.

## Verification

- Baseline production startup gate failed the new concrete-asset
regression as expected. The fixed gate passed. The actual before-fix
preservation owner also failed recovery from a healthy local bundle
during a simulated storage outage. A verified local-first path fixes
that regression.
- Eight preservation tests passed with real PostgreSQL, streaming
storage, archive extraction and native materialization. They cover cold
recovery, exact modes and binary bytes, active ownership, changed
sources and bindings, contract revisions, missing or corrupt receipts,
and publication/collection races.
- Six affected package collection/deletion controls and three existing
startup controls passed. The existing versioned recovery consumer passed
a sequential retry.
- One fixture attempt failed on its cleanup foreign-key order; the
fixture was corrected. One existing suite hit its unchanged 30-second
database startup hook before test execution. The unchanged single
consumer passed on retry. These failures remain recorded.
- Source, changed-test and CLI TypeScript checks passed. Rebase
preserved both the local instruction-copy and runtime-asset guards.
Current-head changed-test checks passed. Final PostgreSQL rerun passed
all eleven preservation/startup cases. Current CLI check passed.
Required CI remains pending at the trusted-runner gate.
- Current canonical bundled creation uses package preparation plus
atomic content/head publication. Native preparation requests immutable
version snapshots before delivery. Converted installations and new
canonical bundled creation therefore do not recreate the historical
null-version asset dependency.
- Fresh Greptile review on exact head
`54c7dd048c9016c1af9fc68213d5ae053ac16499` passed at 5/5 with zero
unresolved threads.
- Module boundaries, whitespace, and credential/internal-reference scans
passed. No live source writes, provider actions or migration apply were
performed.

## Risks

Missing, changed or unsafe local files remain blockers. This command
does not repair a previously published package whose objects later
disappear or become corrupt. It also refuses malformed preservation
receipts. It retains the original local files and prior evidence and
keeps removal blocked. Automatic repair requires a separate canonical
package-owner recovery operation; direct database edits are not an
accepted recovery path. Failed publication keeps the original files and
any unreferenced package for normal collection. The readiness check is
explicit startup or enrollment work, not a background scan. Its cost
grows with retained admitted asset obligations. Older readers must be
upgraded before the old volume is removed. This change preserves asset
bytes; it does not settle business recovery or qualify unrelated volume
dependencies.

## Model Used

OpenAI GPT-6 (Codex). The runtime did not expose a more specific backend
model ID or context-window size. Used reasoning, code editing, and tool
execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-06 18:23:53 -06:00