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DottaandClaude Opus 5.5	5a51a7685d	fix(budgets): raise_budget_and_resume continues the work its budget stopped, once (#20144 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A budget hard stop cancels the scope's running work; the board resolves it with Raise budget and resume > - In the restart-chaos H1 scenario, the cancelled tasks did not continue after resume and each needed a manual Retry > - Resume is the board's explicit decision to continue, so the work it stopped should continue once, as if the board clicked Retry > - This pull request files that Retry automatically, keyed by the cancelled run, once the run's stop has settled > - The benefit is that a budget raise restores the work without manual Retries, without repeating completed work, and without charging the run's attempt budget ## Linked Issues or Issue Description Refs #20143 (bug B; this PR builds on it), #20113 (bug A), #20101 (superseded: split into #20143 and this PR) What happened? Restart-chaos waves w-20261108T195944-s42 and w-20261108T210118-s9802 (H1). After `raise_budget_and_resume`, CHA-3's budget-cancelled run (enforcement stop) and CHA-1's run (agent lifecycle pause from the budget hold) stayed cancelled until someone clicked Retry. Expected behavior Resuming continues each task its budget stopped, exactly once, with no attempt charged, an activity entry, and no repeat of work that already continued. A run a person stopped stays stopped. Steps to reproduce Set a budget below spend while a task runs; let the stop cancel the run; resolve with Raise budget and resume. Before this change, no new run is queued. ## What Changed - New table `budget_resume_claims` (migration 0451). One row per cancelled run, outside the run's result JSON, so a Stop that settles during the resume cannot erase it. - `markBudgetCancelledWorkForResume` (called by `resolveIncident` before the incident closes): claims every task run its budget stopped since the incident opened. That covers runs budget enforcement fenced, including stops still in flight, and runs the agent lifecycle pause stopped for this budget (`pauseStop`, carried from the lifecycle operation's `pauseCause` so a resume before the Stop keeps the link). Runs a person stopped are excluded. Two indexed passes led by `(company_id, status)`. - `deliverBudgetResumeContinuations`: once a claimed run's stop settles, files the resolving board member's Retry (`requestTaskRetry`, idempotency key `budget-resume:<run>`, with the member's session source and the chat Retry callback). The Retry path checks, under the task lock, that the run is still the task's latest and the task is open, so continued or completed work is never repeated. Claim settlement and its activity entry commit together; retryable refusals and errors retry. - Delivery runs in the always-on budget-enforcement worker after each pass's Stop delivery. Its schedule includes deliverable claims and the earliest stale-claim expiry. The execution-continuation worker is a backstop. - `agent.paused` / `agent.resumed` logging is in #20113. `budget.cancelled_work_resume_requested` (incident) and `budget.cancelled_work_continued` / `_not_continued` (task) are recorded here. ## Verification - New `budget-resume-continuation.test.ts` (Postgres, real `resolveIncident` → claims → `requestTaskRetry` → real `resumeTaskRetry` into a queued run): - each task continues once, including a blocked task; repeat delivery or resolve saves nothing new; - a stop still in flight at resume, whose terminal write replaces the result JSON, is still continued; - a 30-task scope is fully continued; - a lifecycle-pause stop caused by the budget is continued, and one caused by a manual pause is not; - continued work, done tasks, a run that finished before its stop, and person-stopped runs (including ones enforcement also fenced) are not continued. - `lifecycle.test.ts`: the pause records its cause on the operation and on stopped runs, including when the budget is resumed before the pause's Stop. `budget-enforcement-worker.test.ts`: delivery after Stop delivery, and a wake at claim expiry. - 287 tests across the affected suites passed. Server typecheck (`typecheck-layers`, low-memory): no errors. - Not run: the H1 chaos rerun (Phase 3 runs it after merge). ## Risks - Resume now continues budget-stopped tasks automatically. A board that wants a task stopped can Stop it again; person-stopped runs are never continued. - A new table and one index (migration 0451). > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, test execution). Extended reasoning enabled. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-08 22:56:28 -06:00
DottaandClaude Opus 5.5	c49ab6b9ee	feat(issues): wake the parent once when a child or blocker stalls on the board (#20098 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A parent task delegates to children and waits on blockers. Its agent learns of progress only through wakes > - Today only completion (`issue_children_completed`) and resolution (`issue_blockers_resolved`) wake a waiting issue > - In restart chaos `w-20261108T181313-s9701` t05, a blocker stopped on a recovery action that needs the board, and its parent sat silently blocked for 50+ minutes > - This pull request wakes the waiting agent once per such stall, tells it what it can do, and shows the stall on the parent's page with the child's Retry > - The benefit is that a stuck child or blocker no longer silently strands its parent ## Linked Issues or Issue Description Refs #19831 (durable ownership plan; restart chaos campaign). Restart chaos wave `w-20261108T181313-s9701`, task t05 (M1, claude). Problem From the kept database: - CHA-8 `blocks` CHA-5. - CHA-8's board-owned recovery action (`native_session_retry_exhausted`) was created at 18:44:02.909 and resolved with outcome `blocked` at 18:44:08, when CHA-8 moved to `blocked` for the board. - CHA-5's only wake in the whole wave was its `issue_assigned` at 18:20:48. Its agent never heard about CHA-8. Expected behavior - When a child or blocker stalls on the board, the waiting agent is woken once. It can then re-delegate, escalate, or block with a reason. - The board sees the stall on the waiting task, with the child's Retry. ## What Changed - Shared: - `ISSUE_BLOCKER_STALLED_WAKE_REASON` (`issue_blocker_stalled`), `ISSUE_BLOCKER_STALL_RELATIONS`, and the types `IssueBlockerStallRelation` and `IssueBlockerStalledWakeContext`; - `Issue.stalledDependencies`. - Server, `services/recovery/blocker-stall-wakeups.ts`: - A stall is an issue that is not done or cancelled, whose latest recovery action needs the board. That means either open (`active`/`escalated`) and board-owned or escalated, or board-owned and resolved as `blocked` while the issue is still `blocked`. The second case is what t05 needed: recovery resolves its action that way when it hands the issue to the board. - Waiters are the parent, and every issue the stalled one `blocks`, when they are open, visible and agent-assigned. - Each waiter gets one wake per stall. The idempotency key `issue_blocker_stalled:{waiter}:{stalled}:{recoveryActionId}` is checked through the indexed `(company_id, payload->>'issueId')` path. A later stall has a new action id, so it wakes again. - Each wake writes activity `issue.blocker_stalled_wake`. - The pass runs from the recovery-action sweep (`reconcileActiveRecoveryActions`) and from the per-issue blocked sweep (`reconcileResolvedDependencyWakeBackstop`, which visits each blocked issue). No new worker. - A waiter's agent that cannot read the stalled issue (`issue:read`, which honors private visibility) is woken without its title, identifier or recovery details; the activity entry withholds them too. - Database: migration `0450` adds the partial unique index `agent_wakeup_requests_issue_blocker_stalled_uq` on `(company_id, idempotency_key)` for `issue_blocker_stalled:` keys in delivered or pending statuses, so two concurrent sweeps cannot both deliver a stall. It is built `CONCURRENTLY IF NOT EXISTS` outside a transaction (listed in `MIGRATIONS_WITH_TOP_LEVEL_STATEMENTS`). - Queue: `allowsDependencyBlockedWake` (in `run-dispatch/domain/wake-context.ts`) lets a stall wake run while the waiter's blockers are unresolved, at both dependency gates. Without it the wake was parked until the stalled blocker resolved, which is never. Pause holds are unchanged. - Agent guidance: the wake payload carries `blockerStall`, and `renderPaperclipWakePrompt` adds a "Stalled dependency" section. It names the task and its recovery action and the board's next action, then the three choices: re-delegate, escalate with a comment, or block with a reason naming the stalled task. - Other reason lists: `issue_blocker_stalled` joins the responsible-user wake reasons, the conversation execution-wake reasons (it never drives a chat turn) and the wake diagnostic's known reasons. - Board surface: - `GET /issues/:id` returns `stalledDependencies`, readable issues only (`readableIssueEdgeIds`). - `StalledDependencyNotice` shows on the issue's chat notices, next to `IssueBlockedNotice`: each stalled child or blocker, its board next action, a link, and the child's own Retry (`useTaskRetry`), offered only when the child's interruption allows it. ## Verification Red/green: - `server/src/__tests__/issue-blocker-stall-wakeups.test.ts` (14 tests). - On master: no `issue_blocker_stalled` wake is raised. - With this PR: the parent is woken once per stall, and re-woken after a new stall. A blocker's dependent is woken. - The t05 shape (an action resolved as `blocked`) wakes once, and nothing more after a Retry. - No wake for an agent-owned action, a done, unassigned or hidden waiter, or an action resolved another way. - `listStalledDependencies` lists children and blockers. - `heartbeat-dependency-scheduling.test.ts` "admits an issue_blocker_stalled wake while a blocker is unresolved". On master the wake was parked (`null`); once admitted, the run-start gate cancelled it. With this PR it runs with `dependencyBlockedInteraction`. The file: 14 passed. - `packages/adapter-utils` `server-utils.test.ts`: the new prompt test failed on master (no `blockerStall`). The file: 141 passed. - `ui/src/components/StalledDependencyNotice.test.tsx`: 3 passed. `IssueChatThread.test.tsx`: 109 passed. Regression and static checks: - Nearby server suites (recovery durable wait, dependency wake routes, recovery actions, run-preparation): 149 passed. - `tsc --noEmit` passes for `packages/shared`, `server` and `ui/src`. - `pnpm check:token-gates` is clean. Review round 1 (Greptile, Superagent), each with a regression: - A backlog waiter is never woken. The waiter's status and assignee are guarded at enqueue. - One stall per run: no coalescing, so a merged run cannot keep only the last stall's context. - Only a delivered or pending wake ends a stall. A refused one (wake-on-demand off) is retried after 10 minutes, and an agent that takes no wakes is skipped without writing a row. - Company-wide passes resume after the last stall a capped pass reached. The per-issue sweep also checks the issue's own children and blockers, which covers an unassigned stalled blocker. - The dependency gates no longer trust the reason string. `verifyBlockerStallWake` requires a system request, the stalled issue's current stall action, and a real child or blocker edge. An agent-requested wake with the same context is parked (tested). - The notice shows a refused Retry's reason, and a lost response as "Taking longer than usual…", with Retry still available (tested). Review round 2 (Greptile), each with a regression: - Race: two passes claiming one stall leave one delivered row (unique index; the loser's insert is skipped). - The company recovery sweep selects companies whose only stall is a resolved-`blocked` board action, so an unassigned stalled blocker with a todo waiter is reached. - Private stalled issue: the waiter's wake and activity carry no title, identifier or recovery details. - `GET /issues/:id` always returns `stalledDependencies`, so a cleared stall replaces the cached list. - The notice shows a failed child read with a Reload button (tested). - `pnpm --filter @paperclipai/db check:migrations` passes. Review round 3 (Greptile), each with a regression: - A stall wake that fails to enqueue is retried: the recovery-action pass reports `blockerStallWakeFailures` and the dependency pass counts it in `enqueueFailed`, so the worker throws and retries at its backoff (`issue-recovery-work-lifecycle.test.ts`). - The notice drops a stall once the child's refreshed status has moved on (`StalledDependencyNotice.test.tsx`, 7 tests). ## Risks - A deploy wakes the waiters of every issue that is stalled today, once each. That is intended (they are stranded now), and it's bounded at 200 stalls per pass. - A stall wake may run while blockers are unresolved, like a comment wake. It is bounded to one per stall, and pause holds still apply. - The agent skill (`skills/paperclip`, CODEOWNER-owned) does not yet list the new reason. The wake prompt carries the guidance. - One additive index, built concurrently; no persisted run state change. Existing rows cannot violate it before deploy, since no `issue_blocker_stalled:` keys exist yet. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-08 18:26:07 -06:00
DottaandClaude Opus 5.5	e8a3f1f6f2	feat(recovery): prove a replaced container's records gone through a fenced controller epoch (#20054 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - After a restart, the control plane settles in-progress records (leases, claims, intents) only once it proves their owner process is gone > - The proof compares host and PID space, so a stamp from a replaced container or a rebooted machine stays unprovable forever, and its records never settle > - Self-hosted users on Docker, Kubernetes and Fly hit this on every redeploy; a Railway deployment with an exclusive volume is covered by `deployment_replaced` (#20026) > - This pull request adds a fenced controller epoch: each boot holds a database lease, and an expired boot is fenced so its records can be proven gone > - The benefit is that work stranded by a replaced container is recovered, without keeping an idle database awake ## Linked Issues or Issue Description Follow-up to #20026 and the Phase 2 durable-ownership data. Related: #19965 (owner stamps), #19883 (process space). No duplicate PR was found. What happened? A record stamped by a server process in another container reports `different_process_space`. A dead PID elsewhere is never proof, so the record stays `unprovable` and is never settled. Every redeploy of a self-hosted container leaves such records behind. Expected behavior A record owned by a server boot that was replaced (stopped cleanly, or lost its lease and was fenced) is proven gone and settled exactly once. A live boot's records stay with it. An idle server issues no recurring queries. Steps to reproduce 1. Run Paperclip in a container and start work, so an environment lease is stamped by that boot. 2. Replace the container. The new container has a new PID namespace. 3. The ownership reconciler reports `different_process_space` (unprovable) for the old lease, forever. Paperclip version or commit `master` before this PR. ## What Changed - New `controller_instances` table (migration 0449): boot id, epoch (bigserial), process space, pid, a lease on the database clock, `fenced_at` / `fenced_by_epoch`, `stopped_at`. - `controller-instance-lease.ts`, registered with the shared delivery-work coordinator (`controller-instance-lease` queue, runs during drain): - Holds work → renews; idle → silent. One upsert creates the row on first use and extends the lease only if the boot holds work: a stamp within the last 90 s, or a stamp whose ownership write may still be pending (held until the server's tracked work settles, capped at 10 minutes; a renewal that sees some other held record does not clear it, so a slow ownership write cannot be outlived), or an in-progress record held by its boot id. Those records are active environment leases, in-flight cleanup claims, sandbox creation intents, workspace finalize attempts, agent lifecycle steps, native finalizer and cleanup leases (`lease_holder` bound to the token), open native coordinator claims, and running legacy runs. Renewal runs every 30 s while the boot holds work. When it finds none, the lease lapses and the worker sleeps until the next stamp (`onControllerStamp`). - No idle trailing statements. When the server's last tracked work settles, the worker re-checks holdings at once, at most every 5 s (the rate limit also absorbs the worker's own run). So the last check happens with the work, not 30 s later. - Quiesce, don't crash. Each renewal has a 10 s bound. A failed or timed-out renewal applies an internal task drain, so no new work is dispatched. A recovered renewal resumes. The boot exits only after 60 s of failure (counted from the first failed attempt's start) while it still holds work, or at once when it finds itself fenced. - Fence on demand, by a newer epoch. For a stamp from another host or PID space, the prover reads that boot's row: - `stopped` or `fenced`: gone. - live lease: alive. - otherwise, the boot's last sign of life is the later of its lease expiry and the record's last write plus the TTL. Within 30 s of that, the owner stays `alive` (`controller_lease_grace`), so the settle watch keeps rechecking. After that, the prover fences the boot, but only with a lease row of its own (created on demand) and only an older epoch. - A graceful shutdown records `stopped_at`. - A reconciliation pass that settles nothing (`record: false` or `settle: false`) never fences and never creates the boot's row. - `owner-proof.ts`: these proofs apply only to server-held records. A stamp with a recorded process group stays unprovable, because agent processes can outlive their server. The reconciler passes each record's `updatedAt` to the proof. - `task-admission.ts`: - the quiesce drain never replaces an operator's drain, and has no idle owner, so HTTP stays open; - a `subscribeIdleWorkSettled` hook fires when the last tracked work finishes. - Off on a Railway deployment with an exclusive volume (it has its own replacement proof). `PAPERCLIP_CONTROLLER_INSTANCE_LEASE=on\|off` overrides this. A stateless Railway service keeps the lease. A server without its own lease row never fences. - `maintenance-server-routes.test.ts`: in the post-run quiet window, the lease may check once more that the run's records were released. The test now excludes those statements, then asserts that the lease issues nothing in a further window. - Docs: `doc/execution-semantics.md`; the Phase 2 data doc records the two known gaps. ## Verification - `controller-instance-lease.test.ts` (15 cases): - a replaced container with all Railway variables empty is fenced and settled exactly once over two passes; - a live lease is alive; - an owner in grace, and work written after an idle lapse, stay alive and watched; - an older epoch never fences a newer one; - no fencing without its own lease row (off or unregistered), and an idle prover creates its row on demand; - a stopped boot is gone; - process-group stamps stay unprovable; - idle issues zero statements, and one upsert renews only while records are held; - a 45 s outage: quiesced, no exit, resumes; - a renewal that never answers: bounded, and the boot exits on time; - a 70 s outage: exits at 60–65 s, and the successor recovers the work exactly once; - fenced: stops; - the settle re-check; - graceful stop; off on a volume-exclusive Railway deployment, on for a stateless one, and the on/off override; - a running legacy run keeps the lease live. - Red, with the proof's instance check removed: the replaced-container, live, stopped and successor cases fail. - Wider: task-drain, idle-sleep, idle-local-work, owner-proof and ownership suites, plus the maintenance quiet-window tests. Server low-memory typecheck is clean. ## Risks - Clock skew. The proof compares a record's `updatedAt` (often the writer's clock) with the lease (database clock). The 30 s grace absorbs ordinary skew. - A new exit path exists. A server whose database is unreachable for more than 60 s while it holds work now exits, after first quiescing. This is the intended safety backstop. - Bounded trailing activity. A lease that holds work issues one statement every 30 s, plus at most one check when its work settles. An idle server issues none. - Boots from before this release have no row, and their records stay unprovable. The board "mark owner gone" action for those follows in a separate PR. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-08 11:06:32 -06:00
DottaandClaude Opus 5.5	96badeaa42	fix(lifecycle): never repeat a passed harness verification; settle a dead verifier's lease at once (#20030 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A new or reconfigured agent runs a harness verification (a hello probe in a test sandbox) before it is ready, and its runs wait until it passes > - In the final Daytona restart chaos wave, a Codex agent's runs waited about 417 s for their first sandbox, while boot took only about 32 s > - Each control-plane restart killed the verifier. The next process waited out the 120 s lifecycle lease and then booted a fresh sandbox. Nothing recorded a configuration that had already passed. > - This pull request records a passed verification by what makes it valid and reuses it, and settles a dead verifier's lease on the shared ownership path at once > - The benefit is that a restart never repeats a passed verification, and never leaves runs waiting out a dead process's lease ## Linked Issues or Issue Description What happened? In the final Daytona chaos wave, the Codex agent was created at 09:55:46 UTC and its three runs were queued. Verification ran four times, in four sandboxes, because faults K1, K4 and K2 each killed the verifying server. After K2 the server was ready at 10:00:20, but verification restarted only at 10:02:13: it waited out the 120 s lifecycle lease. The first run sandboxes were created at 10:02:43, 417 s after launch. Steps to reproduce 1. Create a Codex agent and assign it a task at once, so the task waits for harness verification. 2. Kill the control plane (SIGKILL) while the agent is verifying. 3. The restarted server waits out the dead verifier's 120 s lifecycle lease, then verifies again in a new test target. The task's first token arrives about 130 s after the fault. Expected behavior - A passed verification of the same effective configuration in the same runner image is never repeated. - A verification is never restarted from scratch while its holder process is alive. When the holder is proven gone, its lease is settled at once. - Runs gate only on a configuration that has never passed. Root cause `verify()` (`server/src/services/agent-harness-verification.ts`) leased a fresh sandbox on every attempt and recorded nothing on a pass. The lifecycle lease (`modules/agent-lifecycle/adapters/postgres.ts`) named no holder process, so a restart could only wait for it to expire. ## What Changed - Restart chaos TTFT driver: a `verify` phase, reported in its own rows, and a `--verify-fault K1\|K2\|K6` option. The fault fires 1 s after `verifying` is observed, so it interrupts a held lease. The seed keeps each agent's creation body, so the driver can hire an identical agent. - Persisted pass: new columns `agents.harness_verified_digest` and `harness_verified_at` (migration 0448). The digest is an HMAC, keyed with the instance's decision-signing secret, over: - the fully resolved effective configuration: every value the test used, including `cwd`, resolved credentials, and agent-over-environment precedence; - the selected AI account and its credential generation (connection and grant ids and `updatedAt`, never the credential); - the environment and the runner image. The key means the stored value cannot confirm a guessed credential offline. For a sandbox, the runner image is an immutable image digest or a qualified Daytona snapshot ID (`sandboxBinding`, now exported). For local runs it is the server version. A mutable image or snapshot name, or a local environment redirected to the managed sandbox, never reuses a pass. - Server-only: `normalizeAgentBaseRow` and `redactAgentRowForResponse` strip the digest and its timestamp from agent API responses. - `verify()` still runs every account, policy and secret check, then returns complete on a matching digest without booting a test target. It records the digest on a pass before the lifecycle step completes, so a restart in between reuses it. - Lease holder: the lifecycle `claim()` stamps the claiming controller process on the lease (`lifecycleOperation.leaseHolder`, supplied through the lifecycle effects port) and clears the stamp with the lease. The compare-and-swap release lives in the lifecycle module (`releaseAgentLifecycleLeaseOfHolderInTransaction`). - Shared ownership path: a new `agent_lifecycle_lease` kind with `settleAgentLifecycleLease`. - When the reconciler proves the holder gone, settle clears exactly that lease (compare-and-swap on the holder), notifies lifecycle work, and logs `agent.lifecycle_lease_reconciled`. - A live holder is never taken over. The lifecycle state, operation and progress are untouched. ## Verification - `restart-verification.test.ts` (embedded Postgres, real lifecycle store and worker, real reconciler pass): - A verification held by a dead process is claimed and completed at once after the startup pass, with the agent ready in under 10 s instead of waiting out the 120 s lease. It fails without the new kind. - A live holder is never taken over. - The claim stamps the holder, and `defer` clears it. - `agent-harness-verification-preflight.test.ts`: - A second `verify()` of the same configuration allocates no target. A revoked account still fails before reuse. A changed model, `cwd` or literal credential tests again. It fails without the reuse. - A failed verification records nothing. - Ownership report, all lifecycle module tests, remote, provider-API and unit harness verification tests, and crash-point call sites: 13 files, 220 tests pass. - Targeted local run: the TTFT driver's new `verify` phase (`--phases verify --verify-fault K1`, Codex, 2 samples) hires a new agent, assigns it a task at once, kills the control plane (K1) while it verifies, and times fault to first agent token: - Before (master server code): 129.8 s and 129.8 s. The restarted server waited out the dead verifier's 120 s lease. Run-log TTFT from run creation was only 4.1 s. - After (this branch): 15.8 s and 17.2 s. The startup reconciler pass settled `agent_lifecycle_lease` and verification re-ran at once. ## Risks - A stale pass: the digest covers every resolved value, the selected account generation, the environment and an immutable runner image, so any change tests again. Rotating the instance signing secret invalidates every digest, so each agent verifies once more. - Migration: two nullable columns, no backfill. Existing agents verify once more, then reuse. - Settle: it runs only on a `gone` proof, compare-and-swap on the exact holder. It never changes the lifecycle state. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file editing, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-08 08:10:40 -06:00
DottaandClaude Opus 5.5	576ba29fff	feat(recovery): settle the legacy controller lease on the shared ownership path (#19953 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Legacy (non-native) runs hold a controller lease on `heartbeat_runs` while the server prepares and dispatches the adapter. The shared ownership reconciler now settles proven-gone owners (Phase 2 of the durable ownership plan) > - The lease stamped only a boot id. The reconciler could never prove its owner gone (`missing_identity` in the Phase 2 data), and recovery released it by age: lease expiry (60 s), then a 5-minute age guard on dispatched runs > - A hard-killed server's legacy run therefore stayed `running` for up to 6 minutes after the next boot > - This pull request records the controller process with the claim, registers a compare-and-swap settle, and makes live-run recovery use the shared prover instead of the age guard when the controller is proven gone > - The benefit is that a dead controller's run is settled at once, while a live, unprovable, or previous-release controller keeps today's behavior ## Linked Issues or Issue Description Refs #19933 (the settle hook, merged). Stacked on #19950 (migration 0446, registry) and targets its branch until it merges; then it retargets to master. What happened? After a hard kill, a dispatched legacy run stayed `running` until its controller lease expired and its last update was 5 minutes old. What did you expect? The next boot proves the old controller gone and fails the run as a lost process at once. Steps to reproduce 1. Start a legacy (non-native) run and let it dispatch the adapter. 2. Kill the server (SIGKILL). 3. Start the server. The run stays `running` for up to 6 minutes. ## What Changed - `heartbeat_runs.controller_process` (jsonb, migration 0447): `{bootId, pid, hostHash, processStartedAt}` of the claiming server process. It names the controller only while its `bootId` equals `controller_boot_id`. Revocation swaps the boot id, so a revoked lease never keeps it. - `legacyControllerClaim` writes it in the same UPDATE (from `currentControllerProcessStamp()`, no I/O). - `legacy-controller-lease.ts`: `legacyControllerOwnerStamp`, `legacyControllerProvenGone` (calls `proveOwnerGone`), and `settleLegacyControllerLease` (compare-and-swap expiry of the proven controller's outstanding lease after it wakes live-run recovery). - `ownership-registry.ts`: `legacy_controller_lease` registers `settle` and `listForRuns`. The owner is the bound process; other rows are boot-id fences. The listing covers outstanding leases only. - `heartbeat/recovery.ts` (3 small hunks): a controller of another boot that the shared prover proves gone has its live lease settled through `settleOwnableKind` and skips the age guard. The local child-process check after it is unchanged, so a live child still keeps the run running. - Migration 0447 builds the partial index with `CREATE INDEX CONCURRENTLY` (heartbeat_runs is a known-large table) and is added to `MIGRATIONS_WITH_TOP_LEVEL_STATEMENTS`. Bespoke code deleted: none. The kind had no liveness proof; the age guard stays for controllers that are not proven gone. ## Verification - `cd server && npx vitest run src/services/legacy-controller-lease.test.ts`: 33 passed. - `cd server && npx vitest run src/__tests__/ownership-reconciliation-report.test.ts`: 17 passed. - Red with `recovery.ts` and `ownership-registry.ts` from the base commit (tests, schema and lease module from this branch): 4 failed, 29 passed. Red: the crash-point reaper test, the expired-lease age-guard test, the reconciler settle test, the exact-controller CAS test. The tests were written after the code. - New tests: - the claim stamps this process, and a changed boot id unbinds it; - crash point: a controller dispatched the adapter and was killed with its lease live; the startup reaper (default 5-minute age guard) fails the run as `process_lost` at once; - a dead controller's expired lease skips the age guard; - counter-cases keep the run and lease through the reaper and a reconciler pass: a live earlier-boot PID, a dead PID in another PID space, and a previous-release row with no `controller_process`; an expired lease of a live controller stays behind the age guard; - a read-only pass (`record: false`) never settles; a recording pass expires the lease and leaves the run to live-run recovery; - settle refuses a controller that changed after the proof. - Not run locally: typecheck (CI runs it) and the wide suites. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): rows saved by the previous release have no `controller_process`. They stay boot-id fences with today's release (expiry, revocation, age guard). A rollback ignores the column. - Unprovable controllers (another host or PID space, unknown space, a live PID with an unreadable start time) never release early. Their handoff stays the lease expiry plus revocation, and the age guard. A different host is never proof. - Behavior change: a dispatched run whose controller is proven gone is failed as `process_lost` without the 5-minute wait. The retry decision is unchanged. - The settle expires the lease only. Live-run recovery still settles the run under its own checks. Accounting and workspace obligations are not touched. - The index build is concurrent. A cancelled build is retried by the migrator's invalid-index handling. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, local test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 23:27:54 -06:00
DottaandClaude Opus 5.5	bf3a067076	feat(recovery): settle the finalizer and cleanup leases on the shared ownership path (#19950 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Native runs keep their ownership in `native_run_finalizations`, and the shared ownership reconciler now settles proven-gone owners (Phase 2 of the durable ownership plan) > - The finalizer lease (`native-finalizer:`, 5 min) and the retained-session cleanup lease (`native-cleanup:`, 60 s) recorded only a random token. They named no holder process > - A server killed while it finalized or cleaned up kept the run waiting for the whole lease. The lease was released by age alone. A graceful shutdown also keeps an in-progress finalizer lease for the next boot to wait out > - This pull request records the holder process with each claim and moves both kinds onto the shared prover and a compare-and-swap settle > - The benefit is that a dead holder's run continues in the first pass after boot, and a live or unprovable holder is never released ## Linked Issues or Issue Description Refs #19933 (the settle hook and the first moved kind, merged). What happened? A finalizer or cleanup lease whose server process died stayed held until the lease expired (5 min or 60 s). The run stayed `running` and its follow-up work waited. What did you expect? The next boot proves the dead holder gone and frees the lease at once. A live holder, or one that cannot be proven gone, keeps its lease. Steps to reproduce 1. Accept a native result and let the finalizer claim it. 2. Kill the server (SIGKILL) before the finalizer commits. 3. Start the server. The run stays `running` for up to 5 minutes. ## What Changed - `native_run_finalizations.lease_holder` (jsonb, migration 0446): `{token, bootId, pid, hostHash, processStartedAt}` of the process that took a token-only lease. It names the holder only while `token` equals `lease_owner`, so renewals keep it and a later lease never inherits it. The executor's `controller_*` columns are not changed. - The finalizer claim (`native-run-finalizer.ts`) and the cleanup claim (`native-session-executor.ts`) write it in the same UPDATE as the lease, from `currentControllerProcessStamp()` (no I/O). - New `native-token-lease-settlement.ts`: compare-and-swap settle that expires exactly the proven-gone holder's outstanding lease, after it notifies the finalization or cleanup work that the expiry frees. - Both claims also wake the ownership worker queue in their transaction, so a quiet worker watches the new holder (Greptile round 1). - `ownership-registry.ts`: `native_finalizer_lease` and `native_cleanup_lease` register `settle`. Their owner is the holder process; rows without a holder keep the token fence. Listings cover outstanding leases only. - `heartbeat/recovery.ts`: restart recovery settles both kinds before it finalizes and schedules cleanup. A failure is logged and the reconciler pass retries it. - Two sparse partial indexes on `lease_expires_at` for the two listings, so the settle watch re-check stays indexed. Bespoke code deleted: none. These kinds had no liveness check; their only release was lease age (the takeover in the claim), which stays as the fence for unprovable holders. ## Verification - `cd server && npx vitest run src/__tests__/heartbeat-native-restart-suspension.test.ts -t "finalizer\|cleanup\|holder\|exact lease"`: 12 passed (rerun after the rebase on master). The crash-point test also asserts the ownership wake for its run; it fails without the signal. - `cd server && npx vitest run src/__tests__/ownership-reconciliation-report.test.ts`: 17 passed. - Red on the base branch (server code at `bea3bfb20b`, tests and schema from this branch): 7 new tests fail, 5 pass (the 5 are existing tests). Red: the crash-point restart test, the two reconciler settle tests, the three live/unprovable counter-cases (owner was a token fence), and the exact-lease CAS test. The tests were written after the code. - New tests: - crash point: a finalizer claim was written and its holder killed before commit; the next restart finalizes the run, and this boot's claim stamps itself as holder; - a dead finalizer or cleanup holder is settled by a recording pass, never by a read-only pass (`record: false`); the accepted result and phase are untouched; - live counter-cases: a live earlier-boot PID (`pid_alive`), the current boot (`current_process`), a dead PID in another PID space (`different_process_space`, unprovable) keep the lease through a pass and a restart; - a holder written for another token, and a holderless row of the previous release, stay token fences, also with `PAPERCLIP_EPHEMERAL_SERVER=true`; - settle refuses a lease taken over after the proof (`owner_changed_since_proof`). - Not run locally: typecheck (CI runs it) and the wide suites. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): rows saved by the previous release have no `lease_holder`. They stay token fences and the existing claim takes them over at expiry. Neither lease outlives 5 min, so this covers at most 5 min after the upgrade. A rollback ignores the new column. - Unprovable holders (other host or PID space, unknown space): no operator action. The lease is short and self-expiring; at expiry the next claim takes it over and the old holder's next token compare-and-swap fails. That fence is the handoff. A different host is never proof. - The settle only expires a lease. Finalization and cleanup still run under their own checks (cleanup keeps its maintenance-history proofs). Settling ownership does not settle the accepted result, workspace preservation, or accounting. - Migration adds a nullable column and two partial indexes on a sparse predicate. Low risk. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, local test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 22:16:34 -06:00
DottaandClaude Opus 5.5	f5400e2594	feat(recovery): settle the accepted-result lease on the shared ownership path (#19933 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A control-plane restart can kill the controller after an agent's result is accepted. The result then stays leased to a dead process. > - Today a private sweep (`native-dead-controller-result-lease.ts`, #19713) proves that controller dead with its own liveness rules. > - The durable-ownership plan (#19831) replaces private proofs with one prover (`proveOwnerGone`, #19853) and one registry (#19861). > - This pull request moves the accepted-result executor lease to that shared path and deletes the private sweep. It is Phase 2's first kind. > - The benefit is one tested rule for when a dead owner's result lease is released, and the reconciler now repairs a lease that restart recovery missed. ## Linked Issues or Issue Description Refs #19831 (plan), #19853 (prover), #19861 (registry), #19713 (old sweep), #19883 (legacy host fallback), #19927 (Phase 2 data). What happened? The accepted-result lease had its own liveness proof, separate from the shared prover. The reconciler could only report a dead owner, not settle it. When restart recovery missed a lease, it waited out the 20-minute lease. What did you expect? One prover decides, and both restart recovery and the periodic reconciler pass settle a lease whose controller is proven gone. Steps to reproduce 1. Accept a native run result. 2. Kill the controller (SIGKILL) and start a new server. 3. If the restart sweep does not see the row, the result stays leased until the lease expires. ## What Changed - `ownership-registry.ts`: a kind may register `settle` and `onUnprovable`. `native_accepted_result_lease` registers both. Other kinds stay report-only. - New `native-accepted-result-lease-settlement.ts`: a compare-and-swap settle that expires exactly the proven owner's lease. It keeps the old guards: the run must still be `running`, remote copyback stays fenced, and a lease taken over since the proof is left alone. - `ownership-invariant-report.ts`: the pass calls `settle` on `gone` and `onUnprovable` on `unprovable`. A read-only pass (`record: false`) never settles. New `settleOwnableKind()` for restart recovery. - `heartbeat/recovery.ts`: restart recovery calls `settleOwnableKind("native_accepted_result_lease")` instead of the old sweep. - Deleted `native-dead-controller-result-lease.ts`. - `owner-proof.ts`: accepts a board attestation (`operator_attested`). It also keeps the one-release local fallback for rows saved before their PID space was recorded, on single-host servers only, and flags each use so it is logged (`legacy_host_unknown_dead_pid_proof`, #19883). An ephemeral server returns `unprovable` (`process_space_unrecorded`) and the existing "confirm the previous server stopped" board action is raised. ## Verification - `cd server && npx vitest run src/__tests__/heartbeat-native-restart-suspension.test.ts`: 27 pass, 7 of them new. - `npx vitest run src/services/owner-proof.test.ts src/__tests__/ownership-reconciliation-report.test.ts`: pass. - Red/green (tests written after the code): 5 new behaviour tests fail on master and pass here. They cover the ephemeral board action, the reconciler-pass settle, the live-owner counter-case in that pass, the legacy marker, and operator attestation. The stamped-dead-controller and foreign-PID-space cases pass on both, as the old path behaved the same. - Server typecheck passes (`npx tsc --noEmit -p server/tsconfig.json`). - Not run locally: the full server suite (`pnpm verify` asks for broad coverage because a file was deleted). Required CI covers it. ## Risks - Previous-release story (rules/upgrade-safe-run-state.mdc): NRF rows saved before #19868 have no `controller_host_hash`. They keep the same one-release local proof as before on single-host servers, and each use is logged. On ephemeral servers they stay unprovable and ask the board, as before. Rows on another PID space keep their lease (the fence), as before. - Fail-open risk: settle is compare-and-swap on the lease token, boot, PID, host hash and start time of the proven owner. An `unprovable` owner is never released. Live-owner and foreign-space cases are tested. - No change adds work before `turn.start`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, in Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 20:58:04 -06:00
Nicky Leach	0363ebec70	fix(connectors): stop GitHub access refreshes from advancing agent runtimes (#19902 )	2026-11-07 14:43:39 -08:00
DottaandClaude Opus 5.5	fc6e1b0346	perf(native): keep local Codex and OpenCode runners warm by default (#19888 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - When someone messages an agent, the turn must start fast. Time to first token (TTFT) is a first-class metric. > - The Phase 0 baseline (#19846) found that every local turn launches a new runner and loads the provider session again, because `per_turn` is the default lifecycle. That made a follow-up message slower than a new task. > - Warm runners keep the runner and provider session alive between runs. #19874 fixed the defect that broke warm OpenCode follow-ups, and #19879 bounds an idle warm runner whose controller dies. > - This pull request makes warm the default for local Codex and OpenCode agents, and migrates existing agents that only carried the old creation default. > - The benefit: follow-up TTFT p50 drops from 12.0 s to 4.7 s (Codex) and from 21.7 s to 4.2 s (OpenCode), with no new restart-chaos failures. ## Linked Issues or Issue Description Refs #19846 (TTFT baseline), #19852 (startup sub-spans), #19874 (warm completion contract), #19879 (warm reconnect grace). What existing behavior does this improve? The default runner lifecycle for native agents, and how a follow-up message starts. Current behavior Agent creation writes `lifecycleMode: "per_turn"` into every native agent. Every follow-up launches a new runner and restores the provider session: 4.2 s (Codex) and 16.3 s (OpenCode) at p50 before the turn starts. Proposed behavior New native agents store no lifecycle. On a local target, an unset lifecycle resolves to `warm` with the default 5-minute idle window for Codex and OpenCode. Other harnesses, remote targets and managed providers without warm support stay `per_turn`. An explicit choice always wins. Migration 0443 clears the stored creation default from existing agents, except where an edit set "Turn by turn" explicitly. Reason and benefit Measured locally (`doc/plans/2026-11-07-warm-follow-up-ttft.md`). Warm follow-ups are 2.6–5× faster for Codex and OpenCode, and restart recovery latency is equal or lower. ## What Changed - `native-lifecycle.ts`: an unset `agentMode` resolves to warm (5-minute idle window) for local `codex_app_server` and `opencode_server` agents. `runtime-selection.ts` passes `localTarget`. Explicit `per_turn` or `warm` wins. An admitted session keeps its persisted policy. ACPX Claude stays `per_turn`: it relaunches its provider process on every follow-up by design, so warm did not shorten its follow-up (10.7 s warm vs 10.5 s per_turn). - Creation and configuration writes no longer store `lifecycleMode: "per_turn"` for Codex, Claude or OpenCode. This covers `normalizePaperclipRunnerAdapterConfig` (runs on every create and update), `paperclipRunnerTransitionConfig` (switching to the native runner), `agent-runner-selection.ts`, `codex-local` `build-config.ts`, and the simplified new-agent setup (`paperclipRunnerCreationLifecycle` in `@paperclipai/shared`). Grok, Pi and Cursor keep their explicit value. - Agent form: the Runner lifecycle field shows the unset state as "Automatic". "Turn by turn" and "Warm session" remain. - Migration `0443_native_warm_follow_up_default.sql`: clears `lifecycleMode = 'per_turn'` from native Codex, OpenCode and Claude agents unless `agent_config_revisions` shows an edit that set it to `per_turn`. Each migrated agent gets an `agent.updated` activity entry with the old value (`actor_id = migration:native-warm-follow-up-default`). Creation records no revision, so a "Turn by turn" pick made at creation cannot be told apart from the old default. The product owner approved migrating those agents. Claude agents follow the default, which is `per_turn` today. - Restart chaos harness and TTFT driver: `--lifecycle per_turn\|warm\|default` (saved in the wave plan). `default` removes the catalog's pinned lifecycle, so a wave exercises the real default path. - Docs: `doc/DEVELOPING.md` "Runner lifecycle default", and the results in `doc/plans/2026-11-07-warm-follow-up-ttft.md`, which also documents baseline finding 4 (Claude's resumed turn-start gap is ACPX's per-turn process generation, not the provider). ## Verification - `server`: `native-lifecycle.test.ts` (new default cases: local Codex and OpenCode warm, Claude, remote, unknown target, unmeasured harness, managed Claude, admitted per-turn session, explicit choices, non-native adapter), `agent-runner-selection.test.ts`, `runtime-selection.test.ts` (335 pass). - `packages/db`: `native-warm-follow-up-default-migration.test.ts` on embedded Postgres. Default agents are cleared, the explicit edit is kept, other harnesses and legacy adapters are untouched, audit rows are written once, and a rerun is a no-op. Without the explicit-edit filter the test fails. `check:migrations` passes. - `codex-local` `build-config.test.ts` (65), `ui` `config-fields.test.tsx` (40), restart-chaos unit tests (134), `tsc --noEmit` for `server`. - `adapter-utils` `paperclip-runner-lifecycle-default.test.ts`: configuration writes and adapter conversion store no lifecycle for Codex, OpenCode and Claude, keep `per_turn` for the others, and preserve explicit choices. It fails without the fix. - End-to-end default check on this branch (`ttft-baseline.ts --lifecycle default`, codex and opencode, 2 samples): the agents read back with no stored lifecycle, and every follow-up reused the runner and provider session (no `runner.process.launch`). Follow-up TTFT was 3.6–4.8 s. This check found the per-write `per_turn` injection fixed here. - Restart chaos (codex and opencode, A1/B1/B5, K1/K2/K6, seed 4242), 8/8 PASS each with no open signatures: forced warm, forced per_turn, and `--lifecycle default` on this branch (agents created without a lifecycle). - `pnpm verify` selects broader CI (harness config is a global input), so required CI supplies the broad coverage. ## Risks - Behavior change: local Codex and OpenCode agents keep a runner and provider process for up to 5 minutes after a run. Instance sleep waits for that idle window. The process is reaped by the idle timer, by graceful shutdown, or by the #19879 reconnect grace if its controller dies. - Migration: agents whose "Turn by turn" was chosen at creation become Automatic. The activity entry records the old value; choosing "Turn by turn" restores it. - Previous-release story (`rules/upgrade-safe-run-state.mdc`): a task session keeps the lifecycle policy it was admitted with, so sessions saved before this change stay `per_turn`. New sessions get the default. No run, checkpoint or launch state changes shape. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 14:37:36 -06:00
DottaandClaude Opus 5.5	5a20fca9f7	fix(recovery): judge an orphaned run's pid only in the PID space that recorded it (#19871 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The orphan reaper (`terminalizeOrphanedRunningRun`) ends a `running` run whose recorded process is gone > - It judged "gone" with `kill(pid, 0)` on the local host, wherever the process actually ran: another host, another PID namespace, or a sandbox > - So a run whose process is alive elsewhere could be terminalized while it still works > - #19868 fixed the same gap for native coordinator takeover and the runtime-control sweep. This pull request finishes finding 2 for the reaper > - The benefit is that a dead local pid never proves an owner on another host is gone ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 2) names the orphan reaper `terminalizeOrphanedRunningRun` (`recovery/service.ts`) as a proof that accepts "the pid is dead here" for a process anywhere. `heartbeat_runs` recorded `process_pid` with no PID space, and a sandbox pid could collide with a local one. Steps to reproduce 1. A run records `process_pid` on host A, or in a sandbox. 2. On host B, that pid number is not alive. 3. B's stale-lock sweep terminalizes the run as `orphaned_running_run`. Expected behavior The process-death authority applies only in the PID space that recorded the pid. Issue-terminal authority is unchanged. Refs #19846, follows #19868 ## What Changed - Migration `0442`: add nullable `heartbeat_runs.process_host_hash`. - `heartbeat/run-lifecycle.ts` `persistHeartbeatRunProcessMetadata`, the one writer of `process_pid`, stores `currentProcessSpaceHash()` for a local pid and `"remote"` for a sandbox pid. - `recovery/service.ts`: the process-death authority runs only when `process_host_hash` is null (rows saved before this column, for one release) or `sameProcessSpace` matches. - Tests: the reaper leaves a dead pid alone for another host, a sandbox, and an unreadable space, and terminalizes it in this space. The writer stamps local and remote pids. ## Verification - `npx vitest run src/__tests__/recovery-stale-issue-lock-sweep.test.ts`: 46 passed. - Red before the fix: with the old `recovery/service.ts`, the three cross-space cases fail (the run is terminalized). Green after. - `pnpm db:generate` produced `0442_low_salo.sql` (one `ADD COLUMN`), and the snapshot set was pruned to five. `pnpm --filter @paperclipai/db check:migrations` passed. Server `tsc --noEmit` shows no errors in the changed files. ## Risks - Previous-release story: runs saved with `process_host_hash = null` keep the previous local proof for this release. That matches #19868, because stranding in-flight runs at upgrade would be a restart failure. New rows are strict. - A run whose process really lived on another host now stays `running` until issue-terminal authority, its controller lease, or another owner settles it. - No new I/O before `turn.start`. The hash is computed at module load, and the stamp rides the existing process-metadata update. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 12:22:15 -06:00
DottaandClaude Opus 5.5	68db7ed9e3	fix(recovery): never accept a dead local pid as proof for an owner on another host (#19868 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - After a restart, recovery decides that an in-progress record's owner is gone and takes it over > - Two of those proofs use `kill(pid, 0)` on the local host. A pid that is dead here says nothing about a process on another host or in another PID namespace > - So a controller or runtime-control owner that is still alive elsewhere can be taken over while it still runs > - This pull request records the owner's PID space (the existing `controller-process-identity` host hash) and judges a pid only in that same space > - The benefit is that a different host is never proof. Those records follow their existing lease or TTL instead ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 2) found three proofs that accept "the pid is dead here" as proof for an owner on another host: `evaluateNativeControllerTakeover` (`native_run_finalizations` has no host column), the runtime-control sweep (`workspace-operations.ts`), and the orphan reaper `terminalizeOrphanedRunningRun`. Only `controllerProcessExited` checked the host. Steps to reproduce 1. Run two control-plane processes on different hosts, or in different PID namespaces, against one database. 2. Let host A own a native finalization lease or a runtime-control operation. 3. On host B, run restart recovery. If A's pid number is not alive on B, B takes over the live owner. Expected behavior An owner whose PID space differs from this process's, or cannot be read, is unprovable. Its record waits for its lease, fence, or TTL. Refs #19846 ## What Changed - Migration `0441`: add nullable `native_run_finalizations.controller_host_hash`. - `controller-process-identity.ts`: export `currentProcessSpaceHash()` and `sameProcessSpace()`. An unreadable space is stored as `"unknown"`, which never matches. - `native-restart-recovery.ts`: `currentNativeControllerIdentity` carries `hostHash`, which both coordinator claim writes (`native-restart-recovery.ts`, `native-session-executor.ts`) store. `evaluateNativeControllerTakeover` returns `controller_host_unprovable` before any pid probe when the recorded space is not this one. `native-dead-controller-result-lease.ts` selects the column. - `workspace-operations.ts`: runtime-control owner stamps record `hostHash`. `ownerProcessProvenGone` requires the same PID space (EPERM = alive), otherwise the existing staleness TTL applies. - Not in this PR: the orphan reaper `terminalizeOrphanedRunningRun`. `heartbeat_runs` has no host for `process_pid`, and its writers are spread across legacy and native paths. It follows as a separate PR with its own column. ## Verification - `npx vitest run src/services/native-runtime/native-restart-recovery.test.ts src/__tests__/workspace-runtime-control-recovery.test.ts`: 55 passed. New cases cover another host and an unreadable space (dead and recycled pid) for takeover, plus another host, unreadable space, and legacy stamp for the sweep. The sweep cases also confirm that the TTL still reclaims after the heartbeat lapses. - Red before the fix: the 5 new cases fail on the old code. Green after. - `native-controller-recovery.integration.test.ts`, `native-failed-run-owner-release.test.ts`, `native-startup-cleanup-recovery.test.ts`: 71 passed. - `pnpm db:generate` produced `0441_lucky_chameleon.sql` (one `ADD COLUMN`) and pruned to five snapshots. `pnpm --filter @paperclipai/db check:migrations` passed. Server `tsc --noEmit` shows no errors in the changed files. ## Risks - Previous-release story: `native_run_finalizations` rows saved before this column have `controller_host_hash = null`. They keep the previous local dead-pid proof for this release. Making them unprovable would leave every native run in flight at the upgrade in `awaiting_evidence` with no TTL, because local takeovers have no lease fallback. Rows written by this release onward are strict. Runtime-control stamps without `hostHash` are strict now, because that path has a staleness TTL. - Owners built from other receipts (workspace finalization owner, workspace stop proof) pass no host and keep the previous behavior. Track 2's shared `OwnerStamp` should absorb them. - A new row on a host that really moved (redeploy onto a new machine) waits for its lease or an operator instead of being taken over by pid. That is the intended "different host is never proof" rule. - No new I/O before `turn.start`. The hash is computed once at module load. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 11:14:48 -06:00
DottaandClaude Opus 5.5	e7936fb1ad	fix(heartbeat): gate process-loss retries on the shared failure budget (#19856 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When a server restart loses a run's process, the orphan reaper decides whether to retry the run > - `doc/execution-semantics.md` says process loss uses the shared durable failure retry counter, and `enqueueProcessLossRetry` already schedules against that budget > - The reaper still guards on `processLossRetryCount < 1`, but nothing has written that column since the move to the shared budget, so the guard does nothing > - So an exhausted chain still says "retrying once" and skips the interaction continuation path, and a legacy row with a non-zero counter is refused a retry it is owed > - This pull request replaces the dead guard with `failedRunRetryBudgetSpent`, the budget that the retry actually spends > - The benefit is one restart budget, read and written in one place, with honest run messages ## Linked Issues or Issue Description Bug description The Phase 0 ownership inventory (finding 5) found that `processLossRetryCount` has no writer and that its only reader is the reaper guard at `heartbeat/recovery.ts:2675`. The guard always passes for new rows. For rows written by earlier releases, it refuses a retry even when the shared failure budget has room. Steps to reproduce 1. Seed a legacy run that a restart stopped before adapter dispatch. Spend its whole failure retry budget (`executionRetryAccounting.failureRetries = max`). 2. Run `reapOrphanedRuns()`. 3. The run fails with "Process lost -- server may have restarted; retrying once", but no retry is scheduled. Expected behavior An exhausted budget gives no promise of a retry. A legacy counter value does not block a retry that the shared budget allows. Refs #19846 ## What Changed - `heartbeat/recovery.ts`: `shouldRetry` now checks `!failedRunRetryBudgetSpent(run)` instead of `processLossRetryCount < 1`. When the budget is spent, the reaper falls through to `scheduleInteractionContinuationInfrastructureRetryIfEligible`, which is what the old guard intended. - `packages/db/src/schema/heartbeat_runs.ts`: a comment marks `process_loss_retry_count` as legacy. There is no schema or migration change. - Tests: the three cases that used `processLossRetryCount: 1` to mean "retry already spent" now spend the real failure budget. Two new cases cover a legacy counter (a retry is still scheduled) and a spent budget (no "retrying once", `retryEligible: false`, no retry run). ## Verification - `npx vitest run src/__tests__/heartbeat-process-recovery.test.ts -t "process-loss\|failure budget\|bypass unknown process outcomes\|immediate terminal-run cleanup\|paused-tree work\|restart stopped before adapter dispatch\|reached adapter dispatch"`: 7 passed. - Red before the fix: with the old `recovery.ts`, both new cases fail. Green after. - Server `tsc --noEmit` shows no errors in the changed files. - The full `heartbeat-process-recovery.test.ts` file (419 cases) stalled locally at 0% CPU after about 15 minutes. That run was on a worktree whose package builds were stale at first. I ran the focused subset instead, and required CI runs the full file. ## Risks - Low risk. The retry decision now follows the same budget that `enqueueProcessLossRetry` already enforced. A run with budget left behaves as before. - Previous-release story: rows saved with `process_loss_retry_count > 0` are no longer refused for that reason alone. The shared failure budget, which earlier releases also wrote, bounds them. The column stays, so earlier-release readers (`queue.ts` startup resume) keep working. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-07 10:37:39 -06:00
Dotta Paperclip Codex	af0fe8fe81	Keep personal MCP connections functional while idle tenants sleep (#19427 ) ## Thinking Path > - Paperclip manages work for AI agents. > - Personal MCP connections should remain enabled while an idle tenant sleeps. > - Unfinished OAuth, transfer and delivery work must retain its owner and deadline. > - Cloud can receive bounded metadata and incoming work while the tenant remains the company-scoped authorizer. > - Current identity, revision and delivery acknowledgments establish when ownership has transferred. > - This change preserves useful wake, retries and revocation while making settled ownership inspectable without writes. ## Linked Issues or Issue Description Refs: #19377 and #19750. Hosted companion: [paperclip-cloud#1217](https://github.com/paperclipai/paperclip-cloud/pull/1217). What happened? Enabled personal MCP grants and subscriptions could keep an otherwise idle tenant awake. Ignoring those records would lose discovery, authorization, delivery and revocation obligations. Expected behavior Unconsumed authorization codes, device requests, file handoffs and delivery work retain their original deadlines. Settled connections remain enabled and become quiet after the current external owner acknowledges responsibility. Incoming useful work resumes normal authorization and delivery; revocation still takes effect for the current company. Steps to reproduce Complete normal PKCE/device consent and company selection, synchronize client/device and revocation state, retain the connection while idle, then exercise useful tools/events and revocation. Sleep eligibility requires current incoming/deadline ownership throughout. ## What Changed - Add bounded signed client/device metadata and revocation synchronization with exact revision, identity and ACK checks, startup recovery and finite legacy-device cutover. - Preserve company selection, authorization and operation identity. Register grant work before its INSERT in the same transaction; retain rollback, expiry and retry behavior. - Require current managed identity/resource before hosted publication. Receipt-cleared re-enable must obtain a fresh source ACK before device creation. - Reuse read-only settings and inspection budgets; connect MCP owners to normal startup, drain and shutdown. - Bound metadata pages and the actual signed request body while preserving the default limits of other operations. - Generate migration 0440 after the merged Legacy migration. Preserve all 438 existing executable migrations and the journal prefix; retain the normal five newest snapshots. - Preserve the merged transaction-owner forwarding and regression coverage from #19750 through normal ancestry integration. ## Verification - Current own Shared/SDK, database, eval-kernel and Runner builds passed, together with all seven normal application TypeScript programs. Missing generated package exports/workspace links were restored through normal setup; the original setup failures were retained. No source, compiler option, test assertion or timeout was weakened. - Normal migration generation changed only the five intended MCP tables; its SQL is byte-identical to the reviewed MCP delta. Fresh reference databases and both retained master/Muse histories upgraded through 0440, preserving historical hashes, row fields, schema and idempotence. Direct assertions cover the Legacy null default and MCP null/zero defaults. Two selected history cases passed; the other 21 database cases were unselected. - All six current MCP lifecycle cases passed with zero skips: normal PKCE approval intent, ACK recovery after outage, mutation during publication, disable/re-enable with original expiry, company-deletion rollback/commit and key rotation. - All 81 checks in five current whole files passed with zero skips: OpenAPI 34, read-only settings 2, diagnostic catalog 25, PostgreSQL diagnostics 7 and dependency scheduling 13. PostgreSQL fixtures ran normal migrations before test imports. - Earlier canonical proof at App `cd1c8c6` / Cloud `9f67531` includes real 60-second rate and three 15-second quiet windows, useful work and three revokes. Later paired proof at App `43af514` / Cloud `914eb0f` plus its reviewed candidate includes normal DCR, PostgreSQL metadata, a 144,017-byte signed publication, actual ACK, cap/default-413 controls and a real 15-second quiet window. The relevant producer/signing/wire inputs remain byte-identical in this integration; shared changes are qualified above. These remain source-scoped observations, not a fresh full canonical run on the integrated tree. - All known test owners, process groups and OS sockets closed; an independent final PostgreSQL audit found no remaining test sessions. One dependency-test trace recorded 46 opens and 45 close events. Its cause is unknown; this is not claimed as proof of graceful closure. - Fresh exact-head remote checks passed: 59 successful and 4 skipped contexts, with a complete current 5/5 Greptile review and all seven review threads resolved. Targeted local checks do not constitute a new whole-repository test run. ## Risks App and Cloud must agree on identity, revision, namespace, deadlines and revocation. Partial rollout, unavailable authority or missing ACK must retain awake debt. Shared startup/shutdown and settings changed since the earlier canonical profile, so historical observations carry only within their stated source scope. No deployed Railway/Neon suspension, Cloud alarm, savings or complete hosted Dot/Muse acceptance is claimed. ## Model Used OpenAI `gpt-6.1-sol` produced code and verification, with a Codex coordinator reviewing and integrating the changes. The coordinator's exact runtime model ID and context-window sizes were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-07 02:12:48 -06:00
Dotta Paperclip Codex	96bc021edb	fix(server): certify settled legacy processes for future retries (#19377 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Bounded retries must preserve current authority, budgets and deadlines. > - The tenant can wait for supported future work after the source process and its cleanup stop. > - Retained process identity alone cannot prove that cleanup finished. > - This change records host-owned settlement and checks its exact identity before a retry can cover its wait. > - Uncertain process state, changed authority, live claims and cleanup debt keep the tenant awake. ## Linked Issues or Issue Description Refs #19001. Related dependencies: #19019 and #18988. Related #19340 covers explicit Native task Retry; this change covers future Legacy process retries. Current integrated source: `1645970a9322d1213ba25fc7b52366c285682977`, normally merged with actual master `131b566ca4fa866c4348739c75cfe48c805b3398`. The prerequisites above are merged. This PR targets `master`. What happened? A future issue, company or review retry can retain its failed source process identity. The deadline reader could not prove that host cleanup finished. Supported waits stayed blocked. Ordinary issue retries also needed an exact source-settlement check, and represented coalesced requests needed exact input coverage. Expected behavior A supported future retry covers only its existing wait, under current company and actor authority, after exact host settlement. Missing, malformed, stale, cancelled, Native or unfinished source state stays blocked. No retry gains new execution authority. Steps to reproduce Fail an ordinary process or fail environment preparation before adapter entry. Let normal cleanup schedule the existing retry. Inspect its settlement and deadline, stop and reconstruct the owner, and admit one useful successor at the saved deadline. Hold cleanup or change authority to verify that the reader refuses coverage. ## What Changed - Add nullable internal `legacyProcessSettlement` state through normally generated migration `0439_cultured_impossible_man`. No backfill or adapter result creates the record. - Write exact host settlement after stopped-process and cleanup checks. Compare the current run and reject live claims or cleanup debt. Optional persistence failure preserves normal cleanup and keeps sleep coverage blocked. - Add a separate preparation receipt for a claimed Legacy run that failed before any adapter or Native dispatch. Require the same boot, run times, preparing stage, released claim and completed cleanup. A null PID alone proves nothing. - Clear settlement on a new claim, process metadata or Native selection. Omit the internal record from public serialized data. - Check exact source lineage and current authority for ordinary issue, company and taskless retries. Cover completed coalesced requests only when the admitted retry represents their exact inputs. - Add the closed `current_review_retry` wait with current reviewer, stage and existing issue authority checks. Require a nonempty current stage ID. - Add actual producer, cold reconstruction, SQL negative, redaction and optional-persistence controls. - Repair CI fixture expectations for the additive column, startup mock, budget owner and popup return URL. Bind the controlled Native comment server explicitly to loopback. - Replace temporary Slack clock logging with an exact persisted-deadline assertion. Wait until that real deadline before the existing single default poll. Keep both forced polls, business assertions and timing limits. ## Verification - On final integrated source `1645970a`, normal Shared/SDK prerequisites, Runner TypeScript and the entire normal App layered typecheck pass. Tracked source and lockfile remain unchanged. - All 26 whole-file settlement, recovery-reader and bootstrap controls pass. Seven separate real PostgreSQL producer/negative cases pass at `cf16c6a`; each has one selected passing case and 18 filtered registrations. Filtered registrations are not acceptance. - Master then changed the preparation source-lock scope. Its three intersecting cases were rerun on final `1645970a`: an actual failed company process, an actual failed ordinary issue process, and held preparation cleanup. Each preserves its source identity and original deadline and admits one useful successor. Issue and preparation cases exercise normal automatic retry; the company case uses the normal explicit bounded-retry producer. - The unchanged 26 controls and four other PostgreSQL cases retain their `cf16c6a` proof after a scoped source comparison. Optional settlement/preparation persistence failures keep certification blocked while normal cleanup completes. An entered adapter without process identity stays uncertified. This is scoped carry, not a claim that every earlier case ran again on the final head. - All recorded test owners and controlled groups closed. Final read-only SQL audits returned no test sessions. One earlier postcase resource barrier observed a transient unattributed database backend; that database and original evidence remain preserved. Its later disappearance is recovery, not an explained cause. No assertion, deadline or test body was relaxed. - Migration0439 was generated normally after master history. All executable SQL and journal history are preserved; the five retained snapshots are0435–0439. Every Legacy-owned patch and unrelated actual-master blob/mode is preserved. - Published exact head `1645970a9322d1213ba25fc7b52366c285682977` passes all current required checks: 68 successful contexts and eight expected skips after exhaustive pagination and superseded-run accounting. The fresh complete Greptile review scores this exact head 5/5. All four inline review threads are resolved. The latest Ponytail turn stopped without a verdict; one normal retry was requested, with no active turn or new finding observed. No old-head score is used. The original old-base policy failure, its dependent aggregate failure, and the corrected description-gate failure remain recorded. No full local repository suite is claimed; remote typecheck, test and build gates pass. To repeat the real database coverage, set both `PAPERCLIP_RECOVERY_DEADLINES_TEST_DATABASE_URL` and `PAPERCLIP_RECOVERY_DEADLINES_TEST_ADMIN_DATABASE_URL` to the same fresh dedicated test database and run the selected `recovery-deadline-acceptance.test.ts` cases with one worker. An unset URL, skipped case or filtered registration is not acceptance. The fixtures use controlled local processes and real PostgreSQL. Reconstruction creates new service owners inside the same test process. They do not prove deployed Cloud alarms, physical host/database suspension, new-host recovery or Native capacity settlement. The original30-second retry remains below the Cloud270-second minimum wake lead. The merge projection also includes actual master `c3180398faca815fed7a62674bd4b0c4e88884ae`, whose common completion path now sends deferred/recovery notifications. Its unpublished normal merge tree is `16b028d57150f8caa576e913f38343a365b542dd`. Normal Shared/SDK, Runner TypeScript and the full App graph pass on that combined source. One unchanged ordinary-issue acceptance case was rerun there: an actual failed process retains the original automatic retry deadline, admits one useful successor, and passes the settlement, authority and no-duplicate assertions. It passed in 45.055 s; 18 filtered registrations are not acceptance. All known owners and groups closed, and the independent final database audit found zero remaining test sessions. The successful database was removed normally. Recorded worker socket peak is unavailable for this run; parent-process zero values are not used as worker measurements. All 29 Legacy-owned paths and every unrelated master blob and mode are preserved. Two outside-diff review observations concern existing waiting-chat compaction and cross-host Native result-lease recovery. Their files are byte-identical to current master. This focused Legacy change does not fix or qualify those separate paths. ## Risks Settlement proves exact local closure. It does not cover live provider work, Native ownership, cancellation, costs, claims, cleanup debt or changed authority. Independent checks remain. Ship normal migration0439 with the reader and writer. Preserve executable history and the newest five snapshots0435–0439. Generate the MCP child's next migration normally after this parent. The prerequisites are merged; the final remote checks must use this integrated exact head. This proof uses controlled local processes and external PostgreSQL. It does not establish deployed Cloud alarm acceptance, physical host or database suspension, cold host recovery, or R5 Native capacity settlement. The30-second retry is below the Cloud minimum wake lead. This focused repair follows the roadmap's bounded recovery and Cloud deployment work. It adds no new provider policy. ## Model Used OpenAI `gpt-6.1-sol` assisted with readers, fixtures, source review and verification through Codex. A coordinating GPT-6-family agent implemented and reviewed shared lifecycle wiring and integration. Tools included Git, native TypeScript checks and controlled tests. Exact served revisions and context limits were not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used and its available capability details - [x] I have checked ROADMAP.md and related work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have linked existing public work and described the issue - [x] I have not included internal issue IDs or private links - [x] My branch name describes the change - [x] Required focused checks pass at their explicitly recorded source/carry scopes above - [x] I have added or updated meaningful tests - [x] I have recorded the internal contract and migration requirements - [x] I have documented risks and evidence limits - [x] All required published exact-head Paperclip CI gates are green - [x] Published exact-head Greptile is 5/5 with no open findings in this focused diff; separate unchanged master observations are identified above - [x] I will address reviewer findings before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-07 00:56:04 -06:00
Dotta Paperclip Codex	839d41aabb	fix(server): retire owned plugin listeners before idle sleep (#19358 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Plugins receive durable agent lifecycle events through a registered host. > - The host uses a PostgreSQL LISTEN connection to wake delivery. > - An idle report could return `none` while that host-owned connection stayed open. > - This change gives that listener an exclusive owner and closes it during the current idle hold. > - Release or expiry restores listening before journal replay. > - Failed close and pending work continue to block sleep. ## Linked Issues or Issue Description Refs #18988, which is now merged. This focused ten-file change now targets master. Current integrated candidate: `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`, with actual master `644ee66f5d4ae8365fe8b9eca57df2be7405b5ab` preserved through normal merges. No history was rewritten. What happened? A normal local App with an installed lifecycle plugin could return an idle `none` report while its lifecycle LISTEN backend and socket stayed open. Expected behavior The host must close its own listener before it reports idle safety. It must retain other subscriptions, durable events, company scope, retry deadlines and useful reactivation. Steps to reproduce Start the normal server with a lifecycle plugin. Create an agent and wait for its durable acknowledgment. Stop the server, create another agent while it is stopped, and restart with the same files. Request an owned idle hold after ordinary replay. Check the exact listener backend and matched Node socket before shutdown. Let the valid hold expire naturally, then make an ordinary authorized agent update and check its durable plugin acknowledgment. Live executing or persistent preview services remain active. The separate hosted preview dependency [paperclip-cloud#478](https://github.com/paperclipai/paperclip-cloud/pull/478) retains its own App and operator prerequisites. This PR does not claim deployed preview or suspension acceptance. ## What Changed - Add a private, exclusive database listener owner that inherits the normal client policy. - Prepare plugin lifecycle retirement after native retirement under the same current idle hold. - Use one delivery-eligibility helper for dispatch and idle journal inspection. It preserves the same manifest, capability, company-disable query, and skip rules. - Close only the owned listener. Keep failed close ownership and inspection failures visible. - Resume listening on normal release or expiry, before journal replay. - Preserve disabled-feature retry history and the original deadline on re-enable. - Await lifecycle disposal during normal shutdown and consumer teardown. - Add owner regressions and document the lifecycle contract. ## Verification Current integrated source: `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1`. Fresh normal Runner TypeScript passed in 0.785 seconds. The complete normal App layered semantic check passed in 28.284 seconds. All tracked source, the lockfile and the 18 separate private witness inputs stayed unchanged. Known compiler owners closed and the isolated temporary home was removed. Current product qualification: at measured integration `896cc9b62993e6ed10418d7a7417e1ddbf8dc89c`, all three whole files passed with no failures or skips: lifecycle delivery 40, runtime hooks 20, and runtime assignments 24. The actual physical LISTEN and natural-expiry controls passed. All owned clients and captured processes closed. Independent final session checks were zero before normal deletion of each successful test database. Normal full-App physical retirement: the original case passed in 47.574 seconds. It exercised real startup, readiness, SDK callbacks, durable ACK, foreign-company exclusion, physical stop, offline input and cold replay. The initial unknown hold and its ordinary release remain in the evidence. After the original 30.5-second cadence, a new valid hold returned quiescent. The exact current cold-App LISTEN backend and its matched Node socket closed before server stop. Normal full-App natural expiry: the separate original case passed in 77.391 seconds under its original 90-second body cap. The final valid 30-second hold expired naturally. A new listener backend and matched current App socket appeared before fresh input. An ordinary authorized agent-name PATCH produced journal event 20, the actual SDK callback and durable ACK. Foreign exclusion and readiness assertions passed. The final measured hold had no manual release, replacement hold or shortened TTL. The original preparatory unknown hold, ordinary release and 30.5-second cadence remain explicit. Both App cases used the normal current server helpers and actual SDK bundling/worker entry. A private compatibility change supplied the same owned HOME at the exact existing child-fork boundary. It did not change the product helpers, business assertions or timing limits. These separate acceptance fixtures remain outside the focused product diff. Source carry to the current candidate: all nine other owned files, listener mechanics, actual producer paths, SDK paths and measured hold behavior are unchanged. The sole owned intersection from newer master is an independent environment-delete cleanup callback in `app.ts`. The plugin witnesses do not call that route. Normal merges preserve every unrelated master blob and file mode. The fresh current semantic checks above qualify the integrated source. New master Native crash-recovery and saved-copyback Retry capabilities are not claimed by these plugin cases. Actual master merge target: newer master contains retained plugin Runner release/resume and other Native recovery fixes. The projected combined target passed fresh normal Runner TypeScript in 0.799 seconds and the full App semantic check in 29.715 seconds. All ten plugin-owned blobs and modes remain exact to the published head; every unrelated master change is preserved. The measured plugin cases create no Native provider turn or warm Native session. The unchanged native-first/plugin-second ordering still checks the native result before listener retirement. Later sparse-checkpoint and Native response-publication changes do not enter those paths. This is a scoped source carry, not new hosted Runner acceptance. Failures retained: an earlier reactivation fixture's real timer returned one millisecond before its original wall-clock expiry. Its private fixture now waits any positive remainder and retains the same expiry assertion and limits. The earlier partial-composition `unknown` result remains distinct from normal-startup proof. Current qualification also exposed missing normal workspace dependencies and a private guard that assumed loose Git refs. Normal owned dependency setup and an exact loose-or-packed reader fixed those setup failures. No business assertion, timeout, permission boundary or product sleep gate was relaxed. Repeat focused product coverage with a fresh external fixture database and the normal server Vitest command, one worker: ```sh pnpm --filter @paperclipai/server exec vitest run src/__tests__/plugin-lifecycle-delivery.test.ts --maxWorkers=1 --no-file-parallelism pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-hooks.test.ts --maxWorkers=1 --no-file-parallelism pnpm --filter @paperclipai/server exec vitest run src/__tests__/agent-runtime-assignments.test.ts --maxWorkers=1 --no-file-parallelism ``` Exact current head `0f83005122ef1bdb1f1e08f8f58424c9a840ebb1` has 60 successful checks, three skips and one neutral result, with no pending or failing contexts. Greptile completed its full review at 5/5 with no actionable issue. All root and nested review pages were read; the earlier eligibility finding is resolved. Ponytail's latest turn stopped before a verdict. A normal retry was requested; no current Ponytail verdict or score is claimed. Previous `3ca86ec` CI and scores are historical. A full local repository typecheck/test/build or browser run is not claimed. Controlled local App/SDK/PostgreSQL proof does not establish live provider, deployed Railway/Neon suspension, signed Cloud alarms or global exactly-once delivery. ## Risks - A listener close failure or uncertain inspection must continue to block sleep. - Release, expiry, configuration changes, and journal arrival can race with retirement. Epoch and current-hold checks retain conservative results. - Delivery remains at least once across uncertain ACK boundaries. This change does not add global exactly-once delivery. - The database helper closes only its exclusive listener client. Other owners and subscriptions keep their resources. ## Model Used OpenAI `gpt-6.1-sol`, reasoning and code/tool use. The managing Codex agent implemented shared database/composition seams and reviewed the change; its exact model ID was not exposed. The runtime does not expose a verified context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-11-06 22:56:47 -06:00
DottaandPaperclip	374a918d67	fix(runner): retain qualified OpenCode artifacts for cold recovery (#19622 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native recovery must keep admitted provider state and useful workspace files. > - OpenCode binds its saved session to exact executable paths and hashes. > - A replacement image can remove those files even when session data is saved. > - Retaining a manifest alone cannot restore the missing launch files. > - This pull request saves the qualified files before provider work and restores the same owned paths. > - The benefit is cold continuity without relaxing the Runner guard or replaying a prior turn. ## Linked Issues or Issue Description Refs #19558. That fix retains the selected pack for ordinary continuation. This change adds durable file retention for a cold allocation. Related #19487 adjusts the admission budget; it does not retain launch files. A search of open and closed OpenCode cold/durable artifact PRs found no duplicate. What happened? A saved OpenCode session could outlive the image that supplied its Node executable, proxy, and native executable. A new image supplied different bytes. The Runner then correctly refused the changed launch profile. The saved harness did not contain the old files. Expected behavior Core must save qualified launch files before the first turn. It must restore those exact files under the same owned account and absolute paths. Unknown ownership, missing files, and changed hashes must still stop recovery. Steps to reproduce Start an admitted remote OpenCode session. Save its workspace, encrypted checkpoint, and harness data. Destroy the original allocation and controller files. Restore into a new allocation with an image whose qualified proxy has different bytes. Resume the same session. The new opt-in local qualification command automates this path with actual OpenCode and a local synthetic model. ## What Changed - Store company-bound, encrypted launch objects and canonical run/backup references. Generate migration 0438 through the normal database workflow. - Stage qualified Node, proxy, and native OpenCode files under a private content-addressed OS-account home. Record the account UID and exact launch paths. Preserve the Rust profile guard. - Gate first provider work on durable capture under the current native claim. Bound Stop/deadline waits while the actual late transfer keeps its worker and scratch ownership until settlement. Restore cold caches with verified staging and atomic rename. Keep live reattachment and historical image-rooted sessions on their existing paths. - Reuse bounded canonical expiration owners. Atomically fence old checkpoint authority with a strict company/run-scoped retirement marker before external deletion. Keep its indexed cleanup anchor across failed deletes and restart. Preserve earlier resume handles and reject later header or source-consumer writes. Add no idle scan or network call inside a transaction. - Add storage, race, executor, filesystem, and actual Rust resume regressions. Add the opt-in local Linux qualification command and operating limits in `doc/opencode-cold-recovery.md`. ## Verification - RED before repair: real PostgreSQL/AES cold restore lacked the launch files; normal executor preparation chose the new image pack. Separate regressions exposed lost upload receipts, missing cache repair, last-owner retirement, an account-UID mismatch, and a resume-handle race during external deletion. Each expected failure was captured before its repair. - Local qualification before the final master integration: 1,169 executor tests, 233 storage/archive/admission/expiration tests, all seven server typecheck layers, migration safety, and the actual Rust cold-resume test passed. - The maintained Linux command passed with two cached immutable Paperclip images whose proxy hashes differ. It removed the original account/controller trees, restored the production published cwd under a new lease, resumed the same actual OpenCode session, kept a useful file and prior model context, and made one new synthetic model request. No external model call or network was available in either container. - The object-store fixture uses real encrypted StorageService streams with an independent owned local directory. It is not hosted S3 acceptance or a complete task HTTP/actor workflow. Historical tasks still require normal effects reconciliation and recovery after deployment. - Review regressions reproduced partial-cache publication, resume-versus-deletion, fresh-writer and source-consumer resurrection, and unbounded Stop/deadline waits before each repair. They now pass through real filesystem, encrypted storage, PostgreSQL, and SDK boundaries. File validation is split from database ownership (384/831 source lines). - Clean runtime head `aadab7acc69ff959678030db46ffe2dcfbefe28f`: the maintained actual OpenCode cold qualification passed with `dirty:false`. It preserved the provider session and recorded launch paths, restored useful workspace content and prior model context, and made exactly one resumed synthetic model request. The 314,560,000-byte launch capture took 23.118 seconds; the later harness was 833,536 bytes. Subsequent repairs change backup-reference retirement and governed continuity-cache classification; capture, restore, launch, and published-workspace inputs are unchanged, so that runtime receipt remains scoped to those paths. The continuity-break consumer is verified separately. - Retention repair `c14d386cecf7123257918ba6a8d47307df2da397`: 68/68 affected real PostgreSQL/AES storage tests and 15/15 focused executor authority/admission cases pass. All seven server typecheck layers pass (source layers and unchanged test shards, with the final 590-file test layer repeated after fixture edits). All review threads have evidence-backed resolutions. Its subsequent CI caught the separate lifecycle-classification gap described below. The refreshed Paperclip review reported paused work, not a completed new review. - Final head `4d1cd3e3309e328b11abc85adc6d78c6d0c7f55d`: all 19 focused root-entry/executor cases and all three source declaration layers pass. [Greptile reviewed this exact head at 5/5](https://github.com/paperclipai/paperclip/pull/19622#issuecomment-6695984874). Final-head [CI verification](https://github.com/paperclipai/paperclip/actions/runs/42308908167/job/128214100339) passes: 60 successful checks, five conditional skips, and the explicitly neutral paused Paperclip review. No check is pending or failing. - CI also caught the launch cache missing from the session-root lifecycle contract. Both the writer scan and a real governed-replacement consumer failed locally before repair: old launch bytes remained in the active root. The cache now archives with the prior session state; the consumer verifies exact bytes are preserved in the archive and absent from the active root. - The latest review found that backup retirement could delete an independent run pin while a selected session retained the checkpoint. A real PostgreSQL/AES regression failed before the repair. Backup-only ownership now uses a NULL-safe exact backup predicate; the run pin belongs to fenced checkpoint expiration. The regression verifies checkpoint decryption and launch-file restoration after pending-backup cleanup, followed by deletion only after removing the final resume handle. - An executor first-session case checks new-session durable capture through the real capture helper and receipt propagation into the actual harness manifest at the backup boundary. Real storage cases verify the run-profile receipt and canonical backup/run pins. - Sequential closure reuse and simultaneous first admission are different scopes. A deterministic two-uploader test measures both independent uploads, one verified ready winner, loser-only deletion, and usable restoration for both runs. Each capture is bounded to 512 MiB and five minutes; up to three pending receipts per run are retained. There is no claim of global single-flight capture or a company-wide egress bound. - Earlier optional warm-ownership verification encountered missing local binaries. After exact-source setup, all nine ownership assertions passed; two other suites encountered local PostgreSQL setup/teardown contention, so those interrupted attempts are not passes. Required current-head CI supplies the broad final coverage. No deployment or hosted historical recovery is claimed. ## Risks - This adds two tables and a forward migration. The file object is bounded to 512 MiB. Capture adds one initial transfer; later harness archives exclude those large files. Company-scoped ready objects are shared and retained until the last canonical owner retires. Concurrent initial admissions can duplicate bounded transfers; each keeps independent ownership and cancellation rather than waiting on another controller. A continuity break retains the controller cache with its prior state until normal session-root cleanup, adding up to one bounded launch closure per retired state. - Cold continuity requires the same qualified Linux platform, supported runtime dependencies, owned account UID/home, and published absolute cwd. A mismatch fails closed. No alias or Rust guard change is included. - Existing image-rooted profiles have no retained file object. This change cannot backfill missing historical binaries. A fresh governed session must reconcile prior effects first. - Live reattachment does not read artifact objects. Storage or provenance failures before a new turn hold admission. They do not grant new execution, model, tool, or replay authority. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and local browser tools. The exact served model ID and context window are not exposed in this session. No claim is made for unavailable model metadata. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-06 17:30:00 -06:00
Nicky LeachandClaude Opus 5.5	21a1e78852	feat(environments): add managed plugin environment rows (#19490 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A managed instance gets its instance-level environments from the `PAPERCLIP_MANAGED_CONFIG` document > - That document cannot declare a plugin environment yet, so a managed instance cannot get a plugin-provided environment without manual setup > - The full change is split into three pull requests. This first one adds the plugin environment rows and their write floor, and nothing calls them yet > - The second pull request lets the managed config declare plugin entries and provisions them at boot. The third sets the instance default once and advertises the new managed-config capability > - The benefit is a smaller review for each step, and no instance changes behavior until the last step lands ## Linked Issues or Issue Description Subsystem affected Server environments (managed-config environment provisioning, environment routes) and the board UI's adapter Test target. Problem or motivation A managed instance cannot get a plugin environment from its managed config. Company settings cannot create one either. So each managed instance that needs one requires manual setup. Proposed solution Over three pull requests, let an `environments` entry in the managed config declare `driver: "plugin"`. Boot then provisions one locked row for each plugin entry, and makes one of them the instance default once on new instances. This pull request adds only the row layer: create or adopt a marked row, archive it, find it, and keep tenants from editing it. Alternatives considered Manual setup on each instance, and a new control-plane endpoint. Both need a step outside the deploy. The managed config already delivers the sandbox entry. Roadmap alignment This extends the existing managed-config `environments` section, which already provisions the managed sandbox. It adds no new product surface. ## What Changed - New `server/src/services/managed-plugin-environments.ts`, used through new `environmentService` methods (`ensureManagedPluginEnvironment`, `archiveManagedPluginEnvironment`, `findManagedPluginEnvironment`): - The ensure validates the driver config through `normalizeEnvironmentConfig` and `validatePluginEnvironmentDriverConfig`, the same path an operator-created plugin environment takes. - It marks the row `managedByPaperclip: true` and `managedPluginEnvironment: "<pluginKey>:<driverKey>"`. - It adopts an existing unmarked row for the same plugin and driver instead of adding a second one, so a hand-made row keeps its agents. - A row that already matches gets no write. Changes write activity log entries. - Archive sets an active marked row to `archived`. The next ensure reactivates it. - Migration `0437`: unique index `environments_managed_plugin_environment_idx` on `metadata ->> 'managedPluginEnvironment'`. This is the only schema change of the three pull requests. Snapshot `0432` is pruned to keep the five newest. - `server/src/routes/environments.ts`: `isPlatformProvisionedEnvironment` also covers the new marker (write floor and redaction). `managedPluginEnvironment` is a reserved marker key, so a client cannot stamp it on its own row. Nothing provisions marked rows yet, so the marker-clear escape hatch stays open for them. The next pull request refuses it while the managed config declares the row's entry. - `ui/src/lib/adapter-test-environment.ts`: `resolveManagedSandboxEnvironmentId` requires `driver === "sandbox"`. The plugin row also carries `managedByPaperclip`, so the old "not local" check could take it for the managed sandbox. ## Verification - `cd server && npx vitest run src/__tests__/managed-plugin-environments.test.ts` (embedded Postgres): - The ensure creates the marked row through the plugin validator. A second ensure writes nothing and logs nothing. - A hand-made row for the same plugin and driver is adopted. It keeps its id and its agents. - Archive, then ensure, reactivates the row. - The ensure refuses while the plugin has no running worker, and refuses a name that another environment holds. - The unique index allows one row per marker. - `npx vitest run src/__tests__/environment-routes.test.ts`: on a cloud-managed instance, edit, env-var edit, status change and delete of a marked plugin row are refused, including for instance admins. The marker alone keeps the floor. A client cannot stamp the marker. The marker clear is allowed. - `npx vitest run src/__tests__/environment-service.test.ts`: passes. - `cd ui && npx vitest run src/lib/adapter-test-environment.test.ts`: the plugin row is never taken for the managed sandbox. Under managed-sandbox-only, an agent on the sandbox tests in the sandbox, and an agent on the plugin environment tests there. - `pnpm --filter @paperclipai/server typecheck`, `pnpm --filter @paperclipai/ui typecheck` and `pnpm --filter @paperclipai/db check:migrations` pass. - I did not run the full `pnpm test:run`, `pnpm -r typecheck` or `pnpm build`. CI covers them. `pnpm verify` asks for broader verification because of the migration. ## Risks - Migration: one new partial unique index on a small table. No row carries the marker before this change, so the index cannot fail on existing data. - No caller uses the new ensure yet, so no instance changes behavior. - The UI change affects only lists that hold a non-sandbox row with `managedByPaperclip`. Today that is only the local row, which the old check already excluded. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, through Claude Code with tool use (file edits, shell, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 16:52:43 +00:00
DottaandClaude Opus 5.5	7e3caa7bac	fix(tree-control): resume work a pause gate refused after release (#19421 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The board can pause an issue tree. A pause stops work. Resume or release must continue that work once. > - PR #19394 made release re-dispatch a run that a pause Stop cancelled. > - That rule covers only a run that an operator Stop ended and that the hold snapshot named. > - A scheduled retry that comes due during a pause is not stopped. The dispatch gate cancels it with `issue_paused`. The release did not see it as owed work, so the task stalled with no run. > - This pull request makes every gate that refuses work for a pause record the covering hold. Release then re-dispatches that work exactly once. > - The benefit is that a paused task with a parked retry or a queued run continues after release, with no manual wake. ## Linked Issues or Issue Description Refs #19394 What happened? A child task had a `workspace_busy` scheduled retry. The board paused the parent tree. The retry came due during the pause. The scheduled-retry gate cancelled it with `issue_paused` ("Scheduled retry suppressed because the issue is held by an active subtree pause hold"). The board released the hold. Four minutes later the child was still `in_progress` with no run, no execution blocker, and no new activity. Expected behavior Release (or `mode: "resume"`) re-dispatches the refused work exactly once. No reconciliation and no user message are necessary. Stranded-issue recovery does not add a second run. Steps to reproduce 1. Give an assigned child task a parked `workspace_busy` scheduled retry. 2. Pause the parent tree. 3. Let the retry come due while the pause is active. The gate cancels it with `issue_paused`. 4. Release the pause. No run starts for the child. Paperclip version or commit master at `4d49a31286` (includes #19394). Agent adapter(s) involved Not adapter-specific (core bug). ## What Changed - `issue-tree-control.ts`: add `ISSUE_PAUSED_ERROR_CODE` and `pauseSuppressionResult()`. A gate records `treeHoldSuppression: { holdId, rootIssueId }` on a run that it refused for a pause. - `findOwedPauseResume` now treats the latest run as owed when it is an `issue_paused` cancellation under a pause hold. It uses the recorded hold. For an unmarked run (a scheduled retry cancelled before this change), it uses a snapshot pause that was active at cancellation. The operator Stop rule does not change. - Scheduled-retry gate (`run-dispatch/adapters/postgres.ts`, `cancelSuppressedRetryInTx`): locks the pause row `FOR SHARE` and records the covering hold. A concurrent release either sees the refusal, or the retry sees no pause and runs normally. - Queued-run claim gate (`heartbeat/queue.ts`): cancels with `issue_paused` and the hold marker, after the agent start lock is released. Before, the cancel re-entered that lock from inside it, and the agent's queue stalled until the 30-second stale-lock timeout. After the refusal is saved, the gate re-checks the hold and resumes the task itself if release already finished (`resumeIfPauseAlreadyReleased`). - Release (`issue-tree-resume.ts`, route): revisits the snapshot members and every task with a run refused for that hold, also when `wakeAgents` is set. This covers tasks created under the tree after the snapshot and tasks moved out before release. - `packages/db`: partial index `heartbeat_runs_tree_hold_suppression_idx` (migration 0436, `CREATE INDEX CONCURRENTLY`, registered as a top-level migration) for that lookup. - Docs: `doc/execution-semantics.md` (gate-refused work, race handling, non-assignee and pre-fix scope) and `doc/DATABASE.md` (index). ## Verification - Red before the fix, green after: `pnpm --filter @paperclipai/server exec vitest run src/__tests__/issue-tree-pause-resume-run.test.ts` (21 tests). - "resumes a parked retry the pause suppressed exactly once after release / resume / legacy": before, `expected [] to have a length of 1` (no resumed run). After, one `issue_tree_resumed` run with `interruptedRunId` = the suppressed retry, no execution blocker, and the task finished. `reconcileStrandedAssignedIssues` added no run during the hold or after release. - "resumes a queued run the claim gate refused during the hold exactly once": before, the test timed out at 15 s (start-lock re-entry). After, the run is cancelled with `issue_paused` and the hold marker, and release re-dispatches it once. - "resumes a refused retry on a task moved out of the paused tree before release" and "... on a task outside the snapshot when release also wakes members": review findings, one resume each. - "leaves a due retry parked when the pause is released while the gate refuses it": the test waits until the gate blocks on an uncommitted release. The retry is not cancelled and runs once. Without the `FOR SHARE` lock the gate does not wait and the test fails. - "resumes work a gate refused after the release that should have resumed it had finished": the late-refusal re-check resumes once, and a repeated check does not dispatch again. - "does not resume a paused-code cancellation that no pause hold covered": negative case. - Related suites pass locally: `src/__tests__/issue-tree*`, `src/modules/run-dispatch`, `src/services/heartbeat/queue.test.ts`, `heartbeat-dependency-scheduling`, `heartbeat-workspace-busy`, and `packages/db` `client.test.ts`. - I did not run a live staging check here. Staging APIs are not reachable from this environment. ## Risks - Migration 0436 adds a partial index on `heartbeat_runs`. It is built concurrently and covers only cancelled runs with the marker, so it is small. - The scheduled-retry gate now takes a `FOR SHARE` row lock on the pause hold before it cancels. Release updates that row, so the two serialize briefly. Release does not lock issues or runs, so the lock order cannot deadlock with the gate's issue-then-run locks. - The queued-run claim gate now records `issue_paused` in place of the generic `cancelled`. Stranded recovery already classifies `issue_paused` as non-retryable. The pause resume owns that work, so recovery does not add a second run. - Scope limits (documented): a non-assignee run refused by a pause is not replayed, the same as non-assignee wakes that admission drops during a hold. Among pre-fix rows, only scheduled retries carry `issue_paused`, so only those fall back to the snapshot. A pre-fix row whose hold is already released does not self-recover; the staging task that showed this bug needs one manual wake, or a new pause and release. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-06 03:03:15 -06:00
DottaandClaude Opus 5.5	5c185db77c	fix(tree-control): resume work a subtree pause interrupted (#19394 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Task tree control lets the board pause a task tree and then resume it. > - A pause stops the runs that are active in the tree. The release must then continue the work that was pending. > - A child task whose run was active at pause time did not start again after release. The child became blocked and asked for a user message. > - A pause is an operator hold, not a failure. It must not strand work, and it must not require reconciliation for a run that never started. > - This pull request re-dispatches interrupted work one time on release, and it settles a legacy Stop that never entered the adapter. > - The benefit is that pause and resume keep a task tree moving without manual recovery, and real safety gates stay in force. ## Linked Issues or Issue Description What happened? A parent task delegated two children. One child's run was active (in host workspace preparation, before the adapter started) when the board paused the parent's tree. The pause cancelled that run. After the board released the hold, no new run started for that child. The child became `blocked` with the execution blocker cause `legacy_execution_requires_reconciliation`. Later the next action became "Send a message to continue." A sibling child that had no active run at pause time resumed normally. Expected behavior A run that a subtree pause cancels is an operator hold. On release, the pending work starts again one time, automatically. It does not go through execution reconciliation when the run never entered its adapter. It does not wait for a user message. Steps to reproduce 1. Create a parent task and a child task that is assigned to an agent. 2. Wake the child. While its run is in host preparation (or queued), call `POST /api/issues/:parentId/tree-holds` with `{ "mode": "pause" }`. 3. Call `POST /api/issues/:parentId/tree-holds/:holdId/release` without `wakeAgents`. 4. Before this change, no new run starts, and `getExecutionBlocker` reports `legacy_execution_requires_reconciliation` for the child. Root cause - (a) The pause records each interrupted run in the hold member snapshot (`activeRunId`). Nothing used that record on release. - (b) Release woke tasks only when `metadata.wakeAgents === true`. Without it, release relied on stranded-issue recovery. That recovery stands down when the latest run was cancelled by an operator (`isOperatorCancelledRun`). So the interrupted child had no owner. - (c) The pause Stop of a legacy run in preparation is written directly as `cancelled`. Legacy terminalization classifies a cancelled run with no bootstrap evidence as an unknown outcome. It records `legacy_execution_requires_reconciliation`, although the gated dispatch never entered the adapter. - Native runs: the verified native Stop does not create the reconciliation hold, but gap (b) applies to native runs too. The release change is runtime-independent. ## What Changed - `issueTreeControlService.findOwedPauseResume` decides if a task is owed one resume. The task's latest run must be an operator Stop that a pause hold member snapshot names, recorded while that hold was active. The task must still be executable by the same agent, and no pause may still cover it. The obligation belongs to the run, so overlapping pauses keep it until the last covering release. - New `services/issue-tree-resume.ts` re-dispatches owed work with wake reason `issue_tree_resumed` (`holdId` and `interruptedRunId` in the context). A compare-and-set claim (`treeHoldResume`) on the interrupted run makes the resume happen at most once. A failed wake returns the claim. - Pause release and `mode: "resume"` call it for every member of the released hold, also without `wakeAgents`. When `wakeAgents` is true, the existing loop wakes every executable member. - A task that still has an execution blocker is not replayed. The release writes `issue.tree_resume_wake_skipped`, the blocker stays visible, and the obligation stays unclaimed. - `releaseHold` updates only an `active` hold. A repeated release gets `409`. - `settleCancelledLegacyPreparation`: when the executor that owned a cancelled legacy run proves that dispatch never entered the adapter, it records bootstrap evidence and resolves that run's `legacy-execution:<runId>` hold as `false_positive`. It also corrects an automatic no-replay disposition and restores a `blocked` status only when that disposition made the change. Then it re-dispatches owed work, for a release that happened while the Stop was unwinding. It requires a requested Stop with no existing recovery receipt, and no process, session, native finalization, unreleased lease, or execution-start event. - `settleUnrecoverableExecutions` waits while a legacy executor still holds its controller lease, and records a `legacyCancellationBlock` receipt when it blocks a task for a cancelled legacy run. - Docs: `doc/execution-semantics.md` and `doc/composer-stop.md` describe the resume rule. ## Verification - New regression `server/src/__tests__/issue-tree-pause-resume-run.test.ts` uses embedded Postgres, the real heartbeat, and the real tree-control routes: - A run paused during preparation: nothing runs during the hold, there is no blocker, and release creates exactly one `issue_tree_resumed` run that succeeds. A second release returns `409` and creates no run. - Release before the stopped preparation finishes unwinding (with the periodic disposition run in between): exactly one resumed run after the executor settles. - An automatic no-replay disposition that ran first: the blocker clears, the status returns to `in_progress`, and release resumes once. - Overlapping child and parent pauses: no resume while the parent pause remains, then exactly one resume after it is released. - A queued run cancelled by the pause: release creates exactly one resumed run. - A task reassigned to a user during the hold: no resume. - A mid-turn legacy Stop with unknown outcome: no replay, the reconciliation blocker remains, and `issue.tree_resume_wake_skipped` is logged. - Red before each fix: the first 4 cases failed on master; the 3 review cases failed on the first PR commit. All 7 pass now. - Also passed locally: `issue-tree-control-routes`, `issue-tree-control-service`, `heartbeat-workspace-busy`, `heartbeat-undispatched-execution-wait`, `execution-control-work`, `legacy-workspace-restore-recovery`, `legacy-continuation-authority`, `task-retry`, `legacy-execution-recovery`, `agent-conversations`, `heartbeat-retry-scheduling`, `satisfied-connection-intents`. - Not verified here: a live staging pause/resume. Re-check on staging after deploy. ## Risks - Behavior change: release now starts the work that the pause interrupted, also without `wakeAgents`. Before, that work stayed idle. Other idle tasks still wake only with `wakeAgents`. - The settlement trusts the executor's adapter-entry flag. The flag is set only inside the atomic dispatch gate, which refuses a cancelled run. The settlement also requires no process, session, lease, or execution event. - A native run whose Stop has not finalized at release time is not a target. Stranded recovery and explicit wake still apply. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edit, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-05 22:08:01 -06:00
DottaandClaude Opus 5.5	958f9aa9f3	feat(issues): limit agent-created task trees to parent and child (#19312 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents split work into tasks. A task can have a parent task. > - Today agents can nest tasks to any depth: parent, child, grandchild, and deeper. > - Deep agent-made trees are hard to follow, and an agent that works on a child task makes grandchildren by default. > - This pull request limits agent-created trees to two levels: a top-level task and its children. > - A request for a grandchild does not fail. The server puts the new task beside the requester and tells the agent. > - Board users keep full control. They can still nest to any depth. Existing deep trees stay valid. > - The pull request also records which task created each new task, so the audit trail stays complete when the parent changes. ## Linked Issues or Issue Description No public issue exists. This is the feature description. Related: #16853 (budgets that include descendant work) also reasons about task trees; this change does not alter its traversal. Subsystem affected Issues (tasks): create, child create and move in the issue service and routes. Agent tools, chat suggestions and creation provenance use these paths. Problem or motivation Agents create subtasks as deep as they want. An agent that runs on a child task gets that child as the default parent, so its follow-ups become grandchildren. The trees become deep and hard to read. The parent link is also the only record of which task created a follow-up, so that record is lost when the parent changes. Proposed solution Limit agent-created trees to a parent and its children. When an agent asks for a grandchild, put the new task under the requester's parent and return `parentAdjusted`. Do not reject the request. Keep board users unrestricted. Record the originating task in a new server-set `origin_issue_id` column. Keep `origin_run_id` as the originating run. Alternatives considered Reject grandchild requests with an error. We did not do this, because agents then fail mid-task. Add a database constraint. We did not do this, because existing deep trees must stay valid and nesting can return later. ## What Changed - Add `MAX_AGENT_TASK_HIERARCHY_DEPTH` (2) and the `IssueParentAdjustment` type in `packages/shared`. - Add `resolveNewTaskParent` and `planIssueParentChange` in `server/src/services/issues.ts`. `create`, `createChild` and `update` use the agent limit by default (`parentDepthPolicy: "flatten"`). - The issue create, `/children` and PATCH routes pass `allow_nested` for board users. For agents, the routes check authorization against the parent that the server actually writes. - The requester keeps its behavior when the server moves a task beside it: `blockParentUntilDone` blocks the requester, and the new task inherits the requester's workspace and privacy. - The server never moves a task above a low-trust boundary root that contains the requester. - These subsystems keep any depth, because they find their work by parent: watchdog reviews, monitor recovery, email-channel placement, and routines that a person configured. - An agent move of a task that has children skips only the parent change and returns `reason: "has_children"`. - Add `issues.origin_issue_id` (nullable, `on delete set null`, indexed) in migration `0434`. Only the server sets it. The `createdFrom` detail field, the `createdFromIssueId` filter and task-creation provenance read it first. - Chat prompts now let a chat agent create one task, a task with children, or separate tasks. The conversation is never a parent. - The runner `create_task` tool accepts an optional `parentTaskId`. A chat agent can create a top-level task and then put subtasks under it. The run must be able to read and change the parent. A conversation is never a parent. The depth limit still applies. Project tools map the field to `parentId` through the issue route. The protocol manifest, semantic contracts and eval fixture are regenerated. - Watchdog runs that have an active watchdog keep their requested parent on all create paths, because their access is limited to the watched subtree. - Fix a bug that the test drive found: the chat (MCP) `create_task` ignored the requested `status`, so a `backlog` task became `todo` and started to run. It now uses the same rule as the native tool. - Update `skills/paperclip`, `doc/SPEC-implementation.md`, and add the plan `doc/plans/2026-11-05-two-level-task-hierarchy.md`. ## Verification - `cd server && npx vitest run src/__tests__/agent-task-hierarchy-depth.test.ts src/__tests__/agent-task-hierarchy-depth-routes.test.ts`: 19 new tests for service and route behavior, all pass. - Related suites (64 files: issues service, thread interactions, privacy, watchdogs, provenance, runner tool authority, decisions, routines, project tools): 1208 tests pass. Two tests changed because of the intended behavior and pass now. Two `email-channels.integration` tests fail locally because the test cannot find a bundled skill file from this worktree path. This change does not touch that code. - `packages/db`: migration safety, snapshot drift and journal tests pass. - Typecheck passes for `server`, `packages/shared`, `packages/db`, `cli` and `ui` (local `ui` errors come only from generated Storybook catalog files that are absent). - Local test drive on an isolated instance with real Claude agents: 29 of 29 use cases pass, including an agent on a child task (follow-ups placed beside it, with the notice) and a chat that creates a top-level task with three subtasks. - I did not run the full `pnpm test:run` or `pnpm build` locally. CI runs them. ## Risks - Behavior change for agents: some follow-ups that were grandchildren are now siblings. The parent of the requester is woken when all its children finish, which now includes these tasks. - The runner `create_task` input contract adds one optional field, so the protocol manifest and the pack contract change. The tool output does not change: it shows the actual `parentId`, and the activity log records `parentAdjusted`. - Migration `0434` adds a nullable column, a foreign key and an index. It does not backfill rows. - `IssueCreationSource.run` is now nullable. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edits, local test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-05 21:22:33 -06:00
scotttong Scott Tong Paperclip	f2593b7905	feat: make Coordinator and Agent Chat standard and speed up navigation (#19360 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People enter that work through the workspace, agent conversations, and tasks. > - Coordinator and Agent Chat still require experimental enrollment. > - Task link prefetches do not warm the compact queries used by the default task view. Chat also waits for a request when its navigation list already holds the conversation. > - This pull request makes Coordinator and Agent Chat standard and reuses the reads needed for navigation. > - People can choose Classic workspace in Experimental settings. Cached work can appear while fresh data loads. ## Linked Issues or Issue Description What existing behavior does this improve? Workspace selection, Agent Chat availability, and navigation between Chat, Tasks, and task details. Subsystem affected Cross-cutting: UI, workspace preferences, instance settings, and the database migration. Current behavior People must enable Coordinator and Agent Chat in Experimental settings. Opening a task can repeat requests because prefetch warms the full detail and comment queries, while the default view reads compact task data and a recent comment window. Opening Chat waits for a detail request even when the current person's conversation list contains it. Proposed behavior Coordinator is the standard workspace for everyone. Experimental settings offer Classic workspace, off by default. Old Coordinator experiment values do not select Classic. Agent Chat is available to everyone, including instances with an old saved or managed off value. Task link intent warms the queries used by the mounted view. Chat can use the current person's company-scoped conversation list during refresh. Reason and benefit People can use the standard workspace without setup. Repeat navigation can show cached content while the server refreshes it. Breaking changes Existing Coordinator experiment and Agent Chat off values no longer disable these surfaces. Classic requires an explicit new opt-in. The workspace API keeps its existing response shape and audit checks. The migration retains legacy values and adds a separate Classic preference. Execution permissions, company access, and chat privacy checks still apply. Additional context Roadmap check: this graduates existing surfaces and improves their navigation. It does not add a new agent execution capability. Duplicate searches found no open Coordinator workspace PR. Related server cache work, Refs: #17828, addresses compact issue-list invalidation; this PR addresses client navigation queries. ## What Changed - Add a default-off Classic workspace preference. Derive the existing workspace API response from that choice. Keep personal persistence, account isolation, and audited writes in the workspace preference service. - Replace the Coordinator experiment control with Classic workspace. Use Coordinator while preferences load. Update the existing settings examples and navigation recipe. - Retire the Agent Chat experiment control. Ignore old stored and managed off values. Retain the compatibility key and the existing execution and access checks. - Reuse account- and company-scoped chat list data with its original freshness timestamp. - Share compact task and recent-comment query options between prefetch and the task view. Keep full-history prefetch for Classic tasks and expanded history. - Add upgrade, replay, cache, account isolation, and browser switching regressions. Update product, database, development, and roadmap documentation. ## Verification - Targeted preference, settings, migration, cache, and UI regression tests passed during implementation. The cache tests hold refresh requests pending and check that content still renders. They also check account isolation and stale refresh behavior. - A real browser test verified fresh Coordinator defaults, Classic opt-in persistence, and return to Coordinator. It used an isolated source checkout with fresh data on macOS. - Token, migration numbering and safety, map, and Storybook catalog checks pass after the rebase. - Repository typecheck and build pass. Typecheck and token gates also pass after review repairs. The broad local run passed all six chat integration shards (1,931 tests). It then found the host-CLI-dependent recovery fixture described below. Its remaining duplicate work was stopped after the full current-head CI matrix passed; this is not a claim that the broad local command completed green. - Review repairs passed 419 UI/migration fixture tests, 19 Coordinator navigation tests, and all 214 tests in the five affected server suites. The 24 Chat/workspace browser tests pass, including standard Coordinator switching and explicit Classic persistence. - The broader browser repair run passed 85 tests. It retained two failed assertions and skipped five later serial cases. The affected files then passed all 11 tests after the fixes: reopen the desktop panel after reload and open More for Audit and Connectors. This includes the five serial cases that had not run. - The broad local suite exposed a recovery fixture that executed the host Codex CLI during a simulated remote probe. On a host with Codex 0.154.0, model fallback broke its fixed-model assertion. The fake sandbox now reports Codex 0.160.0. All 20 selected recovery/provider compatibility cases pass after the repair. - A CLI company import/export suite timed out during server startup in the second CI run. The port fallback is intentional in that fixture. No root cause was established. That suite passes on the final commit in CI. This records recovery, not a claimed product fix for the earlier timeout. - The first CI run exposed remaining assumptions about the retired flags and Classic UI. The repair commit updates those fixtures and navigation steps. It also restores the missing enabled Cases destination in Coordinator. Earlier local recovery attempts used the wrong fixture notification and advanced fake time during live execution; the corrected tests use the subscribed recovery queue and wall time during execution. - Greptile reviewed commit `98972b030d4505d838427a2fca6b196b8cad6d47` at 5/5 with no new comments. The original finding is resolved. - Current-head CI is green: 56 successful checks, with three checks skipped by workflow filters. This includes typecheck, build, the complete Vitest matrix, all eight browser shards, Runner verification, release checks, and security checks. [Final CI run](https://github.com/paperclipai/paperclip/actions/runs/42132651414). - Typecheck caught missing `pid` and `startedAt` fields in the simulated command result. The fixture now returns the complete process contract, and the server test-layer typecheck passes. - Storybook catalog alignment was checked. Storybook play tests were not run. Hosted latency and cold bundle loading were not measured. ## Risks - The new default changes the workspace for people who previously left the Coordinator experiment off. They can opt into Classic in Experimental settings. - The additive migration must run before the new server code. It is safe to replay and preserves explicit Classic choices. - Cached content can be stale during background refresh. Existing query invalidation and source timestamps still control freshness. - These changes reduce avoidable loading waits. They do not establish a measured improvement in hosted request latency or initial bundle download time. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, repository tools, code execution, and browser automation. The exact serving revision and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Scott Tong <scott@scottsmbpm5max.lan> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-05 16:28:25 -08:00
DottaandClaude Opus 5.5	bf10bc695a	feat(task): show the agent's context window in task properties (#19273 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents run through a harness (Codex app-server, or Claude through ACPX), and the runner turns harness events into Paperclip events > - Both harnesses report how full the model's context window is. Codex sends `modelContextWindow` with its token usage. Claude sends `used` and `size` in ACP `usage_update` > - Paperclip dropped both values. The task view could not show how close an agent is to compaction, and a compaction left no visible mark in the task chat > - This pull request carries the context-window occupancy through the runner, stores it with the existing usage events, and shows it as a "Context" row in the task Properties panel > - It also shows a "Context compacted · 230k → 38k tokens" divider in the task chat when the agent compacts its context > - The benefit is that operators can see when a long task is near its context limit and when the agent lost detail to a compaction ## Linked Issues or Issue Description Refs #19252 (same pattern: a canonical harness event turned into task-chat UI). Refs #19267 (status notices; it turns Claude's compaction banner into a notice, and this PR reads that notice too). What existing behavior does this improve? The task view shows no context-window information, and a compaction is invisible in the task chat. Subsystem affected Runner usage normalization (Rust and TypeScript transport), the PRP usage schema, a read-only issue API, the task Properties panel and the task-chat transcript. Current behavior Codex `modelContextWindow` and ACP `used`/`size` are dropped in the runner. `context.compacted` always has null sizes, Claude compactions emit no `context.compacted` event at all, and the live runner turn hides every marker except "interrupted". Proposed behavior `usage.reported` carries an optional `context {usedTokens, windowTokens}`. The task Properties panel shows a Context row ("10% of 258k") with a hover breakdown (tokens used, input and cached input, output, cost, compactions). The transcript shows a compaction divider, with sizes from the usage before and after the compaction. Reason and benefit Operators can see when a long task is close to its context limit, and they can see where the agent's earlier context was summarized. Breaking changes None. The new schema field is optional, and the new endpoint is read-only. ## What Changed - PRP `usage.schema.json`: add an optional `context {usedTokens, windowTokens}` object. Regenerate the schema bundle and the protocol manifest. - Rust `provider_events.rs`: add `codex_context_usage` (last request `totalTokens` and `modelContextWindow`) and `acpx_context_usage` (ACP `used`/`size`). ACPX `usage_update` now sets `context`. - Rust `provider_backend.rs`: Codex `thread/tokenUsage/updated` sets `context` on live (non-historical) usage. - Rust `provider_events.rs`: emit `context.compacted` for the completed `context_compaction` provider notice that #19267 produces from Claude's compaction banner. Only this path marks a Claude compaction, so the server counts each compaction once. - `runnerd-codex-transport.ts`: `rehydrateRunnerdUsageNotification` keeps a valid `context` on `tokenUsage`, so it reaches the stored `item.completed` usage item. - Server: new `GET /api/issues/:id/context-usage` (issue read access is required) and `issueContextUsage` service. It reads only the assignee's current session (the session of its newest usage report), and returns that session's latest context reading, non-zero totals, cost, and the count of compactions across all of the session's runs. Added to OpenAPI. Shared type `IssueContextUsage`. - DB: migration 0432 adds two partial indexes on `heartbeat_run_events`, built concurrently. One indexes usage items by run and time. The other indexes `context.compacted` events by company and session. `EXPLAIN` shows that both lookups use them. - UI: new `ContextUsageMeter` (bar, percentage, hover card) and `IssueContextUsageRow` in the Execution section of Properties. The row refreshes every 8 s while a run is active, and once more when the run ends. - UI transcript: `native-run-events.ts` maps `context.compacted` to a `context` activity entry with pre/post sizes from neighbouring usage items. `transcript-adapter.ts` turns it into a new `context_compacted` marker variant. The live runner turn keeps that marker as its own timeline row. - Storybook: `task-context-window.stories.tsx` (Properties panel in a task, all states, hover breakdowns, divider). ## Verification - `cargo test -p paperclip-runner-core --lib provider_events` (new tests: ACPX context, Codex context, banner compaction, notice compaction) - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport.test.ts` - `cd ui && npx vitest run src/components/ContextUsageMeter.test.tsx src/components/transcript src/components/task-chat src/components/issue-properties` - `cd server && npx vitest run src/__tests__/issue-context-usage.test.ts` (embedded Postgres) - `node scripts/typecheck-low-memory.mjs`, `pnpm check:token-gates`, `pnpm --filter @paperclipai/paperclip-runner run check:protocol-types` - Live check on a local worktree instance through the runnerd path: - A Codex `gpt-5.5` task showed "10% of 258k" (27k of 258k, input 77k with 49k cached, output 1.1k). - A Claude Sonnet 4.6 task showed "17% of 200k" (34k of 200k). - Storybook: Tasks and conversations / … / Task chat / Context window. - Not verified live: a real compaction. The divider is covered by unit tests through the same projector path the task chat uses. ## Risks - The schema field is optional, and older runners omit it. The UI renders nothing until a harness reports a window. - Migration 0432 builds two partial indexes concurrently on `heartbeat_run_events`, which is a large table. The indexes cover only usage items and compaction events, so they stay small. They add a little write overhead to those events. - Claude in-progress usage rows still record zero tokens with `requests: 1`. The final turn usage is correct. This PR does not change accounting. - A "Compact now" action is out of scope. It needs a compaction-only run that does not produce a run result. It will come in a follow-up. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, in-app browser for Storybook and the live instance). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-05 16:54:27 -06:00
DottaandPaperclip	0eaabe5c0b	refactor(accounting): remove company serialization from paid settlement (#18917 ) Settle paid operations through operation-scoped transactions. Preserve exact ledger evidence and replay while moving aggregate budget decisions to durable deferred work. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-11-04 07:29:28 -06:00
DottaandPaperclip	612d9931a6	Support per-turn Runner sessions on ephemeral web servers (#18932 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The web server controls native Runner sessions in remote sandboxes. > - An ephemeral web server must recover without its previous local filesystem. > - The existing admission rule accepts warm sessions. Managed Claude, Grok, and OpenCode sessions resolve to per-turn execution. > - Per-turn execution also needs durable provider-session bytes after the sandbox is retired. > - This pull request adds encrypted backup publication and removes the warm-only admission rule. > - Both lifecycle modes can use the existing native ownership and checkpoint contracts during a web deployment. ## Linked Issues or Issue Description Refs: #18518, #18529, #18826, #18835, #18841, #18864, #18887. What existing behavior does this improve? Native Runner execution on web servers with `PAPERCLIP_EPHEMERAL_SERVER=true`. Current behavior The admission rule requires a warm Runner lifecycle. Managed provider credentials can resolve an agent to per-turn execution, so enabling the ephemeral deployment profile blocks those turns. A database controller checkpoint does not preserve provider files after the old web home and per-turn sandbox are removed. Proposed behavior Admit native execution in either resolved lifecycle. Keep provider and credential choices unchanged. Publish encrypted provider state to shared storage before sandbox cleanup. Restore it from a fresh web home for the next turn. Use the existing controller lease and generation checks for active takeover. Reason and benefit Operators can remove the web server volume without excluding per-turn providers or forcing managed accounts into warm sessions. New native Daytona profiles automatically enter both rolling-deployment qualification lanes. Breaking changes The additive migration creates a backup publication ledger. Existing volume-backed local-disk installations retain their local backup path. S3 installations publish encrypted backups and require a stable secrets master key. Existing-volume enrollment must import surviving session data before detaching the volume. ## What Changed - Admit native Runner execution independently of its warm or per-turn lifecycle. Keep host-owned legacy execution excluded from ephemeral deployments. - Store private provider state as encrypted objects. Journal uploads before I/O, read them back, and fence publication against the current native owner. Keep the previous published backup when storage or ownership checks fail. - Restore exact provider bytes into a private cache. Require an exact durable backup before sandbox cleanup. Extend the existing bounded retention pass to retire stored objects without adding idle polling. - Import selected legacy controller and provider state in the existing offline maintenance process. Preserve queued work, task pointers, pending recovery, and original files. Prefer canonical database checkpoints. - Preserve already-failed legacy controllers with missing original artifact proof as encrypted archives. These archives do not become execution authority. Successful retained sessions still require proof. Report archival and executable imports separately. - Verify unmanaged Grok API keys through the existing xAI account validator. The live test exposed a readiness gap that kept remote Grok agents paused after platform checks. Preserve failed credentials and the separate runtime warning. - Ingest Grok whole-prompt usage at the owning ACP boundary. Bind the receipt to the exact outbound request/session; reject replay, conflicts, and incomplete authority. Separate turn cost from cumulative session cost in the sidecar schema and Rust normalization. Preserve managed billing identity and identify direct xAI API credentials. - Preserve published workspace directory names across cold allocations, including destroyed-allocation cleanup. Keep unpublished epoch/lease directories isolated and refuse to overwrite an occupied preparation. This fixes the cold-session identity regression exposed by #18922. - Increase bounded checkpoint-header inspection to 1 MiB. Retain the aggregate inspection limit. - Register all nine native Daytona profiles in per-turn and warm rolling-deployment suites. Delete the entire departing server home, exercise ordinary reads and writes, require active ownership transfer, then check a later turn on another fresh server. Permit only exact notification replay after reconnect. Ownership stays with the existing modules: Runner validates its protocol state; Core validates run scope and controller ownership; storage owns object I/O; the maintenance process owns offline conversion; the E2E wrapper owns process replacement and probes. No provider protocol is added to the shared admission rule. Grok receipt parsing stays in its provider module. The shared sidecar gains an explicit cost basis because its existing price field means session-cumulative spend, while Grok reports prompt totals. Existing consumers retain cumulative behavior when the new field is absent. ## Verification - Focused native admission, archive validation, publication fencing, cleanup, readiness, legacy import, and E2E observer tests pass. Real PostgreSQL cases verify that queued intent and historical recovery rows stay unchanged. - Full typecheck and build pass on the rebased branch. The review follow-up passes server typecheck, 29 focused PostgreSQL/archive/readiness tests, and module-boundary checks. Revision fb8d39a7a1 reached 55 successful CI checks and Greptile 5/5 with no unresolved threads. The Grok follow-up passes Runner/server typechecks, 238 ACP runtime/projection/usage tests, 16 sidecar-schema tests, the Rust cost regression, and Core billing regression. The `e9aae9cf` revision passed all 57 successful checks, with 5 skips and 2 neutral checks, and exact-head Greptile 5/5. The latest `9cbec30a4f` follow-up changes only E2E catalog/admission controls; its 291 affected tests pass, all 57 check contexts succeeded (5 skips, 2 neutral), and exact-head Greptile is 5/5 with no open review threads. - Migration numbering and safety checks pass. - A local real PostgreSQL/S3 roundtrip preserved 2,870,101,591 payload bytes across 89,100 archive entries after deleting the source directory. Restored SHA-256 matched; upload/readback took 56.5 seconds, restore 74.8 seconds, process peak RSS was 1.40 GB, and all fixture resources were removed. - Archives preserve contained relative links, reject link chains/traversal, and enforce independent byte/entry/object limits. Offline verification streams hashes. Orphaned deleted-run backups stay on the original volume. Obsolete object retention preserves the selected backup, live lease references, and pending uploads with owners. - Isolated API-key Codex deployment: original active runner/session transferred to the replacement and committed. All 567 reads, 57 writes, and 57 readbacks succeeded. A second replacement completed a same-session continuation with all 287 reads and 29 writes succeeding. The strict cell failed two agent-authored shell commands; this result is retained as failed. - Isolated API-key Claude deployment: original active runner/session transferred and committed. All 584 reads, 59 writes, and 59 readbacks succeeded. A second replacement completed a same-provider-session continuation, with 211 reads and 22 writes succeeding. The strict cell failed an initial completion call that omitted a registered attachment citation; the agent corrected it. This result is retained as failed. - Isolated API-key OpenCode deployment: the same active runner/session transferred and committed. All 481 reads, 49 writes, and 49 readbacks succeeded. A second replacement retained the provider session and completed useful work, with 156 reads and 16 writes succeeding. The strict cell failed agent tool calls: a denied external-directory write, malformed artifact hashes, and a second completion after the first result was committed. There was one submitted/completed turn and one committed result; reconnect notification replay was identical. This result is retained as failed. - Grok's real first turn now completes with settled usage and provider cost ($0.41397); the next turn is admitted normally. That attempt then exposed a shared workspace-path identity regression before deployment. Three cold-restore cases reproduced it before the fix; 106 workspace/transport tests and four focused cold-restore cases pass afterward, including destroyed allocation and occupied-directory preservation. Server typecheck and build pass. At `b5b0dbb03f` both controller switches passed the read/write probe without failure, and the active runner retained its process while the controller generation advanced. The third turn exposed an invalid reasoning-token subset check; `ad07e681ba` fixes it with the actual receipt regression. Two later live attempts failed with an upstream Grok rate limit before deployment. A tiny preflight prompt succeeded before the second attempt, but the full workload was still rate-limited. The final live gate remains incomplete. No accounting or identity guard was bypassed. Earlier failed attempts and their exact resource-cleanup receipts remain recorded. - Earlier Codex/Claude/OpenCode receipts predate #18922; they establish their tested revisions. Current-head live qualification remains pending; #18943 separately preserves pre-enrollment logical/provider workspace addresses and adds actual legacy migration proof. Its first Codex migration attempt stopped safely at skill-version verification. - Earlier attempts remain recorded: missing local provider-pack setup blocked one Claude launch, and the observer rejected identical reconnect replay in another. Setup and the observer were corrected before the latest run. - Named staging enrollment has not started. Its serving revision and post-deployment journeys remain separate delivery gates. - Broader E2E harness validation exposed deployment-catalog and installed-lane coverage drift; the affected 291 controls now pass. Twelve other failures reproduce on unchanged base `1a39dea9aa`. They concern cleanup call expectations, dated operating-overhead fixtures, a Pi profile-version expectation and workflow-security expectations. No baseline failure is reported as passing. ## Risks - Provider archives can contain credentials. Objects use authenticated encryption with scoped associated data and a wrapped data key. The original stable master key remains required. - Storage failure prevents publication and sandbox cleanup. Operators must keep shared storage available and preserve the previous volume during enrollment. - Legacy state without verified identity cannot become executable recovery authority. Archival preserves evidence and existing failures; it does not recover already-lost provider files or clear blocked tasks. - Local overlap probes establish the tested application behavior. They do not establish Railway routing behavior or live managed-subscription qualification. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, tool use, code execution, and live integration tests. The exact runtime variant and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-04 02:12:51 -06:00
Nicky Leach nickyleach Paperclip Claude Opus 5.5	ce332ecec0	fix(execution-admission): keep admitted project sets after settlement (#18871 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - #18746 added execution-admission storage: one admission row per attempt and one charge row per admitted project. > - Settlement deletes every charge row. The admission row keeps only the primary project and an opaque context revision. > - Thus, after settlement, the complete admitted project set is lost. > - A retained provider session still carries the references of its previous admission. Example: a task mentions A and B, the admission settles, and then a user removes B from the task text. The next admission must still count B, or start a fresh context. The primary project or the context token cannot supply B. > - This pull request keeps the complete admitted set on the admission row after settlement. Charge rows stay the only active capacity. > - The benefit is that later retained-session resolution can read the previous set. Settled history does not hold capacity or block project deletion. ## Linked Issues or Issue Description Refs #18746 (corrects its storage). Related: #2831, #14333. Subsystem affected Server execution admission (`server/src/modules/execution-admission/`) and the `packages/db` schema. Problem or motivation `settleAdmission` deletes all charges of an admission. No other storage records the complete project set. After settlement, the set cannot be recovered. Current task text is not a replacement, because it can change after admission. Proposed solution Add `execution_admissions.admitted_project_ids uuid[]`. It holds the sorted, distinct set. It is written once at admission and a trigger blocks changes. It has no project foreign key. `{}` is a known empty set. Null means unknown. Only settled rows can have null. Migration `0428` fills the set of unsettled `0426` rows from their charges, because those charges are still complete. Settled `0426` rows stay unknown. Alternatives considered - Keep charge rows after settlement with a `released_at` column and a partial active index. The project foreign key would then block project deletion permanently, or the key must be removed from active charges. One table would also hold two different facts. - A separate history table with one row per project. This is more rows, joins and constraints for data that is only read as a whole set by admission ID. - Encode the set in `context_revision`. That token is opaque and owned by the context owner. The database cannot validate it. - Use `heartbeat_runs.context_snapshot`. It is mutable and is per run, not per admission attempt. ## What Changed - Schema and migration `0428_retained_admitted_project_sets`: add `admitted_project_ids`, a check (null only when settled, no null elements, at most 100 entries) and an immutability trigger. The backfill fills unsettled rows from their charges and leaves settled rows null. The migration is safe to run again. Migration `0426` is not changed. - `recordAdmission` writes the set. A replay compares against the stored set. `settleAdmission` still deletes the whole charge set in one transaction and does not change the stored set. - Add `readAdmittedProjects` (company-scoped, by admission ID). It returns `known` with the set, or `unknown`. - Add a pure `retainedSessionProjects` rule: a retained session uses previous ∪ current. An unknown previous set returns `fresh_context_required`. No consumer uses it yet; C1b integrates retained sessions. - Update `doc/DATABASE.md` and `server/src/modules/README.md`. Not changed: no public cap writes, no claim or dispatch integration, no session integration, no provider activation, no `serialize` → cap 1 migration. Active counts still use only the indexed charge rows. ## Verification Red, on unchanged `master` code, with the new tests: - `server`: `npx vitest run src/modules/execution-admission/adapters/postgres.test.ts`. The new tests fail. With a temporary reader that uses the only storage `master` has (charges), the settled A+B admission reads `[]` instead of `[A, B]`. - `packages/db`: `npx vitest run src/execution-admission-migration.test.ts` fails, because no `0428` migration exists. Green, with this change: - `server`: `npx vitest run src/modules/execution-admission`: 27 passed. The new PostgreSQL test covers: A+B admission → settlement → set still readable, charges and counts zero, settlement replay keeps the set, a second attempt with a different set, primaryless and empty sets, company isolation, rollback, immutability, the check constraint, and deletion of a project that has only settled history (its ID stays in the set). It also checks that a project with an active charge still cannot be deleted. - `packages/db`: `npx vitest run src/execution-admission-migration.test.ts`: 2 passed. The upgrade test starts from the shipped `0426` schema with an unsettled A+B row, an unsettled empty row and a settled row. After the upgrade the sets are `[A, B]`, `{}` and null. A second run of `0428` changes nothing. - `pnpm --filter @paperclipai/db typecheck` and `check:migrations` passed. `node scripts/check-module-boundaries.mjs` passed. - Not run locally: the server layered typecheck. The local process was killed for memory (a 5.8 GiB limit shared with other jobs). CI runs it. This PR does not prove C2 claim races or C3 lifecycle authority. ## Risks - Migration: one `ADD COLUMN`, an `UPDATE` that only touches unsettled rows (none in production, because nothing writes admissions yet), a check and a trigger. It does not delete or rewrite data. - Settled rows created before `0428` stay unknown. A future consumer must start a fresh context for them. It must not treat them as empty or primary-only. - The stored set has no project foreign key. Company scope is checked at admission time, under the same project locks and the charge foreign keys. Size: about 70 production lines (schema 8, migration SQL 22, adapter 28, domain 15), 105 test lines and 24 doc lines. Generated metadata (`0428_snapshot.json`, `_journal.json`, removal of `0422_snapshot.json` by the standard pruning) is separate. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edits, embedded PostgreSQL tests). Default context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: nickyleach <331803+nickyleach@users.noreply.github.com> Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-11-03 15:31:10 -08:00
DottaandPaperclip	2a16dcf629	fix(workspaces): preserve shared directory trees during enrollment (#18835 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - A volume-free web server needs existing task files in durable object storage. > - Historical workspace records can share a physical folder or contain other task folders. > - A task-level migration hold cannot fence every alias, and capturing a parent recursively duplicates nested task data. > - Offline enrollment imports children first and verifies their durable coverage before omitting them from a parent archive. > - Snapshot retention preserves those child versions for as long as a covering parent depends on them. > - Existing files, task bindings, and archived states remain intact through the storage migration. ## Linked Issues or Issue Description Builds on merged #18826. What happened? The per-workspace importer could capture a shared project folder while another workspace record still owned the same path. It also recursively included runtime-created nested task workspaces in each parent import. Packaged enrollment rejected existing workspace data instead of invoking its migration owner. Expected behavior Require offline maintenance for overlapping paths. Import nested tasks before their parents, verify every excluded directory against its saved snapshot, preserve dependencies through retention, and resume interrupted imports without replacing existing remote authority. Steps to reproduce Create a project workspace and another task workspace below its `.paperclip/worktrees/` directory. Try importing either while ordinary writers are running, then run offline enrollment. Interrupt a parent import after upload and resume it. ## What Changed - Add physical-overlap admission checks and an offline entry-point guard, including global running and queued executions. - Import pending records in leaf-first pages through the existing migration owner. - Verify nested snapshots by downloading, restoring, and comparing the original source before and after parent upload; check transitive dependencies. - Publish parent dependency receipts under child snapshot row locks. Retention pins those children and revisits them when the parent is deleted. - Index imported-child dependency lookups with a partial GIN index; a PostgreSQL query-plan regression covers 2,500 unrelated snapshots. - Propagate cancellation through capture and object storage operations and preserve existing retry journals. - Wire workspace migration into packaged maintenance and document its preservation contract. ## Verification - The original overlap and duplicate-parent regressions failed before implementation. - 73 migration and retention tests pass against real PostgreSQL and files, including interrupted uploads, resumed batches, equal-path aliases, changed or missing child data, nested descendants, and active or queued executions. - Six S3-compatible storage integration tests pass, including migration through the maintenance owner and restoration of both parent and child after deleting the original filesystem. - The standalone process case was initially skipped because the worktree had no bundle. After rebuilding the server and runtime bundle, that test passed against PostgreSQL and S3: authenticated ready/export receipts, preserved decision secret, blocked application routes, and clean SIGTERM shutdown. - Server typecheck, server build, runtime bundle build, and module-boundary checks passed. Full repository CI passed on `97136a20b9` after targeted retries of infrastructure-interrupted jobs. - Review fixes resolve physical paths through symlinked ancestors and persist each parent journal’s original capture scope, including pre-change journals. All three new regressions failed before their fixes. An initial abort/retry test exposed JSON object-key ordering in the saved scope; deep equality fixes that case, and the full migration suite passed. - Three new fixtures initially omitted required workspace fields; one also omitted its task binding. The fixtures now satisfy the existing contract; production validation was not relaxed. - The parent PR's full local suite stopped on a chat retry-notice timeout and a following fake-timer failure. All four relevant cases passed separately without source changes; this is not a claim that the full local suite passed. - No staging enrollment or live rolling-deploy result is claimed by this PR. ## Risks The offline flag is an internal maintenance contract: Cloud must actually stop every predecessor deployment before starting the process. Deep or large trees require additional object downloads and source comparisons and may exceed one maintenance window; import journals support retry. Dependency lookups are company-scoped and event-driven, with no added idle polling. Unavailable archived sources and unresolved recovery/copyback still block migration and require separate owner work. Unsupported local providers and cleanup_failed workspaces deliberately remain enrollment blockers: filtering them from both the batch and eligibility would abandon local files when the volume is detached. Two regression tests prove that rejected records keep their files and do not acquire remote authority. Original folders and the original volume remain retained. The additional review request to ignore parallel-write policy, stale task ownership, or a missing task binding in offline mode is intentionally not applied: stopping deployments does not establish those semantics. #18841 documents the separate owner actions and adds three offline regressions preserving their files and blocking detach. The batch reports the first failed workspace and supports journaled retry; it does not promise aggregate diagnostics. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. This session does not expose a more specific serving model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used with available version and capability details - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR using the bug template - [x] I have not referenced internal or instance-local issues or links - [x] My branch name describes the change and contains no internal task ID - [x] I have run the focused tests locally and they pass - [x] I have added tests for the changed behavior - [x] I have updated relevant documentation - [x] I have considered and documented risks - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address reviewer findings before merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-03 14:50:14 -06:00
Nicky Leach nickyleach Claude Opus 5.5 Paperclip	fef86e32e9	feat(execution-admission): add project concurrency policy and admission storage (#18746 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Projects group tasks. Agents run tasks as heartbeat runs. > - Today, workspace mode and shared-workspace flags decide whether tasks run at the same time. A project cannot set its own limit on concurrent task executions. > - A correct project limit must count every project that a task uses, including @-mentioned projects. It must also keep the count when a project is archived or deleted, and when a run is admitted more than one time. > - This change cannot go into one pull request with claims and settlement. Thus this pull request adds only the policy semantics and the durable accounting storage that later claims will use. > - This pull request adds a new `execution-admission` module, three tables and the deletion guards. No route writes a cap and no claim path enforces it. > - The benefit is a tested storage contract (constraints, idempotency, rollback, indexed counts, lifecycle preservation) before any behavior changes. ## Linked Issues or Issue Description Refs #2831, Refs #14333 (related agent-level and adapter-level limits; not duplicates). Subsystem affected Server execution admission (new module `server/src/modules/execution-admission/`) and the `packages/db` schema. Problem or motivation A project cannot limit how many of its task executions are active. The current shared-workspace flags mix resource safety with capacity. A future project limit needs storage that records each admission attempt and every project that the attempt charges. Run IDs cannot be the identity, because a run can be released before dispatch and admitted again. Proposed solution Add a separate policy table that keeps "never configured" apart from "explicit no limit". Add admission epochs with one charge row per distinct project. Settlement deletes the charge set in one transaction. Later pull requests integrate claims, settlement, waits and the public control. Alternatives considered Columns on `projects` would leak an unenforced cap through every project reader. A project column or a `uuid[]` on `heartbeat_runs` cannot enforce per-project uniqueness or company scope. `budget_reservations` has no project set. A counter would be a second source of truth. ## What Changed - Added `project_task_execution_policies`. No row means never configured. A null maximum means an explicit "no limit". A check accepts only positive maximums. A composite foreign key keeps the project and company together. The row is deleted with its project. - Added `execution_admissions`. Each row is one admission attempt of a run: `(run_id, attempt)` is unique, and a partial unique index allows one unsettled attempt per run. It keeps the context revision, the nullable primary project (provenance, no foreign key) and the settlement identity. A check sets `settlement_id` and `settled_at` together. - Added `execution_admission_project_charges`. It has one row per distinct admitted project, unlimited projects included. Composite foreign keys keep the admission and the project in one company. The project foreign key has no cascade, so a charge cannot disappear with its project. `(company_id, project_id)` is indexed for active counts. - Added migration `0426_absent_guardian.sql` (renumbered from `0423`, then `0425`, as master added `0423`–`0425`). The generated SQL was reordered so the unique indexes exist before the composite foreign keys that need them. Snapshots `0419` and `0420` were pruned to keep five snapshots. - Added the `execution-admission` module (domain → application → adapters): - Domain: policy patch parsing and application (omitted keeps, null clears, partial updates keep other fields, malformed values are rejected), canonical project-set preparation (primary ∪ references, deduplicated, ascending, bounded with an explicit `too_many_projects` result), and the settlement replay decision. - Application: internal `readTaskExecutionPolicy` and `updateTaskExecutionPolicy` commands. No route, tool, CLI or import calls them. - Adapter: the project-set lock (`FOR NO KEY UPDATE`, ascending, one statement), the policy store, and the storage transitions `recordAdmission`, `settleAdmission` and `countActiveProjectCharges`. These transitions are not exported from the module entry point. Claims (later) must add the capacity check and the lifecycle evidence. - Project deletion returns `409 project_execution_admission_pending` while the project has a charge. Agent deletion returns `409 agent_execution_admission_pending` while its runs have an unsettled admission, and removes settled history. Company deletion calls a new module participant before it deletes runs and projects. - Documented the tables, the lifecycle rules and the proposed global lock order in `doc/DATABASE.md`. Added module ownership to `server/src/modules/README.md`. ## Verification - `cd server && npx vitest run src/modules/execution-admission` → 2 files, 26 tests pass (the Greptile finding on an empty primary ID added an assertion to an existing test). The adapter tests use embedded PostgreSQL and cover: - policy semantics, the maximum check and the company foreign key; - charges for every distinct project, a primaryless set and an empty set (no rows); - replay of one admission ID, conflict on a changed record, refusal of a second live attempt and the partial unique index; - settlement of the whole set once, replay, a different settlement, then attempt 2 for the same run; - company isolation of projects, runs and admission IDs, the duplicate-charge key, and rollback of an aborted transaction; - active counts per project, and an `EXPLAIN` that uses `execution_admission_project_charges_project_idx`; - archive keeps charges, `projectService.remove` returns 409, a direct project delete fails on the foreign key, and delete succeeds after settlement; - `deleteAgentDependencies` returns 409 while unsettled, and `deleteCompany` removes only that company's admissions. - `cd packages/db && npx vitest run src/execution-admission-migration.test.ts` → pass. It removes the new tables and receipt, seeds a legacy project and run, applies pending migrations, and compares the existing rows. - `pnpm --filter @paperclipai/db check:migrations` → pass. Five snapshots remain (`0421`, `0422`, `0424`, `0425`, `0426`; `0423` is SQL-only on master). - `node scripts/check-module-boundaries.mjs` → pass. - `packages/db` `tsc --noEmit` → pass. A scoped `tsc` of the module entry points and domain tests → pass. - Existing tests for the changed deletion services → 6 files, 161 tests pass (`resource-lifecycle-events`, `prompt-injection-prevention`, `agent-lifecycle/lifecycle`, `case-deletion`, `project-workspace-root-provenance`, `companies-service`). - Not run locally: the full `server` typecheck. `tsc` and `tsgo` were stopped by the out-of-memory killer on the 7 GB machine (exit 137, also single-threaded). The full `pnpm -r typecheck`, `pnpm test:run` and `pnpm build` were not run locally; CI ran them on head `520b69d553`: all gates pass, including Typecheck, Build and the 12 server test shards. After merging master (`1c9ca5829f`) into head `c088729361`, the migration check, migration upgrade test, module tests, module-boundary check and `packages/db` typecheck were rerun locally and pass; CI is rerunning the full suite. ## Risks - Migration risk is low. It creates three empty tables and indexes. It does not change existing tables or rows. - Behavior changes only when admission rows exist. Nothing writes them yet, so project, agent and company deletion behave as before. - Later claim work must take the project-set lock in the documented order. A claim that takes project locks after issue locks could deadlock with project deletion. - Settlement deletes charge rows, so a settled admission keeps its primary project and context revision but not its full project set. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`) in Claude Code, with tool use (shell, file edits, embedded PostgreSQL tests). Default context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: nickyleach <331803+nickyleach@users.noreply.github.com> Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-03 11:35:28 -08:00
DottaandPaperclip	ccc63ea458	fix(server): prove completed history before idle sleep (#18646 ) Reviewed and verified at `592bce69c6`. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-11-03 12:37:25 -06:00
DottaandPaperclip	5f1b59ba2c	fix(db): preserve binary data in checkpoint backups (#18650 ) Reviewed and verified at `69792ccbcf`. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-11-03 10:47:19 -06:00
DottaandPaperclip	b8f8b904fa	feat(routines): preserve automation ancestry through webhooks (#18772 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Routines let external services start agent tasks through a normal webhook. > - A repair routine must recognize failures from work that it created. > - The receiver added in #18714 put Sentry payload parsing and repair policy in core routine intake. > - This pull request replaces that receiver with verified creation provenance on normal routine calls. > - Sentry can filter the resulting tags before it sends a normal routine webhook. > - The benefit is reusable provenance and loop prevention without a provider-specific route. ## Linked Issues or Issue Description Problem or motivation A Sentry repair alert can start another repair when its own work fails. The dedicated receiver in #18714 solved this through a Sentry-specific payload contract. Ordinary routine webhooks also need a trusted way to retain the automation that created their tasks. Proposed solution Use the existing public `/fire` route and its current authentication. An optional source run credential proves a live Paperclip caller. Store the caller separately from webhook JSON. Follow recorded task creation links and export bounded ancestry tags on run-failure events. Let Sentry alert filters exclude repair-origin work. Alternatives considered Keep the dedicated Sentry receiver, accept sender-supplied origin IDs, or filter only the immediate routine. The first couples core intake to one provider. The second accepts unverified claims. The third misses child tasks, standalone follow-ups, and calls through another routine. Roadmap alignment This improves the shipped Scheduled Routines and Activity log capabilities. It does not add a new scheduler or incident system. Related work: #18714 is the implementation replaced here; #9727 adds source-task navigation and UI attribution; #10206 proposes exception-led routine dispatch. This PR uses existing task creation records and does not implement either of those broader proposals. ## What Changed - Remove the Sentry-only route, parser, authentication exception, and payload-specific tests and documentation from #18714. - Add optional `X-Paperclip-Source-Run-Token` support to normal routine webhooks. Validate the standard run JWT, company, instance, agent, live run, and cancellation state. Authenticated routine API calls also retain their validated caller. - Add nullable `routine_runs.created_by_run_id`. Keep the reference after source-run deletion so missing history becomes unknown. Separate callers during coalescing, including legacy open tasks. - Follow company-scoped routine receipts, creator runs, task parents, and legacy creation activity. Mark missing, foreign, cyclic, private, or excessive ancestry for safe alert filtering. - Add event-local `automation_origin_status`, `automation_routine_ids`, and `task_shareable` tags through the existing Sentry SDK hook. Cap ancestry at 32 reads and share a 750 ms deadline across metadata and ancestry lookup. Keep the SDK one-second wait and eight-lookup concurrency bound. Redact the source credential from HTTP logs and Sentry request headers. - Preserve unexpected database failures as server errors without rejection bookkeeping in an aborted transaction. Document 409, 415, and 422 responses for the normal webhook. - Keep `routineScopedRunId` as generic opt-in `X-Paperclip-Idempotency-Scope: routine` support. Default trigger receipts and timestamped HMAC replay protection retain their current scope. - Add [the Sentry repair tutorial](https://github.com/paperclipai/paperclip/blob/codex/routine-creation-provenance/docs/guides/board-operator/sentry-run-failure-repairs.md), API documentation, OpenAPI headers, and capability-map updates. ## Verification At commit `0f4a0051528edd1367a921a76a8050c3fd087872`: - `pnpm -r typecheck` and `pnpm build` passed for the full workspace. Migration numbering and safety checks passed. - The focused service, route, Sentry, redaction, and OpenAPI suites passed 228 tests in five files. The database Sentry resolver and OpenAPI invocation passed 33 tests in two files. These are separate invocations with some overlap. - The full routine HTTP suite passed all 15 tests. The authenticated API case failed before the caller-wiring fix and passed after it. The fixture loads the real route-owned services. No test deadline was raised. - The real `@sentry/node@10.71.0` suite passed all 12 tests. It uses an in-memory transport and sends no events to Sentry. It covers terminal failures, saved-message interruptions, event isolation, and source-token redaction. - Regression tests also cover forged, expired, foreign, and cancelled caller credentials; payload spoofing; inherited routine ancestry; legacy coalescing; deleted history; private work; cycles; query and time limits; database error causes; and routine-wide receipts. The new error and budget cases failed before their fixes. - `node scripts/check-maps.mjs` and `git diff --check` passed. The map check covers 35 areas and 192 capabilities. - The full local Vitest command was stopped for a required master merge after four chat shards passed 1,278 tests. No full local pass is claimed. An earlier combined HTTP run hit an existing malformed-ID timeout whose original cause is not established; the final full HTTP suite passes. An extra local run of the unchanged heartbeat scheduling file passed 12 of 13 tests and failed a readiness-status assertion. Its logs also reported a missing fixture user membership. The same 13-test file now passes in current-head CI. - All GitHub Actions checks pass on this commit. Three jobs initially lost their self-hosted runners. One server shard initially failed while deleting a company in an unchanged heartbeat test because of a `company_skills` foreign key. One retry passed all affected jobs without code changes. That server shard passed all 499 tests, and all eight browser shards passed. - Fresh Greptile review is 5/5 on this commit. All six review threads are resolved. The separate Paperclip Review check remains queued. Its bot reports that work is paused. A maintainer must resume the assigned review work to complete that check. No full green check state is claimed while this external gate is pending. - Live Sentry configuration and deployment are outside this PR's acceptance evidence. The tutorial describes setup, a controlled failure, and a repair-origin exclusion check for operators to run after deployment. ## Risks - Normal app webhooks retain the sender's full JSON in company-readable routine history and the execution task. Alert filters and task visibility are not content scrubbers. Operators must scrub sensitive event data in Sentry before forwarding it and keep connection tests in setup mode. - Existing users of `/sentry-run-failures` must move to `/fire` and add the documented Sentry filters before enabling repair intake. The old route is removed. Stored tasks and receipts remain. - The additive migration uses `ADD COLUMN IF NOT EXISTS`. It does not rewrite historical tasks or infer missing provenance. - Unknown or unshareable ancestry is excluded by the tutorial's alert rule. Missing history, an enrichment timeout, or more than five routine IDs can therefore suppress a repair webhook while retaining the Sentry error. - An external webhook without a verified source credential starts a new receiving-routine origin. Its JSON cannot establish upstream Paperclip ancestry. Sentry must not store a Paperclip run credential. - Routine-wide receipt reuse needs a stable sender key. A static Sentry custom header is not a per-event key. The tutorial keeps delivery deduplication separate from loop prevention. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex, GPT-6 model family, with reasoning, repository access, code editing, and test execution. The session does not expose the exact model variant or context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-03 09:33:17 -06:00
DottaandPaperclip	86b365f992	feat(auth): add independent agent configuration read permission (#18766 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents need to inspect configuration and instructions when they set up teammates. > - Configuration reads currently depend on configure or suggestion grants. > - Legacy standard agents did not receive those newer grants. Some self-read routes also lose the target agent identity. > - This pull request adds an independent read grant and applies only that grant to eligible existing agents. > - The benefit is that agents can inspect and verify configuration without new write authority. ## Linked Issues or Issue Description Refs #15283. Related earlier proposals: #8064 and #12050. Those proposals target older authorization code; this change uses the current configure/suggest model and adds a read-only rollout for existing agents. Related bounded peer metadata proposal: #14160. What existing behavior does this improve? Agent configuration, configured skill, instruction, and revision reads through the existing APIs and native instruction tools. Current behavior An agent needs `agents:configure` or `agents:suggest-changes` to inspect a peer. Older standard agents can hire a teammate but cannot verify the saved instructions. Configuration and revision routes also reject self-reads because they authorize a company resource instead of the target agent. Proposed behavior Add `agents:read` for redacted configuration and instruction reads. Keep `agents:configure` as read/write and preserve suggestion-grant compatibility. Standard new agents receive the read grant. A one-time migration grants only reads to eligible existing standard agents. Individual routes authorize the target agent and grant scope. Reason and benefit Read access can be granted without configuration changes, rollback, or environment probes. Legacy agents can verify teammates without receiving new write permissions. ## What Changed - Add `agents:read` to the shared permission contract and standard-agent defaults. - Accept read, configure, or suggestion grants for configuration reads, with target scope and the responsible-user ceiling. - Fix target-aware self and scoped configuration, skill, and revision reads. - Add an audited data migration. Skip low-trust, built-in, inactive, pending, terminated, setup, and scoped configuration/suggestion cases. Preserve existing read scopes and later revocation. - Update the specifications, default-permission documentation, and agent access map. ## Verification - Focused acceptance: 276 tests passed across seven suites on commit `a37314df88`: authorization, real-key HTTP access, route authorization, canonical instructions, default grants, migration replay, and lifecycle configuration. - The HTTP journey uses a real hashed agent API key and a disposable PostgreSQL database. It verifies redaction, scoped reads, denied edits and rollback, cross-company isolation, and both agent and responsible-user revocation. - New read-grant regressions failed before the authorization change. A realistic paused/pausing/resuming migration fixture also failed before the lifecycle filter correction and passed afterward. Setup-held paused agents stay excluded. - `pnpm -r typecheck` and `pnpm build` passed on the rebased branch; the final lifecycle migration correction also passed the database package typecheck and build. The latest commit changes only a test assertion. - `pnpm --filter @paperclipai/db check:migrations`, `node scripts/check-maps.mjs`, and `git diff --check` passed. - Full current-head [CI run](https://github.com/paperclipai/paperclip/actions/runs/41641531426) passed: typecheck, build, all general and serialized test lanes, Runner checks, all eight browser shards, canary dry run, policy, and aggregate gates. The local full-suite attempt was stopped after exposing the outdated cross-company 403 assertion; interrupted local full-suite attempts are not counted as passes. ## Risks The migration deliberately expands redacted configuration and instruction visibility for eligible existing standard agents in the same company. An absent older write grant does not deny the new read capability. It adds no write grant. Scoped configure/suggestion grants and all existing read-grant scopes stay intact. Administrators can remove the independent read grant after the one-time rollout; ordinary updates and startup do not restore it. Configure and suggestion grants still imply reads within their own scopes. Cross-company configuration/history reads now return 404 through the common target-aware helper. No schema change or credential-value disclosure is added. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. The host does not expose a more specific runtime model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-03 07:26:27 -06:00
DottaandPaperclip	dd02595390	fix(db): retain hosted census construction callers (#18725 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Operators use a bounded database census to find expensive read paths. > - The hosted server combines application code and capture wrappers in generated files. > - Generic HTTP owners suppressed caller capture. Generated paths also failed the caller allowlist. > - This PR retains trusted query construction locations without source maps. > - Operators can distinguish application query sites while exact owners, privacy limits and capture bounds stay intact. ## Linked Issues or Issue Description Refs #17522, #17564. What happened? A real map-free bundle with two application query sites produces one callerless census group. This affects unowned queries and queries under the generic `http.request` owner. Expected behavior The census should distinguish trusted query construction sites. It must keep unknown calls unknown and preserve specific semantic owners without stack capture. Steps to reproduce Run the committed bundle test and pinned comparison helper. The helper bundles the actual capture module and real Drizzle, with a fake postgres-js client. It does not assign a fake path to an isolated mock caller. Paperclip version or commit Control: `09162fe893b464dd2ccdafd14bd3ef1611202a86`. The branch is rebased onto `1e3ab690b072bbf6a1c1f1d0454ea49315b2074c`; neither intervening commit changes this owner. ## What Changed - Keep the exact generic HTTP owner and add bounded caller capture only during the active census window. - Exclude capture wrapper frames with a local V8 stack boundary. Keep one static generated construction anchor for trusted root builders. - Keep unscoped bundled driver and relational paths unknown. Their first frame can belong to the ORM. - Cover exact application lines, alternate parameters, prepared builders, transactions, nested savepoints, privacy and inactive windows in a real bundled scaffold. - Add a portable pinned comparison helper and retained measurements. Existing group, page, byte, expiry and output-rate caps remain in force. ## Verification - PASS: 54 focused unit, real-bundle, existing runtime bundler and real-PostgreSQL tests. - PASS: database TypeScript check. - PASS at final head `b270b92821`: full local `pnpm -r typecheck` and `pnpm build`. - The first local `pnpm test:run` was stopped after two chat partitions passed (668 cases), because source changed during the run. This is partial evidence only. The fresh final-head full local command passed all six chat partitions (1,829 cases). Its general phase reported one failure in the unchanged workspace port-conflict test. The exact case then passed alone (1 pass, 178 skipped), and the unchanged full file passed 179/179. The original failure did not reproduce; its cause is unknown. The general phase was stopped after its remaining serial queue was measured at roughly three hours. Cancellation did not print the original assertion diff. The full command is failed/incomplete, not passed. Remaining general files, workspace-project phases and 164 serialized files were not reached. Fresh final-head CI passes all partitions. - Final-head code CI passes. Greptile is 5/5 with its thread resolved. Paperclip Review is delayed by an external review workspace recovery failure; it has not completed on this head. - Five serial alternating rounds per mode, 1,000 queries per sample, 40 retained samples, Node v24.22.2. Generic and unowned attribution rises from 0/1,000 to 1,000/1,000 across two exact application anchors. Specific owners stay stack-free. - HTTP median wall cost is 10.528 → 15.169 µs/query; process CPU is 15.461 → 17.662 µs/query, with noisy overlapping ranges. This is census overhead, not a product speedup. - Review failure retained: the existing runtime bundler test first failed because the public parser accepted arbitrary generated frames. The fix restores default rejection and permits generated frames only from the trusted builder boundary. The unchanged existing test now passes. - Full ranges, raw samples, proof boundaries and reproduction commands: https://github.com/paperclipai/paperclip/blob/b270b92821ae47c456a1b61d78c1593c5348ede7/doc/performance/2026-11-03-db-capture-hosted-callers.md ## Risks - Active generic HTTP census now captures stacks. More groups can reach the existing 2,048-group cap sooner. - Anchors identify construction sites in one exact generated build. They do not identify later async consumers, TypeScript lines or CPU owners. - Unscoped driver calls can remain unknown. This is intentional. - The no-network local fixture excludes deployed Sentry/OTel stack formatting and traffic effects. It does not establish exact hosted overhead. - Wrappers remain installed after expiry. Disabled, future and expired windows do not capture stacks. No schema, authorization, provider, or query behavior changes. ## Model Used OpenAI GPT-6.1 Sol (`gpt-6.1-sol`) with reasoning, code execution and repository tools. The host does not expose the context-window size. Independent review used the same model family. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-03 06:04:42 -06:00
sentry[bot]	18abf7c905	fix(db): tolerate unparseable connection URLs during teardown (#18684 ) closeRegisteredClients now uses hostPortKeyOrNull and returns early for URLs that new URL() rejects, matching createDb, which never registers clients under such URLs. Fixes PAPERCLIP-BACKEND-5C Fixes #18685	2026-11-02 15:33:36 -08:00
DottaandPaperclip	33fc7fcddc	fix(db): clean up owned PostgreSQL test servers (#18627 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Database, server, and CLI tests use real PostgreSQL fixtures. > - Each fixture must own its server until PostgreSQL has stopped. > - The old teardown returned after five seconds even when its server remained alive. > - A startup failure could then mark the host unsupported and skip database coverage. > - This pull request waits for owned shutdown and makes supported-host startup failures fail collection. > - A shared-server command reduces process creation while keeping each fixture's database isolated. ## Linked Issues or Issue Description Refs: #7756 for related development-process ownership. That development-server issue remains outside this test-fixture fix. Related PR: #16799 collects macOS startup diagnostics. This PR changes test shutdown and failure behavior. What happened? Repeated test runs can exhaust macOS PostgreSQL semaphore resources. The fixture abandoned slow shutdown and swallowed stop errors. The support probe converted ordinary startup failures into skipped integration coverage. Expected behavior Tests must stop their PostgreSQL servers, retain files if stop fails, and report resource exhaustion as a failure. Fixtures on a shared server must not close another database's clients. Steps to reproduce Start a fixture whose PostgreSQL stop exceeds five seconds, or make a supported-host startup fail with semaphore exhaustion. The former helper returned from teardown or reported unsupported coverage. The new regression tests exercise both paths without exhausting host resources. Paperclip version or commit Source checkout based on current master. Deployment mode Local source development and CI tests. ## What Changed - Add explicit ownership for test PostgreSQL children. Wait for fast shutdown, then request immediate PostgreSQL shutdown if needed. Keep cleanup idempotent and fail when exit cannot be confirmed. - Publish reusable templates only after clean shutdown. Do not publish a crashed or immediately stopped cluster. - Stop owned children on POSIX worker signals and process exit. Preserve test directories when shutdown fails. Remove conflicting dependency exit hooks. - Retry port collisions only. Fail collection for resource exhaustion, unavailable configured servers, and other startup failures on supported platforms. Preserve skips for explicitly unsupported platforms. - Move administrative-server support into the common fixture used by database, server, and CLI tests. Close clients at database scope and migrate cloned templates before use. - Add a directly invoked shared-server runner to own one test server and run suites against separate disposable databases. Preserve child exit status and support an existing disposable server. - Unify cancellation: stop and wait for the test process group before PostgreSQL teardown. Add nested-process coverage, real worker-exit coverage, shutdown regressions, shared-database isolation checks, and setup documentation. Replace ignored heartbeat completion polls with the existing execution drain before asserting persisted outcomes. - Finish owned cluster-directory cleanup after signal-driven cancellation. Preserve prepared templates across shared-fixture tests. Remove stopped directories asynchronously, using native removal on POSIX with a Node fallback. - Align database and CLI fixture hook budgets with the existing 30-second server budget. This lets the ten-second shutdown protocol finish and report errors. The idle-sleep suite uses the existing 90-second fixture budget for its unusually large final directory cleanup. ## Verification - The semaphore-exhaustion regression failed against the old helper because it resolved to `supported: false` instead of rejecting. - All 37 focused tests pass on the final runtime code (`e4de00ab40`). They include real worker exit, SIGTERM, nested-process SIGINT/SIGTERM cancellation with PostgreSQL available during child cleanup, failed template shutdown, unsupported platforms, stale SQL templates, and directory removal. A child exiting with status 7 makes the shared-server runner return status 7 after cleanup. - Full local `pnpm -r typecheck` and `pnpm build` pass on the final runtime code (`e4de00ab40`). Subsequent changes only adjust server-test lifecycle waits, the idle-sleep cleanup budget, and documentation; the server typecheck also passes with those final tests. - A fresh shared-server run on `90b65fd8ad` passed all 68 database files and 297 tests. Earlier preparation runs had two ten-second teardown timeouts and a stale-template failure; the final helper migrates cloned templates and permits the full shutdown budget. These earlier failures remain accounted for here. - The local full repository attempt stopped on a Discord receiver-lease test after 338 passing chat tests. That exact case passed in isolation. This full-suite attempt is not a pass. - On `90b65fd8ad`, [server shard 6](https://github.com/paperclipai/paperclip/actions/runs/41496495253/job/125452949369) and its one unchanged retry reported two 15-second cached-input heartbeat timeouts and a 30-second idle-sleep teardown timeout. All ten cached-input cases then passed locally with their original deadlines. A local parallel run of the full files reported eight behavioral/hook failures and two suite teardown timeouts (281 tests passed). - Serial idle-sleep runs passed all 225 test assertions but overran the 30-second final hook. Tracing measured client closure in 4 ms, PostgreSQL exit after 5 seconds, and synchronous directory removal taking another 35 seconds. Asynchronous Node removal and native removal also exceeded that hook under the full workload. Cleanup now remains asynchronous and awaited, and only this heavy suite's final hook uses the existing 90-second fixture budget. No PostgreSQL shutdown deadline or test assertion was weakened. The serial run then passed the complete idle-sleep file, including all 225 tests and teardown. Its heartbeat file passed 63/64 cases, exposing an ignored three-second completion poll. After replacing that poll with an execution drain, another timer case exposed the same pattern (63/64 passed). All remaining ignored completion polls now await execution drain without changing test deadlines. The complete heartbeat file then passed all 64 tests. The intentional asserted lock-contention poll is unchanged. The final server typecheck passes, and a process audit found no PostgreSQL server left by the completed local runs. - On final head `2cf316d3f571e4516890cba743ecffeb9703cce3`, the previously failing server shard 6, database lane, full typecheck, and build passed. The [first CI attempt](https://github.com/paperclipai/paperclip/actions/runs/41506358136) then lost self-hosted runners in the canary and serialized-server lanes, with additional jobs cancelled. The server-2 lane had one 30-second timeout in the unchanged workspace-recovery HTTP Retry test (2,282 other tests passed). That exact test passed locally with its original deadline (28.78 seconds including imports). One unchanged retry of only failed and cancelled jobs completed successfully on the exact final commit (workflow attempt 2). The workspace-recovery timeout case and every interrupted lane passed; successful first-attempt jobs were retained. The additional Paperclip Review check remains queued, waiting for its assigned agent; it has no unresolved GitHub review threads. Greptile completed review on this exact final head at 5/5, with zero unresolved review threads. All four original review findings and their threads are resolved; additional Windows shutdown, cancellation-directory, and template-reuse findings are fixed. - `pnpm check:module-boundaries` and `git diff --check` passed. Post-run process checks found no PostgreSQL servers left by the completed verification runs. ## Risks - Immediate PostgreSQL shutdown can require crash recovery. This fallback applies to disposable test clusters and runs only after fast shutdown times out. - No process can handle `SIGKILL` or machine power loss. Host resource cleanup remains a separate backstop. - Directory cleanup on cancellation applies to the shared-server runner's own cluster. Directly terminated test workers stop their PostgreSQL process but retain disposable files for inspection. The process-exit guard cannot await file removal. - The two-second `pg_ctl -W` deadline bounds signal dispatch. It is separate from the five-second and thirty-second server-exit waits. A control-command failure fails cleanup and retains its directory; it does not report successful cleanup or force-delete live files. - Shared fixtures require a disposable PostgreSQL server and a role that can create databases. The directly invoked shared command is opt-in; the existing `pnpm test` command remains available. - These changes do not stop unrelated development servers or delete host-wide IPC resources. Clean shutdown uses the owned `pg_ctl` binary on every supported platform. Its real control path was tested on macOS. A Windows host was not available for live verification; POSIX signal tests skip on Windows. ## Model Used - OpenAI Codex, based on GPT-6. The runtime does not expose the exact serving variant or context-window size. The agent used reasoning, shell execution, code editing, and GitHub tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-02 14:24:48 -06:00
DottaandPaperclip	a92f616cd0	fix(db): attribute bounded captures to execution owners (#18634 ) ## Thinking Path > - Paperclip manages agent work through shared server and database services. > - High query volume can spend main-thread time on SQL construction and result decoding. > - The existing bounded response capture counts rows and bytes, but it cannot name the operation that executed a query. > - Bundled callers can be missing, and measuring every parsed JSON value adds work to the diagnostic. > - This pull request carries a semantic execution owner into each measured query and bounds response sizing. > - Operators can rank query volume by owner before choosing a performance fix. ## Linked Issues or Issue Description Refs #17504, #17522, #17537, #17564. What existing behavior does this improve? The opt-in `PAPERCLIP_DB_RESPONSE_CAPTURE_WINDOW` diagnostic. Subsystem affected Database diagnostics and existing server execution boundaries. Current behavior The capture groups by table, operation, and builder caller. It cannot distinguish execution owners that reuse a prepared query. Bundled deployments need source maps for caller locations. The capture visits every returned value and serializes parsed JSON again to estimate its size. Proposed behavior Version 2 captures use fixed semantic owners for HTTP requests, delivery queues, execution phases, and budget work. They count completed calls, returned rows, errors, and completion wall time. They sample successful results 1, 17, 33, and so on, with fixed cell and string/byte limits. Complex values remain explicitly unmeasured. Semantic ownership works without source maps. Reason and benefit A short census can identify which operations issue the most queries or return the most rows. It preserves each query's execution owner through pooled connections, concurrent operations, and prepared-query reuse. It reduces diagnostic work without claiming per-query CPU attribution. Breaking changes Opt-in capture output moves from `entry.v1`/`summary.v1` to `entry.v2`/`summary.v2`. Sampled primitive byte lower bounds replace all-result byte estimates. Consumers must use the new fields and must not extrapolate them into a total. There is no database migration or application API change. ## What Changed - Added `withDatabaseOperation(owner, action)` to the DB package. The server owns semantic labels. Queries retain execution ownership in their completion closure. - Added fixed owners at existing HTTP, delivery, budget, and execution timing boundaries. Delivery work replaces the context of the producer that woke it. - Added complete call/row/error counters and completion wall durations within the existing bounded window. Durations include waits and are not CPU measurements. - Sampled and bounded primitive-value sizing. Complex and oversized values remain unmeasured. Known owners skip repeated stack extraction. - Preserved the deadline, group limit, paced output, query outcomes, and existing coverage exclusions. Updated the operator documentation. - Added real PostgreSQL owner-isolation and prepared-query tests, server scope tests, and plain bundled-runtime proof. - Moved projection-test and benchmark full-response sizing into an explicit test helper. Existing payload-size thresholds remain unchanged; these synthetic checks do not use the production sampler. ## Verification - Final-commit DB capture suites: 43 tests passed in 13.86 seconds against the actual PostgreSQL driver, including concurrent owners, prepared reuse, transaction failure, a dedicated client, sampling, and a query crossing the deadline. DB typecheck passed. - Server attribution and existing delivery/execution/budget suites: 53 tests passed. Final concurrent HTTP GET/JSON POST scope refinement: 5 tests passed. - Runtime bundle suite: 8 existing tests passed. The new no-source-map owner test passed after its fixture was corrected to use a driver thenable. An ordinary native Promise can bypass an overridden `.then`; the real PostgreSQL tests separately cover driver integration. - Observer-only experiment: three alternating pairs per case on Node 24.22.2, macOS arm64, 3,000 calls per run after warm-up. For an already-materialized synthetic JSON result, median capture CPU fell from 82.37 to 1.87 microseconds/call. For a 100-row primitive result, it fell from 8.10 to 4.40 microseconds/call. Every result retained identity and all calls were counted. The new diagnostic intentionally measures less byte data; these are observer costs, not database latency or a hosted application speedup. Disabled-case timings were below one microsecond/call and too small for a performance conclusion. - Final lifecycle regression: 28 unit tests and DB typecheck passed. Closing the last capture disables and replaces owner storage; overlapping captures retain it. - Final-commit full recursive typecheck passed in 38.38 seconds and full build passed in 40.81 seconds. The build stamp matches `83ed4ba9cebd68d48929c46f15ab32d5c0b9687b`. Focused server attribution tests also passed 5/5 before the test-helper-only migration. Full test acceptance will use the repository's parallel CI gates; the unsharded local command takes hours. - Verification failures retained: initial sandbox runs could not open local IPC/PostgreSQL listeners; permitted reruns exercised the real services. One old test expected JSON serialization and was updated to assert explicit unmeasured complex values. The first bundle fixture used the wrong promise boundary, as described above. A retained-callback regression also demonstrated that disabling and reusing the same AsyncLocalStorage instance could resurrect an old owner; replacing the instance after the last capture closes fixes that case. - The first CI run found older projection tests consuming the previous full-response fields. Those consumers now use the full-response test helper, preserving their byte thresholds. The two complete affected route suites plus helper tests passed 115/115 in 73.08 seconds. A temporary full-row query negative control then failed the unchanged 2,048-byte limit at 5,000,812 bytes and was restored; five other service suites passed 34/34 and the affected chat cases passed 3/3. All three previously failing CI shards passed on the corrected head. A local skill-list benchmark smoke check completed 255 captured queries with no in-flight queries or overflow; this was integration verification under concurrent test load, not a timing benchmark. - Two final-head runner jobs lost communication with GitHub before reporting a test result. One targeted retry of those jobs and their dependent aggregate passed. All 53 final-head checks passed, with 3 intentional skips; previously passing suites were preserved. - Hosted capture remains pending until the reviewed revision is deployed and a bounded window is explicitly configured. Reproduce the focused checks with Node 24 and the repository pnpm version: ```sh pnpm exec vitest run packages/db/src/response-capture.test.ts packages/db/src/response-capture-postgres.test.ts pnpm --dir server exec vitest run --config vitest.config.ts src/__tests__/database-operation-attribution.test.ts scripts/bundle-runtime.test.mjs pnpm -r typecheck pnpm build ``` ## Risks - Owner context is active while a valid future capture window is armed, up to 30 minutes before accounting starts. No-window and expired calls take the direct path. Diagnostics still add bounded work while enabled. - A nearest nested owner is reported. Broad `http.request` and unattributed groups remain visible; this does not identify every service callsite or SQL shape. - The existing census excludes tagged/raw explicit-execute/streaming paths and internal protocol commands. Its counts are not PostgreSQL transaction totals. - Completion wall time includes queue/database/network/scheduling waits. Concurrent durations overlap. Sampled bytes exclude complex values, large strings, and values beyond the sizing limits. - Activation is startup-only. Operators must choose the window after artifact preparation, allow rollout/warm-up time, and remove the expired setting afterward. ## Model Used OpenAI Codex, GPT-6 family, with code execution, repository inspection, and parallel agents. The exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-02 12:12:21 -06:00
DottaandPaperclip	006d5691a6	feat(server): support volume-free web server handoff (#18518 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its web server also owns controller admission and user commands. > - A rolling deployment starts a replacement before the old server exits. > - Shared database state alone does not preserve local agent files, browser chunks, or in-process commands. > - This pull request adds an opt-in ephemeral server contract and a local overlap test. > - The benefit is a web server that can relinquish traffic and local files without losing acknowledged work. ## Linked Issues or Issue Description Refs #18403, #18327, #18335, #18341. Current behavior The control-plane web server still has local agent-file authority and local command targets. A new container can miss saved bytes or send a command to the wrong process. An existing browser tab also needs chunks from its original build. Proposed behavior Eligible servers share only PostgreSQL, object storage and stable secrets. A replacement waits for readiness. The old server drains admitted requests, keeps owner commands available through handoff, and releases controller leases. Explicit maintenance adopts existing files before the volume is removed. Reason and benefit This is the application prerequisite for rolling app-only deployments. Schema migrations and permanent multi-replica operation are outside this change. ## What Changed - Store agent-file manifests in PostgreSQL and immutable bytes in S3. Treat local roots as disposable projections. Preserve existing permission checks and edit conflicts. - Add an explicit migration, eligibility and object-retention command to the production runtime bundle. - Add `/api/ready`, admitted-request drain, browser restart signaling and retained immutable UI chunks. - Carry transaction-aware work hints across controllers during handoff and active execution. Keep listeners closed when idle. - Deliver durable Stop and runtime responses to the execution owner. Recheck request lifecycle and access before response dispatch. - Reject local-only configuration in ephemeral mode. Keep the feature disabled for existing installations by default. - Add an isolated PostgreSQL/S3/proxy/browser deployment harness with independent server homes and retained failure evidence. ## Verification - All CI checks pass on `ce17b95019d3cf1cabd357d19b6d37f96782cc5c`: workspace typecheck, build, Runner checks, server/general tests and browser shards. Greptile reviewed the runtime changes at 5/5 with all findings resolved; the final commit updates maps and the plan. - Local targeted checks passed: coordinator 27; Stop/recovery 33; PostgreSQL command delivery 6; route/workspace regressions 8; bootstrap Stop 1; restart recovery 75. PostgreSQL command tests simulate the provider edge. - Local browser proof passed 91 reads and 19 saves; reconnect took 1,013ms. The tab opened Audit from S3 after deletion of A's whole home/build. This uses compiled workspace code and local-trusted auth, not released containers or live agents. - Local workspace typecheck/build passed; current server and runtime bundle passed. The earlier broad local suite was stopped after three hours and is not a passing receipt. Its retained failures and isolated reruns are documented in the plan. - Stacked #18526 adds stricter graceful-exit proof, an unready replacement control, live Runner qualification and a Stop handoff correction. Hosted enablement remains gated on those results and Cloud #1096. No hosted stack has been enabled. ## Risks - Apply migration 0422 before enabling the feature. Existing data must pass each owner's migration and eligibility checks. Do not discard a volume based on a single migration page. - Durable manifests remain authoritative after the opt-in is disabled. Rolling back to a binary that ignores them is unsupported. - Cold directory restoration and complete shutdown timing still need qualification before enabling a hosted stack. - Retained UI assets must cover the supported browser and rollback window. Cleanup is explicit; no new idle maintenance polling is introduced. - This change does not claim production zero downtime or authorize a fleet-wide enablement. ## Model Used OpenAI Codex, GPT-6 family. The exact serving model ID and context-window limit are not exposed in this session. Used reasoning, code editing, shell execution and browser automation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-11-01 01:58:54 -06:00
DottaandPaperclip	eb12cfc96b	perf(github): activate connection work from events and deadlines (#18395 ) Reviewed and verified at `f77620b9a4`. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-31 15:38:43 -05:00
DottaandPaperclip	5e4cc01073	feat(workspaces): keep remote files off the webserver disk (#18403 ) Keep native sandbox workspace files independent of the webserver disk. Use encrypted saved versions and Postgres ownership so a replacement server can recover files and continue work. Enable the path by default for new eligible workspaces when durable storage is configured. Preserve explicit opt-outs and existing host workspaces. Include safe snapshot repair, Files access, import, migration and retention. Bound saved-Files resources, preserve imported Git recovery, reject unfinished Git operations, publish immutable concurrent captures, and verify permanent object-version deletion. Validated 471 targeted local controls, build/typechecks, all 40 CI partitions, fresh Greptile 5/5 and security review. The PR records original failed attempts and scoped retries. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-31 14:54:01 -05:00
DottaandPaperclip	b6b57079b9	fix: evaluate status cards on committed changes and deadlines (#18401 ) Reviewed and verified at `21795e222a`. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-31 11:41:59 -05:00
DottaandPaperclip	492d537340	fix(native): recover controllers across webserver replacement (#18343 ) ## Thinking Path > - Paperclip manages AI agents and their work. > - Native execution runs in a remote Runner while the webserver owns its controller. > - Encrypted PRP checkpoints and session snapshots already survive a webserver restart in Postgres. > - Ordinary warm and per-turn admission still needs local markers and supervisor metadata to find that state. > - Replacing the webserver with an empty native controller directory can therefore lose a usable retained session. > - This change adds bounded recovery metadata to the existing snapshot transaction and reconstructs local projections from the selected durable source. > - The benefit is native execution continuity across webserver replacement, with the existing ownership and agent lifecycle policies. ## Linked Issues or Issue Description What existing behavior does this improve? Native remote controller recovery and retained-session continuation during a webserver upgrade. Subsystem affected server/ — native runtime, checkpoint persistence, recovery scheduling and internal upgrade reporting. Product E2E qualification also changes. Current behavior Without both the local PRP marker and supervisor file, normal continuation can return before discovering the saved Postgres checkpoint. The snapshot already exists in Postgres, but its local reuse compatibility envelope cannot be reconstructed. Proposed behavior Select the existing durable source, validate its identity and ownership, restore its PRP state and supervisor projection, then use normal authenticated admission. Missing or inconsistent evidence holds recovery. It does not authorize fresh provider work. Reason and benefit A replacement webserver must recover active execution and later continue its retained session without the old server's native files. This is one component of deployment continuity. HTTP traffic switching, workspace storage migration and Railway rollout remain separate. Breaking changes No new public endpoint, schema migration or database pool. The private run-profile envelope is additive. Disk-independent rollback also requires a reader for the staged controller format and compact checkpoint part; the first production release containing these readers is the floor. Older file-backed sessions need an owner checkpoint or the bounded internal importer. Additional context Related foundations: #17401, #17916, #17254, #14621, #14622. The implementation contract and open acceptance gates are in [the dated plan](doc/plans/2026-10-30-native-controller-checkpoints.md). ## What Changed - Persist a versioned recovery envelope, at most 4 KiB, beside the redacted session snapshot in its existing transaction. Keep it out of public run projections. - Compare frozen admission separately from prepared attachment instructions during staged recovery, preserving exact template/identity/authority checks. - Bound the existing lazy checkpoint pool at three connections after measured two-slot burst backlog; keep request/renewal capacities and SQL operation counts unchanged. The tuning is a separate commit. - Discover and restore the exact selected retained source without local native markers. Preserve the 32-candidate window, progress barriers and current authority checks. - Fence snapshot and result writes. Acquire coordinator, issue and run locks in order and check expiry after lock waits. Combine snapshot ownership/read work into one statement. - Reuse existing recovery deadlines and drain/resume scheduling. Retained-owner waits preserve the original unstarted run and actual lease deadline. Stop, ownership and provider-progress fences precede deferral. Add bounded native evidence reporting, retained-source import and retention protection. - Admit a settled warm source with an authenticated idle goal-read suffix while retaining active-work and mixed-authority holds. - Permit lifecycle `turn.stop` checkpoints after accepted results under existing ownership fences. Claim the existing successor coordinator before retiring the old warm session, and stage shared attachments only after verified retirement. Preserve omitted isolated-home defaults and existing fresh skill-selection order during recovery without hiding real configuration changes. - Carry the exact durable six-field PRP binding during active recovery after a healthy warm handoff. Keep the Runner mismatch guard and preserve opaque attachment IDs. - Preserve an already verified active or idle warm process during remote preparation; revalidate its proof/liveness and retain later authenticated PRP attachment. Ordinary resumed leases retain suspension checks. - Drain retained source events under their original authority, reconcile immutable source accounting and block unknown source tool dispatch before target work. - Persist compact staged handoff intent through authenticated adoption and recover direct/listener command-loss windows without another Runner or duplicate attachment. - Rebuild suspended lifecycle receipts for resumed prepared tasks, and retry missing lifecycle reads after partial PRP materialization without overwriting contradictory evidence. - Add normal warm/per-turn diskless continuation coverage, real Postgres races and SQL-cost checks. Add a reproducible paired load workload. - Give only the explicit outage fixture a 15-minute provider idle window, with a red/green catalog regression preserving all production timing and lifecycle policies. - Publish the goal-less task-session pointer in the existing post-acceptance terminal checkpoint transaction, with current ownership, accepted-result, reset and newer-progress fences. Keep a private bound receipt so late completion cannot duplicate or resurrect publication. - Use a retained warm sandbox in the dedicated continuity fixture, and accept an exact output token followed by an explanation. Keep the strict identity oracle. - Extend the explicit Daytona cell to a five-minute active outage and another replacement after completion. Require retained provider identity, a new tool receipt and a useful follow-up result. Add an owned loopback Postgres E2E fixture for hosts that cannot start embedded Postgres. ## Verification Merge recommendation — `fc68584ce6231a02e47ecd743f55b036ccea034f`: ready for the qualified native-controller component. Full CI, fresh review, local application paths, controlled performance qualification and the strict live Linux/Daytona case pass. Independent resource cleanup is complete. Broader rollout, browser reconnection and the unexecuted transport/platform combinations remain integration gates. Integrated 484 passed full local recursive typecheck/build and ordinary active→completion→cache-loss→C component qualification. Fresh review then found a valid attached-wake failure: preparation appends attachment instructions before the verifier compares execution to the frozen admission. 9f4 fixes that by separately checking the pre-preparation admission and exact prepared execution. Both hashes are captured privately per admission; the full template, identity, configuration and authority checks remain. Its regression fails before the fix; 36 focused cases, 42 staged source/target cases and server typecheck pass afterward. The review thread is resolved. Exact-head full CI passes ([run 41168228822](https://github.com/paperclipai/paperclip/actions/runs/41168228822): 48 successful jobs, one intended skip); the complete `pnpm test:run` partitions are forced, with the five native suites in the Runner lane. This is not a claim that an unsharded local command passed. The fresh exact-head Greptile check succeeds with 5/5 and all six threads resolved. The original two-connection database comparison closes steady PASS and burst FAIL. Every relative CPU/WAL/request-p99 gate passes and all operations/ownership remain correct, but candidate arm 3 drains in 1,015.99 ms and baseline arm 4 in 1,059.67 ms against the unchanged 1,000 ms absolute gate. Those results remain failed. A separate 2→3→4→2 diagnostic reproduces drain times 1,051.57 / 956.79 / 882.02 / 1,065.72 ms: three is the smallest tested passing cap, and the repeated two-cap failure survives run-order/cache effects. Separately reviewable `fc68584ce6` changes the existing lazy checkpoint pool default to three connections. Request capacity stays ten and liveness two; idle release, shutdown fencing, transaction counts and pool count are unchanged. Thirteen DB lifecycle/cap tests and DB typecheck pass. Full recursive typecheck/build pass at exact `fc68584`, with the matching server build stamp. The final paired native feature-cost comparison explicitly uses the same cap-three policy and common current DB factory in both variants; its baseline is controlled, not the unmodified historical cap-two configuration. Original gates and workload counts remain unchanged. The one strict Linux/Daytona case started at 04:40:56 UTC only after both new profiles passed; it passed on the first attempt with all 49 workflow checks. Independent cleanup confirms all three owned sandboxes absent, owned Postgres/controllers/observer gone, VM terminated, root volume absent and ephemeral SSH key/agent removed. Final controlled cap-three qualification: PASS. Baseline native implementation `59da15066a` and candidate `fc68584ce6` use the same current DB factory and checkpoint policy (request/liveness/checkpoint = 10/2/3). Eight 65-second ABBA arms cover 300 controllers and 10,000 historical tasks. All correctness, absolute and 10% relative gates pass; original cap-two failures remain unchanged. \| Mode \| DB CPU µs/op, baseline → candidate \| WAL B/op, baseline → candidate \| DB-request p99 ms, baseline → candidate \| Maximum drain \| \| --- \| --- \| --- \| --- \| --- \| \| Steady \| 542.40 → 554.83 (+2.29%) \| 1509.01 → 1558.27 (+3.26%) \| 107.11 → 111.90 (+4.48%) \| 26.35 ms \| \| Burst \| 1036.36 → 1063.11 (+2.58%) \| 4153.12 → 4317.64 (+3.96%) \| 103.736 → 103.841 (+0.10%) \| 930.14 ms \| Every matched arm preserves operation/statement/transaction counts, including 3,900 PRP and 3,900 snapshot transactions. All three actual pools are included; there are zero lost owners, missed lease deadlines, dropped operations or errors. Peak Postgres CPU is 18.31%/9.47% of two cores and memory 614.29/684.42 MiB (steady/burst). The benchmark uses one Node process simulating 300 controllers; it does not qualify two-webserver overlap, HTTP latency or hosted capacity. Its observer SQL contributes to measured database CPU. The original unmodified cap-two baseline is separately retained as failed; this cap-three comparison is explicitly controlled. The exact final-source 8/512/8,192-chunk test also passes: zero recovery SQL, transactions or changed rows in each text-only interval, zero idle SQL, seven lifecycle transactions and twelve changed rows per sample. Existing lease traffic remains separate. The final ordinary managed application replay passes active recovery, completion, native-cache removal and C continuation; its UNKNOWN local debug-daemon provenance and partial instruction-observer limits remain recorded. The live case uses the attested Linux producer instead. Live qualification: PASS, one attempt, no retries. Campaign `native-controller-retained-fix-fc68584ce6-ec2-20261031T044055Z` started 04:40:56 UTC on the exact final Linux webserver source; suite definition hash `12f9bb97823c1537e43f0398e7cddf39890f77bce7b413ca4dfd944f4a30e5d5`. The existing immutable image and attested Bookworm Runner artifact are unchanged. - A was SIGKILLed and its native cache discarded. B started after 300,149 ms, naturally acquired generation 2, authenticated at 316,624 ms and resumed at 317,682 ms within the original 420,000 ms grace. The same active run, Runner, provider PID/start fingerprint and one submitted/started/accepted turn were preserved; one final result/terminal and workspace finalization completed, with no retry/recovery action. - After active and queued completion, B was SIGKILLed and its native cache discarded again. C received exactly one ordinary task-comment API follow-up, completed a new tool and produced a useful reply while preserving native/provider/Runner identities. This closes the earlier failed post-C gate. A separate C OS-process PID field was not exported; the physical-PID proof is specifically A→B. - Four distinct results were accepted and published; all four finalizations committed at attempt 1, all four accounting-v2 projections settled, and the task-session pointer advanced to C. The coordinator independently checked these facts and all 49 canonical checks against the sanitized receipts. - Canonical cleanup passed and independent checks confirmed three exact sandbox 404s plus complete inventory/zero owned remnants, no owned PG or controller/observer processes, EC2 terminated, root volume absent, and the ephemeral SSH key/agent removed by 04:54:25 UTC. Live scope is classic remote Codex warm continuity with non-native storage dependencies available. Prepared-task completed B→C, full per-turn application disk loss, browser reconnection, two-server load and overall Railway/HTTP continuity were not live-qualified here. Earlier failed campaigns and the original cap-two burst failure remain failed historical evidence. A report-renderer cache setup failure was preserved; the normal sanitizer subsequently succeeded with an explicit cache path and a new output directory, without changing validators. The repair keeps retained events under their original six-field authority until persistence and accounting accept them. Unknown semantic effects stay unresolved. A compact staged target survives source bootstrap, cached-command delivery and authenticated handoff, including an uncertain commit response. Direct and same-guest-listener recovery require the verified original Runner and the exact endpoint. Target snapshot publication marks readiness in memory, with retirement coalesced into an existing command write. Headers contain only the staged descriptor/digest; a prequeue template is written once as a changed checkpoint part and then recovered from the existing command/receipt. No second session snapshot transaction, streaming SQL path, new pool or recurring idle scan is added. \| Current repair gate \| Evidence and scope \| \| --- \| --- \| \| Source-tail regression \| Real Runner protocol RED reproduced attachment rejection. Frozen core/transport pass five source-tail cases: source usage attribution, held persistence/no premature ACK, lost commit response plus cache loss, unknown semantic hold and accounting rejection hold. \| \| Handoff loss windows \| Direct and listener modes pass queued/prepared/activated/completed boundaries (eight cells), preserving the actual Runner/provider process. Missing adoption proof and changed endpoints reject recovery. \| \| Compact storage \| A 31 KiB attachment grant writes its separate part once, leaves it unchanged across source snapshots and removes it at queueing. Headers do not duplicate the grant. \| \| Accounting \| 21 real-Postgres usage tests and 19 source-binding tests pass. Recovery hydrates immutable source receipts without resetting their producer or billing classification; conflicting/incomplete usage holds. \| \| Admission and malformed evidence \| Driver 16, staged evidence 42, restart classifier 27 and source usage 19 focused cases pass. Four malformed-file regressions pass at d6a7, whose executor is byte-identical at 484, and server typecheck passes. Full executor file: 990 pass; 16 embedded-Postgres `initdb` setup failures before assertions, retained separately. \| \| Required checks \| Exact `fc68584` recursive typecheck and build pass locally, with matching server stamp. Forced full CI succeeds (48 jobs pass, one intended skip); all PR checks are clean. Maps/token gates pass for their unchanged source surfaces. Fresh exact-head Greptile is 5/5, all six threads resolved. \| \| Ordinary application path \| Exact `fc68584` managed component passes active recovery after natural expiry, completion, native-cache loss and ordinary C continuation. Production bytes match before/after; temporary fixtures restored and owned DB/services cleaned. UNKNOWN local debug-daemon/partial instruction-observer limits remain; the separate live case uses the attested Linux producer. \| \| Producer \| Locked Bookworm build from exact 5b7 Rust tree `d03e494217`, equal to final `fc68584` Rust source. SHA-256 65b8f8cfdd6099e9ad24f1ca154e8a260777269cc82f6e23c6e6a180c531eaaf; 38,515,328 bytes. Actual Debian 12 execution and live admission pass. Controller/admission/DB changes do not relabel the producer source. \| \| Historical cap-two comparison \| Exact 59da baseline vs 5b7 candidate, 300 controllers/10,000 history, ABBA 4×65 s per mode, all three actual pools and real snapshots. Steady CPU/op 541.36→554.64 µs (+2.45%); WAL/op 1512.13→1560.99 B (+3.23%); DB-request p99 102.78→105.99 ms (+3.12%): PASS. Burst CPU/op +4.71%, WAL/op +5.29%, p99 −0.10% pass relative gates, but absolute drains above fail. Identical operation/SQL counts, zero lost leases/drops/errors. One Node process simulates 300 controllers; this does not qualify two-webserver overlap or HTTP capacity. \| \| Live acceptance \| Strict final-source Linux classic Codex case passes 1/1 on attempt 1, all 49 checks. Active recovery within grace and useful retained C continuation succeed; four accepted/published/committed/settled outcomes. Independent provider, PG/process, VM/root and SSH cleanup complete. Prepared/task and broader rollout limits are explicit above. \| Historical qualification snapshot through `9eb9ac6`. The head at this snapshot was `9eb9ac6f9e312f3ebe8040f5a7565e88ae8824f3`. Server and Runner package sources are byte-identical to `283e05ffaa`; the two later commits change the explicitly scoped qualification and its documentation only. It includes master through the storage-owner fix `45a3a92e6dc52d20923b9aa34a22fee2ec5443f9` (#18357). At that snapshot, CI/review passed but the strict post-C native recovery gate failed; the PR stayed draft and required another native repair. Prior `39a4343` CI and review passed, but its full live workflow failed; that grade remains unchanged. The first repaired `435ccd2` live attempt failed before any injected outage. It exposed a legitimate terminal snapshot before result acceptance; no accepted result ID or publication receipt was observed. Its canonical report remains 0/1 `candidate_failure`, with cleanup passed and independent provider absence confirmed. `0862062` defers publication until result acceptance and fixes the fresh review's coordinator/issue lock-order finding. Both failures have deterministic real-Postgres regressions. The `0862062` live attempt then proved accepted-result publication but failed active recovery: a resumed-lease preparation guard demanded suspension after the exact live Runner was already verified for adoption. `64c0b746` preserves that verified active/idle-warm process, revalidates its proof/liveness, and keeps ordinary suspension checks and later PRP authentication. Its live run passed preparation but exposed a second active-warm boundary: all durable binding fields matched except opaque turn/item attachment IDs, which the server had regenerated. `7a203274` carries the complete verified six-field binding and keeps the strict Runner mismatch guard. Its cloud case then passed active adoption, completion, publication and accounting. The queued continuation exposed accepted-result retirement writes and an implicit-home fingerprint drift; both are fixed with deterministic regressions in `39a4343` before this fresh full qualification. The prior live case exposed a real publication gap. A goal-less native turn could persist its accepted result and terminal snapshot before provider cleanup, while the task-session pointer was still empty. Normal later admission then selected a fresh session. The fix publishes that pointer and a private bound receipt in the existing post-acceptance terminal checkpoint transaction, before cleanup. Earlier terminal observations persist without a handled receipt or continuation pointer. No result-acceptance or snapshot transaction was added. The late completion path recognizes the receipt. This also prevents a late callback from restoring a pointer after a user reset. Goal/control publication keeps its existing owner. The dedicated Daytona fixture now uses the existing warm/reusable environment. Its sandbox, Runner and provider storage must survive. The former generic per-turn fixture disposed the sandbox after completion and kept provider-history backup bytes under the discarded directory. Whole per-turn disk-loss acceptance therefore has a separate provider-backup storage dependency. It remains distinct from the passing native per-turn component checks with backup storage available. The 60-second lease, 300-second outage and 420-second grace are unchanged. \| Gate \| Current repair evidence \| \| --- \| --- \| \| Assembled regression \| Baseline fails with an accepted result and terminal snapshot but a NULL task pointer while real provider cleanup is held. The fix passes normal continuation and reset cases, with no pointer seeding. Exact merged `92b7447` passed 2/2 twice, including after normal package TypeScript output refresh. Production files are byte-identical at frozen `435ccd2`. \| \| Persistence and concurrency \| 19 helper/transaction cases and all 59 existing control-port cases pass on `0862062`. They cover bound result IDs, reset/newer epochs, Stop, lock waits and expiry, receipt replay, missing stubs, foreign bindings and atomic 4 KiB rollback. Existing snapshot transaction count stays one. The new tests reproduce the exact live missing-result-ID error and the inverse replay/status lock order against `435ccd2`, then pass after the correction. Replayed results still reject stale generations. \| \| Completion \| All 32 completion-boundary tests pass on merged `92b7447`; the source is unchanged at `435ccd2`. Native result-shaped session metadata is preserved. \| \| Qualification fixture \| A valid review report reproduced three rejected correct replies. Exact token-boundary matching fixes them. 140 focused E2E/catalog cases and Product E2E typecheck pass. Wrong tokens, marker prefixes/suffixes and wrong authors remain rejected; retained-identity checks are unchanged. \| \| Required checks \| Full recursive typecheck and standard build passed at `435ccd2`. Both exact commands also passed on `0862062`, with its exact server build stamp; both also pass on `7a203274`, with its exact server build stamp. Fresh `0862062` Greptile passed 5/5, with zero unresolved threads. The `64c0b746` normal CI then passed all 49 jobs (48 success, one expected skip) and Greptile passed 5/5 with zero unresolved findings. The `7a203274` normal CI also passed 48 jobs with one expected skip, with fresh Greptile 5/5 and zero unresolved findings. Current `39a4343` recursive typecheck and standard build both pass with persisted exit codes and its exact build stamp; fresh Greptile is 5/5 with zero unresolved findings. Its normal CI completed successfully: 48 jobs passed and one expected job skipped. The fresh live result remains separately failed. The `0862062` normal CI had 46 passing jobs, one expected skip, one worker communication failure and its aggregate failure; GitHub states the self-hosted runner lost communication. No failed assertion or specific OOM/spot cause was established, and no blind retry was used. \| \| PostgreSQL supplement \| One corrected all-pool pair at the preceding repair passed 300-controller/10,000-history correctness and absolute gates. SQL 76,590→75,990; transactions 9,013→8,713; UPDATE rows 11,613 each; 300 correct pointer writes each. PG CPU 31.99→30.46 s, WAL 70.36→67.87 MB, request p99 100.98→103.12 ms. This is one pair, not a repeated improvement claim or an exact `0862062` CPU measurement. Its two later changes defer premature publication and reorder existing locks; they add no transaction, stream/idle writer, pool or timer. The first collapsed-pool attempt remains invalid and retained. This is not an exact final-head CPU/WAL measurement; later fixes change ordering, identity selection and in-memory skill replacement without adding snapshot transactions, pools, stream writes or idle SQL. \| \| Live publication proof (`0862062`) \| Baseline run `06fcc806-f186-4190-9b57-087b61d75533` accepted result `58f912dc-94d9-4b4d-bd3d-d5f689c83fd3`; the publication receipt names the same result, the task pointer has parameters and `lastRunId` matches, and the normalized native identity matches the following active run. Accounting v2 settled. \| \| Active recovery (`0862062`) \| FAIL. SIGKILL/cache discard at 23:07:28.666 UTC; hold 300,000.859 ms; B ready at 308,896.486 ms; natural generation-2 ownership at 312,906 ms. At about 319 s, preparation failed `runner_harness_state_mismatch: resumed_not_suspended`. No authenticated after-receipt passed within 420 s. Exact original Runner PID 668/start/fingerprint was independently still alive; provider auto-stop was 15 minutes. No retained C follow-up qualified. Canonical 0/1 `cleanup_failure`/cleanup-failed report remains failed; subsequent independent cleanup deleted all three owned resources with exact 404s and confirmed full intended-account inventory with zero owned resources. \| \| Verified adoption preparation (`64c0b746`) \| 91 focused cases pass, including actual preparation for four active providers and a distinct prior/current warm proof. Unproved resumed state, dead process and stale warm owner remain rejected. The earlier options-only fixture missed this gate. No spawn, backup restore or PRP-authentication bypass was added. Server typecheck passes. \| \| Active warm identity (`64c0b746`) \| FAIL. B claimed generation 2 at 312,995 ms. Preparation passed, then strict PRP recovery rejected the generated attachment IDs at about 319 s. The saved and desired Runner, lease, normalized session and run IDs matched; only `turn_attachment_…`/`item_attachment_…` differed from generated `turn-<run>`/`item-<run>`. Canonical 0/1 cleanup-failed report remains failed; independent cleanup confirmed deletion/404s and zero owned provider resources. \| \| Six-field identity repair (`7a203274`) \| Actual server-factory regression RED4→GREEN38. A real Rust Runner test passes healthy first run → random-ID warm handoff → held active second run → restored controller. It verifies a new live authenticated connection, exact identity, same Runner/provider OS identities, no duplicate launch/turn, and no redispatch or invented receipt for an uncertain tool. The synthetic wrong pair still fails the unchanged guard. This protocol case does not claim business completion. Server and Runner typechecks pass. \| \| Active recovery/completion (`7a203274`) \| PASS for the active component. Full five-minute SIGKILL/cache-loss hold. B ready at 308,936.651 ms; natural generation 2 observed 312,979 ms; authenticated at 317,720 ms and resumed processing at 318,527 ms. Same run `1e1ccb00-0728-4935-97da-57562d81cb42`, Runner `246f73f7-a689-4177-a9c2-7ce711d63aed`, remote PID 669/start 23:48:27.470, provider lease/session and one submitted turn. Accepted result `49097529-5310-4ac3-af95-5bf9b91d19f4`, publication, finalization and accounting v2 all settled. \| \| Full workflow (`7a203274`) \| FAIL, preserved. Queued late-requirement run `5e61f38d-c7d1-4fc1-bcbf-bce9d46ce4eb` failed `runner did not durably suspend before checkpoint` before outage 2. Canonical 0/1 candidate failure, cleanup passed, evidence valid. C retention was not exercised. Independent provider absence, controllers/PG cleanup, EC2 termination and root-volume absence all confirmed; closed receipt SHA-256 `676a3b15eb9937b6bf995c36fb8666c88964d509e5ceb9109fb02da0aa2bc909`. \| \| Retirement and stable configuration (`39a4343`) \| Real Runner + Postgres RED reproduced the exact suspension failure and nine owner rejections. `turn.stop` is now lifecycle checkpoint maintenance under unchanged owner/result/generation fences. GREEN25/25 proves actual persisted suspension, exact identity and completed stop/drain/suspend; unaccepted, foreign, stale and new-work negatives remain rejected. Two default-home fingerprint REDs become GREEN9/9; explicit mode changes still invalidate. No global matching exemption or historical fingerprint rewrite. \| \| Fresh full Daytona warm cell (`39a4343`) \| FAIL, preserved. Launched 00:15:29 UTC with automatic retries disabled. Active adoption passed: actual offline hold 300,000.848 ms; B ready 309,922.155 ms; natural generation 2 at 311,821 ms; authenticated 317,989 ms; resumed 330,440 ms. Same run `3e126819-e786-4b3b-b923-c975cf4f5b79`, Runner `4079138a-8d7c-44a4-8558-07a5411d1f55`, PID 668/start and provider/session identities. Accepted result `08e504af-4dec-48a8-bf05-bf0a32280559` and publication passed. Queued run `31d168c9-7ab9-4700-abb6-fafb90912237` failed the same strict suspension error before outage 2. Its row selected a new native identity, but no new third provider process or invocation was observed. Recovery-time configuration still reset only `adapterConfig`; native provider, context and workspace subtrees were unchanged. Canonical 0/1 candidate failure, evidence valid, normal cleanup passed; all campaign provider/PG/process resources independently absent. Closed campaign receipt SHA-256 `5e7d6281c13c812f3a946667f97f3c7d339b5ad86a3a819bd185b2fa73bc4a19`; EC2/SSH remain temporarily held for the concrete follow-up repair. Original 60/300/420-second limits and strict queued/second-replacement checks remain unchanged. Direct-process path; no new live prepared-task claim. \| \| Native retirement authority (`283e05ffaa`) \| Exact `39a4343` facade regression RED3→GREEN9. The successor now uses its existing production coordinator claim and prompt renewal before strict retirement. A real Runner/Postgres case starts in the actual native-observed/unclaimed phase, claims through production code, then closes and durably suspends the predecessor in 1.657 s. All 25 real-Postgres cases pass; unclaimed/foreign writers remain rejected. Shared attachment staging stays after retirement; Stop and denied claims neither close nor stage. No new claim or SQL path was added. \| \| Configuration continuity (`283e05ffaa`) \| Real shared/project-primary environment selection → configuration with four skill versions reproduces `reset: true`, changed category exactly `adapterConfig`, after a Postgres JSONB read. Pinned restoration had reordered the generated preference while actual runtime skills stayed identical. Replacing existing pinned rows in place preserves the original fresh name/key order and fingerprint. The assembled regression passes, as do three existing pinned-version/rename/alias cases and server typecheck. Genuine model/skill-selection changes still invalidate. No fingerprint-format change or broad compatibility exemption. \| \| Final production repair (`283e05ffaa`) \| Full recursive typecheck/build and [normal CI](https://github.com/paperclipai/paperclip/actions/runs/41151145106) PASS: 48 jobs plus one expected skip. Fresh review 5/5, zero unresolved threads. Live baseline, recovered run and queued continuation all succeeded, each accepted/published/committed once with accounting v2 settled. Their native/provider identities and configuration fingerprint match; both recovery and continuation report no reset, no changed categories and task-session reuse. Active outage/authentication remains within original timing. \| \| Browser-dependent continuation (`283e05ffaa`, definition 6) \| Whole cell FAIL, preserved. After B was killed at 00:46:38.928 and its cache discarded, C became ready in 9,151.410 ms. `openParent()` then hit a 30-second `page.goto`/DOMContentLoaded timeout before posting the final request. No fourth native run or C continuation was exercised. Cause of navigation timeout is unknown. C task had no execution lock, queued comments, handoff or recovery blocker; all three prior runs were committed/accounted. Normal cleanup passed; independent provider absence, controller/PG cleanup, EC2 termination and exact root-volume absence confirmed. Sanitized report bundle SHA-256 `2a3b841d62efb2ae30ef14f96a431ac4fa7fe3a782f1144831512f78edc65022`. \| \| Native API continuation qualification (`9eb9ac6f9e`, definition 7) \| FAIL, preserved. The real post-C API request dispatched run `c71fbb18-f979-4fe4-93ce-9c4be46dbf21`, which failed `native_session_interrupted` / `native_session_recovery_failed` at 01:10:00.640 UTC. It selected the same normalized native identity, Runner and checkpoint-provider identity as the three succeeded turns. No C result was accepted; pending accounting remains explicit. Active recovery passed: actual offline hold 300,001.098 ms, B ready 308,335.019 ms, natural generation 2 observed 311,818 ms, authenticated 315,540 ms, resumed 316,612 ms. Queued continuation succeeded/accepted/published. B was then killed/cache discarded at 01:09:34.500 and C ready in 8,783.803 ms. Original classifier `transient_infrastructure`, whole-case failure and cleanup passed are unchanged; that classifier does not establish the root cause. All owned provider/PG/process resources, EC2, root volume and SSH agent independently absent. Closed receipt SHA-256 `7f21ac4a22efc07b849fa7e17866083b6127b3321af12671b4fc054ce57039a9`; sanitized bundle `71ffef14a30a553e008320a31840a6d6c0de85c1bfdb60f783fdb53a6aae812a`. Exact backend detail is unavailable in approved structured evidence. \| \| Current required checks (`9eb9ac6f9e`) \| Recursive typecheck, standard build and exact build stamp PASS. [Normal CI](https://github.com/paperclipai/paperclip/actions/runs/41152908417) PASS: 48 jobs plus one expected skip. Fresh Greptile 5/5, latest edited summary checked, zero unresolved threads. Exact8/512/8,192 stream probes again report zero recovery SQL/transactions/rows and settled-idle SQL; seven control transactions/twelve changed rows each, with 36 separate legitimate renewals in the longest case. CI success does not supersede the failed live C gate. \| The completion supplement observed secondary request/liveness/checkpoint transaction p99 increases of 23.0%/45.7%/15.6% in its single pair. Renewal p99 stayed below 0.865 s, with 900 successful renewals per arm and no lost leases. The named pool caps stayed 10+2+2. An aggregate activity sample peaked at 15 non-observer entries without backend-type classification, so no claim is made that all were client connections. No sampled lock episodes does not establish zero lock waits. Twelve pure reader/selector cases also pass with the new adjacent receipt. This is not another executed process rollback. Development reader `5cf7aead` can parse the recovery state, but its old run-detail redactor can expose receipt IDs/outcome to an authorized run reader. The first production release containing recovery readers, complete attachment-identity handling and both private-field redactions is the rollback floor. The implicit-home fix prevents new recovery-time fingerprint drift; it does not rewrite previously stored fingerprints from failed candidates. The development probe is not a published supported rollback target. Latest actual `0862062` Runner tests independently passed 8/512/8,192 text chunks with zero recovery SQL, transactions and changed rows, plus zero settled-idle SQL. All three observed seven setup/control transactions and twelve changed rows. The 8,192-chunk case separately recorded 31 legitimate lease-renewal statements, with no lost lease. These are component SQL observations, not a production CPU/WAL claim. The new adoption and identity branches affect recovery preparation only. The `64c0b746`, `7a203274` and exact `39a4343` CI independently passed all three stream sizes with the same zero-SQL/idle result; each latest 8,192-chunk case recorded 36 separate renewal statements. Exact `39a4343` Runner 2/2 passed 133 files / 2,317 tests plus two skips; its separate native group passed 150 tests plus eight skips. The first API fixture revision omitted the mandatory final screenshot; this was caught before paid launch and allocated no provider/model work. The correction captures the actual retained Chromium page with an explicit unqualified-browser label, without changing the standard report validator. Automatic approval review rejected exporting raw private API/workflow snapshots because of sensitive payloads and insufficient destination-specific authorization. Sanitized reports and bound/hash-only receipts are retained; raw snapshots were not copied through another channel. This does not change the failed grade. Repair characterization also preserves its failed attempts. An unconditional staging relocation broke three existing same-scope scripted cases; the final implementation defers staging only for an actual superseded warm scope, and all nine order/race cases pass. One baseline transform overlapped an edit and is explicitly invalid; the actual immutable `39a4343` loader then produced the three genuine REDs. The independent task-directory hypothesis produced a RED but was excluded by the live shared-workspace evidence; no directory policy change was landed. A shared-workspace fixture authorization omission was corrected separately from the four-skill semantic RED. Setup failures are retained separately from semantic outcomes. These include an old host port after the owned Postgres fixture restarted and a sandbox-denied TSX IPC pipe. The supported external-Postgres run passed, and the final exact recursive typecheck passes with normal process permissions. Seven stale declaration errors after the master merge cleared after compiling the actual merged SDK/Runner TypeScript sources. No declarations were edited by hand. <details> <summary>Earlier qualification measurements and failed attempts (historical, before this repair)</summary> Historical blocked gate (before the repair below). Final native implementation is `abed921e12d543b62f57a56435419c0dafb0bc33`; current branch head is `af9e2d157dcc349e55374ad186c9be2d6cb96bf9`. The two later commits change only qualification fixtures, their matcher and documentation; `server/` and `packages/` are unchanged. It includes master through `fd008979f5794fda3d5f54151d36acd31d0de140`. The live Daytona measurement proves five-minute active recovery, once-only completion and accounting, but fails retained-session identity after the second replacement. The saved checkpoint and recovery metadata exist. The task-session pointer remains empty, and ordinary admission creates new native/provider sessions. The exact skipped publication boundary remains unproven. A useful saved-file result alone does not satisfy retained-session continuation. This application-path gap blocks merge independently of CI. A separate new-master CI failure is owned by the storage workstream (fix in #18357). No storage guard, session-identity oracle, lease/grace limit or provider result was relaxed. \| Gate \| Observed result and exact scope \| \| --- \| --- \| \| Distinct source recovery and compatible rollback \| PASS at A `5cf7aead09a2d9c7e2f2929d761f535ef3c1d798` → B `5ea45f8d17e33c9a62bd79982dcf0375b07733d0` → fresh B → A. Four controller processes, natural 60-second lease expiry, absent native projections before replacements, three succeeded/committed unique results, one provider thread, unchanged Runner identity, and strict idle cleanup. 177.782 seconds. \| \| Immutable installed native component \| PASS at installed A `5cf7aead09a2d9c7e2f2929d761f535ef3c1d798` → installed B `eaef0d56552c087aaa4fa68a8655282ffbd12667` → fresh B → A. Each controller imports its contained compiled server and DB. Three unique committed results, stable Runner/thread, no extra provider restart on same-contract rollback, strict cleanup. 106.672 seconds. This is compiled component proof, separate from full CLI-native application acceptance. \| \| Normal public CLI startup \| PASS for B `eaef0d56552c087aaa4fa68a8655282ffbd12667`, Node 24.22.1, darwin-arm64: fresh external DB, 415 migrations, health ready, root HTML 200, company POST 201 plus GET readback. The installed tree remained unchanged after execution. \| \| Five-minute component outage \| Actual controller absence 300,168 ms. Natural generation-2 claim at 407.196 seconds after crash, same provider attempt and Runner, original run succeeded/committed. The larger 540-second case timed out before its retained follow-ups, so it is an active-adoption pass, not a complete four-controller pass. The complete short source/installed cases above independently cover follow-up and rollback. \| \| Drain/resume review regression \| Fixed in `226f03e736d1ee99fea1762ab32ea3a8a9241c20`. Five facade-level cases pass: overdue normal/restart waits, future timer cancellation, another facade resuming the original owner, and transient retry. Against exact prior scheduler `5ea45f8d17e33c9a62bd79982dcf0375b07733d0`, four fail and one passes. The later head changes documentation only. \| \| Final corrected-fixture Daytona \| PARTIAL: active recovery PASS; retained identity FAIL, exact live source `0b6afc499f`. A was SIGKILLed and native cache discarded; actual offline hold 300,000.375 ms. B was ready at 308,326.961 ms, naturally claimed generation 2 at 312,059 ms, authenticated at 315,996 ms and resumed processing at 316,519 ms, within the original 420-second boundary. The same run, Runner PID/start, session, lease and event prefix survived; one turn submitted. Original execution succeeded and settled accounting. After completion, B was killed and its native cache discarded; C was ready in 9,077.779 ms. C executed the saved project and returned correct `queue_r`, with all four runs succeeded/accounted. However, native and true provider-session identities changed: the unchanged retained oracle fails. No whole-workflow pass is claimed. \| \| Prior matched-producer Daytona \| FAILED at exact `abed921e12`. The matching current-source Runner passed normal admission, completed the first task and settled its accounting. During the active revision, A was SIGKILLed and its native cache discarded. Actual offline hold was 300,000.727 ms; B was ready at 308,304 ms and naturally claimed generation 2 at 309,651 ms. At about 318 seconds, the remote process check reported `process_not_running` for the original admitted Runner. No authenticated after-receipt or retained follow-up passed. The current failure is preserved; no automatic retry, lease/grace relaxation, debt edit or provider replay is used. Bounded forensic read found preserved exact-bound state with no recoverable failure, a transport-reset diagnostic and no terminal delivery; this supports external process loss without proving the exact cause. The sandbox had a five-minute auto-stop policy, conflicting with the required surviving-sandbox assumption. Owned cleanup precedes the separate corrected-fixture case. \| Live retained-session boundary. Prior completed run `3806…` and C follow-up `8adf1df3-6744-40bf-b35d-100451f29d9f` both have database session snapshots and `nativeControllerRecovery`. Their tool fingerprint, provider configuration, workspace descriptor, runtime-context digest, driver and work mode match. There is no recorded force-fresh/workspace-selection change, and this is an ordinary task rather than a conversation-generation reset. The same issue/agent task-session row has `session_params_json: null` and `last_run_id: null` from baseline time. Both native normalized UUID and actual provider session/thread hashes differ after C. Full application admission therefore did not select the retained source. No fallback to file execution or relaxed identity comparison is accepted as proof of continuity. Independent cleanup completed. Full current-account provider inventory confirms no resources owned by either final fixture, with exact-ID absence checks. Owned controllers and campaign Postgres are stopped/removed. EC2 `i-01551c09af098dde5` is terminated, its delete-on-termination root volume returned `InvalidVolume.NotFound` at 22:14:08 UTC, and the temporary SSH key/agent were removed. The canonical failed report and immutable oracle input are retained. Closed qualification receipt SHA-256: `b4b5fefce287ebfdbf2cc2238efaad62d8ad485aed0e9c0628ae95dbc18a8575`. Original measurement and grader repair remain separate. The C reply contains the requested marker followed by a newline and the correct output. The old workflow waited for one literal space, so its normal receipt collection stalled; that original attempt was closed and its canonical `cleanup_failure`/interrupted result is preserved. Commit `af9e2d157d` repairs only this reply predicate, with 144 focused cases, E2E typecheck, discovery and diff checks passing. Ordinary string matching stays literal. The corrected predicate accepts the saved reply, but the unchanged retained-identity oracle still fails. Pure active-recovery grading of the captured measurement passes 7/7; this is not a rewritten passing campaign. The sandbox idle-window conflict was corrected only for this explicit fixture (15 minutes). Actual baseline and later sandbox metadata confirm that policy; the original active box was disposed before a post-gate policy read, so its 15-minute setting is established by the normal create/environment configuration rather than an after-read of that box. Production native lifecycle and the 60/300/420-second constants remain unchanged. The development compatibility reader A is a genuine backport commit based on `59ff89a18fe1312b5f0bb908439bbdb1237b0252`, with the required idle-goal reader fixes. It is not a previously published release. Its older executor differs from B. The rollback floor must include this reader capability. The source component cases admitted the Linux ARM64 Runner packaged at `59ff89a18fe1312b5f0bb908439bbdb1237b0252`; the installed component case admitted the `5cf7aead` package. Their Runner bytes are identical: SHA-256 `b1f04caa1ce04e720dec7eb62ede170eb3621948c0849b8f305ea5c5116bced8`. Each admitted artifact remained unchanged throughout its case. [Final public package build](https://github.com/paperclipai/paperclip/actions/runs/41121460635) and [reader-floor build](https://github.com/paperclipai/paperclip/actions/runs/41122170506) both passed all four daemon builds, package assembly and both Darwin clean consumers. Both Linux ARM consumers failed before provider work with the same existing local Codex permission-profile error: bubblewrap attempts `activity.fifo/.git` and reports “Not a directory.” This matched baseline failure remains open; it is not a native remote continuity pass. Full post-run tree and build-stamp revalidation also passed after the compiled native case. The installed component trees are A `c29114c1bf71c5af00f761aeb9e3d84ed3d3075b9f5600dee3ef2543eb2b6ec5` and B `eda575505373a3bdc630fa4919862b359791fe3a7ef637961a25b73b38efe4b0`. Controlled PostgreSQL qualification passed. Baseline/candidate/candidate/baseline workloads used 300 controllers, 10,000 historical tasks, real snapshot/encrypted PRP writes and unchanged pools. PostgreSQL and client were each limited to two CPUs and 1536 MiB on an isolated eight-vCPU Linux host. \| Workload \| PG CPU per operation \| WAL per operation \| Database request p99 \| \| --- \| ---: \| ---: \| ---: \| \| Steady \| +1.18% \| +1.81% \| +1.91% \| \| Aligned burst \| +3.40% \| +2.56% \| +3.81% \| \| Two logical servers \| +3.11% \| +2.56% \| +9.68% \| All arms passed absolute/correctness gates with unchanged control transaction counts, no dropped operations and no owner loss. Overlap p99 has little margin below the relative threshold. It uses two clients in one Node process, not two HTTP servers. [Closed measurements and limitations](doc/plans/2026-10-30-native-controller-qualification-evidence.json) and exact-source reproduction patches are retained. [Earlier contended-host failures](doc/plans/2026-10-30-native-controller-load-evidence.json) remain unchanged. The production DB-claim probe claimed 300 owners in 2.84 seconds and restored/committed controls and snapshots in 8.74 seconds, with zero owner loss or settled-idle SQL; its provider references were synthetic. The measured checkpoint/snapshot/renewal paths retain the same persistence behavior after integration; later accounting and business writes have separate owners. Actual Runner stream tests at `da8c7f6e1837ddd896dfe83a7524812fee813487` passed 8/512/8,192 chunks: zero recovery SQL, transactions and changed rows during text intervals; zero settled-idle SQL. Each retained seven control transactions and twelve changed records. Existing renewal SQL was measured separately. The guard/scheduler fixes add no stream path, pool or recurring idle scan. The live fixture used current-source producer SHA-256 `f0000c90cb83880191479da639201e659aa6ce0fc7d67c859faa172ec977849e`, a normal locked exact-head build with pinned Rust 1.97.1 in Bookworm. Actual network-isolated, read-only ABI execution passed (GLIBC requirement 2.34 against runtime 2.36). The immutable base image remained `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:36069788f53c51f228764fa36180575443dfb5d1f84a342d7c0daceb28dc61cc`, source `a0ef3ce7`. This was an unpublished development producer, explicitly distinct from the base image and admitted before the fresh fixture began. The earlier host build failed ABI preflight before admission. The preceding old-producer fixture completed its initial task but lacked the usage-basis marker required by current master; it remained pending/unpriced and correctly paused. It was independently cleaned without debt or budget changes. Two preceding local Linux setup attempts OOM-killed before provider allocation, and their cleanup passed. These attempts remain separate from the final recovery failure. Failures retained and resolved separately. The earlier `98f05fc` probe rejected a valid settled PRP v2 goal suffix; `eaef0d5` fixed that reader and the fresh follow-up passed. Later component cleanup failures were traced by a scoped exception observer to the fixture adapter rejecting directory downloads. A bounded owned-directory transfer with exact-byte/mode preflight corrected the fixture; source and installed strict-cleanup cases then passed. No production guard was relaxed. The initial local integrated control-port run hit its 30-second embedded Postgres startup hook before executing 59 cases; 18 other focused cases passed. A bounded rerun used a fresh owned external Postgres fixture, applied normal migrations before Vitest, and passed all 59 cases with the original timeouts unchanged. Its container and data were removed; the failed attempt remains retained. The additional opt-in full Product E2E Vitest run is not green: 5,313 passed, seven failed and three skipped. An actual `abed921e12` archive with the same dependencies, Node and IPC permissions reproduces all seven failures with the same reasons. Five are unchanged workflow-policy/profile-pin assertions, including Pi profile version 37 versus the test pin 35. Two database suites failed during embedded Postgres startup before their assertions; semaphore exhaustion is confirmed in the observer log. The observer passes its supported external-Postgres rerun with original timeouts and source unchanged. The controller-database client-kill/postmaster assertions remain unexecuted after `initdb` bootstrap failure; no external override is supported. The unit launcher stopped before its Node-test phase, which was then run independently and passed 181/181. The original failed full run is preserved. These results remain distinct from the passing focused checks and normal repository CI. The first local Product E2E typecheck also encountered stale compiled Runner declarations; a genuine package-local TypeScript compile refreshed them and the unchanged check passed, without a dependency install or producer rebuild. Earlier [Daytona campaign 41108162900](https://github.com/paperclipai/paperclip/actions/runs/41108162900) failed at sandbox creation before any agent, with the underlying provider error unavailable. Its [sanitized report](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-41108162900-2/index.html) remains a `cleanup_failure`. Both old creation names are absent in the current authenticated account, but the old CI account identity was not retained, so account equivalence is unproven. The subsequent exact `eaef0d5` source Product E2E attempt passed image/agent setup and the initial project, then held the controller offline for 300,003.7 ms. Its Mac supervisor failed owned-process inspection before B readiness; no adoption passed. Full current-company lease/label checks, provider deletion, exact-ID 404s and complete inventory confirmed cleanup of that attempt. Its local server and owned Postgres stopped. The prior AWS campaigns and database qualification VM were terminated with root volumes removed. The old admitted test Runner lacks the newer usage-basis marker introduced on master. The integrated component B turns retained unpriced, incomplete accounting obligations with `costAccountingPending: true` and no settled charge. The compatibility-reader A turn used its legacy receipt interpretation but likewise retained pending accounting and no settlement timestamp. This proves obligation preservation, not a whole-run accounting migration. Runner/receiver release ordering remains governed by the usage owner's contract. At native implementation `abed921e12d543b62f57a56435419c0dafb0bc33`, Greptile was 5/5 with zero unresolved threads and CI completed with 54 successful checks and five expected skips. At `0b6afc499f`, Greptile again passed 5/5 with zero unresolved threads, but CI ended with 51 successful checks, five skips and three failures. Server 9/12 fails a deterministic managed-skills maintenance assertion newly inherited from master `198218bf` in merge `c80e00ad`; that test is absent from the PR head, and the storage owner has the explicit-StorageService fix in #18357. Runner 2/2 passed 2,283 unit cases but its runner received a shutdown signal during the long stream probe; its cancelled step and aggregate failure are preserved. No blind retry was used. Current `af9e2d157d` checks are pending; the matcher-only change passes 144 focused cases and Product E2E typecheck. Earlier scheduling-sensitive CI failures and the interrupted unsharded local test run remain recorded in the dated plan. CI runs the repository's normal test partitions. Final verification does not claim Railway rollout, uninterrupted HTTP service or whole-webserver filesystem loss. </details> ## Risks - The task-pointer repair passes its assembled regression. The first live repair exposed pre-acceptance ordering and the fresh review exposed a replay lock-order issue; both are fixed and pass real Postgres tests at `0862062`. The following live attempt exposed the verified-running-versus-suspended preparation gate. Its narrow fix passes 91 focused cases at `64c0b746`. The next live case exposed synthetic attachment IDs; `7a203274` fixes that field selection and passes real Runner authentication. The subsequent queued continuation exposed strict retirement maintenance and a false default-home change; `39a4343` fixes both with real Runner/Postgres and fingerprint regressions. The `39a4343` live continuation failed again despite green CI. `283e05ffaa` repairs the actual native-observed admission ordering and reproduces/fixes the JSONB skill-order fingerprint drift. Both pass targeted real-Postgres regressions and the live active plus queued paths. The definition 6 post-C browser navigation timed out before admission. Explicit definition 7 now verifies native continuation through the ordinary comment API; its strict post-C native gate failed after a real dispatch and remains historical failed evidence. The final `fc68584` repair now passes its fresh strict 49-check Linux/Daytona campaign; the prior failed grades remain unchanged. Browser reconnection is handed to its own workstream with the original failed evidence. No prior failed campaign is reclassified as passing. - Incorrect checkpoint/source binding or stale ownership could duplicate external work. Missing evidence remains a hold; existing receipt and finalization owners keep uncertain effects unresolved. - Recovery must retain maintenance writes after accepted results without allowing a stale business turn to write. Real lock-wait and generation tests cover that boundary. - The current two-connection paired burst profile fails its absolute drain gate in both baseline and candidate, despite passing relative load gates and all correctness checks. A causal capacity diagnostic selected three slots; the final controlled cap-three profiles pass unchanged thresholds. Full application replacement and two-server overlap capacity remain separate. There is no new streaming writer, pool or recurring idle scan. - The remote sandbox and Runner must survive the recovery window. Provider auto-stop is a separate lifetime bound from reconnect grace; the explicit qualification fixture uses a longer idle window. - Workspace and provider backup availability remain external dependencies. This PR does not certify whole-webserver filesystem loss, uninterrupted HTTP service or a Railway rollout. ## Model Used Implementation and initial verification used OpenAI GPT-6 through Codex; the initial hosted snapshot was not exposed. The follow-up qualification used three OpenAI `gpt-6.1-sol` workers coordinated through Codex, with repository tools, code execution, CI and scoped test infrastructure. Context-window size is not exposed. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused and exact-source application/cost checks pass; full forced CI passes; earlier local embedded-PG setup failures remain recorded) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green (exact `fc68584` full CI and auxiliary checks pass; forced complete test partitions) - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (exact `fc68584` check and edited summary pass; all six threads resolved) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-31 07:33:52 -05:00
DottaandPaperclip	8ff812cdde	feat(chat): deliver proactive task messages to agent chats (#18374 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent Chat gives each person a persistent conversation with each agent. > - Tasks and routines produce results outside that conversation. > - Those runs need a safe way to bring a requested result back to the person. > - The server must select the agent's own chat and check the source task's access rules. > - This pull request adds proactive chat messages and unread indicators. > - People can see the result, open its source task, and reply in the same chat. ## Linked Issues or Issue Description Subsystem affected Server, native runner tools, shared contracts, database, and UI. Problem or motivation An agent can report progress on a task or comment on an authorized task. It cannot send a routine result to its own standing chat with the responsible person. A morning review routine therefore cannot leave a visible digest in that person's chat. Proposed solution Add `send_chat_message({body, idempotencyKey})` and `POST /api/agents/me/chat/messages`. The server selects the company, agent, and responsible person from the active run. It saves an attributed comment and audit record in one transaction. The chat shows a source-task link and per-person unread state. Alternatives considered A destination parameter on a generic comment tool would expose unnecessary routing authority. A new delivery worker would add another durable delivery path. This change uses a dedicated tool and the existing comment and live-event paths. Roadmap alignment This extends the experimental Agent Chat capability in `ROADMAP.md`. The existing `enableAgentChat` setting controls it. Related public work: Refs #13282, Refs #13283, and Refs #14408. Searches for proactive chat and unread chat found no duplicate PR. ## What Changed - Add a focused messaging service shared by the native tool and HTTP route. It checks current run ownership, execution mode, recipient membership, task access, and task privacy. - Reuse the canonical company/agent/person conversation. Save the comment and audit record together. Keep task completion and chat execution separate from delivery. - Add source-task provenance and source-scoped retry keys. Identical retries return the saved receipt. Changed content returns a conflict. - Enforce the conversation's fixed agent at the shared comment-write boundary. Keep normal reply cancellation and session checks. - Add chat unread state, accessible agent dots, aggregate Chat indicators, and visible-message read cutoffs. Refresh through existing live events. - Add the request-key constraint, native tool contracts, documentation, capability maps, stories, and regression coverage. ## Verification - Local delivery/security proof: all 38 proactive-message cases pass. Eight credential-scope regressions and four quota regressions fail against the prior source. The repaired delivery and canonical cross-issue cap suites pass all 49 cases; all 31 OpenAPI tests, server typecheck, and capability-map checks pass. The shared per-run cap covers native and HTTP sends, mixed ordinary mutations, concurrent last-slot contention, and retry/recovery without double charging. - Credential tests preserve the authenticated person and authorizer; reject bridge/test credentials and persisted skill-test runs after task-mode changes; and recheck API-key revocation, scope, and responsible person after destination locking. The earlier delivery/native-authority suites passed all 74 cases before the four quota additions. - Four PostgreSQL contention cases cover native and HTTP sends plus retries during a native chat mutation. All four deadlock against the earlier source and pass with destination-before-source/run locking. Recovery and human-reply delivery enqueue only the human comment; a proactive digest never wakes the chat agent. - Passed 108 companion conversation, native-authority, and OpenAPI tests; 112 runner catalog/workflow-report tests; 47 completion-delivery tests; and 25 project-handoff tests. Focused runner tests cover native tool availability without generic API tools. - All 327 affected UI tests, UI typecheck, token gates, and catalog checks pass. The read hook retries at most three times, respects server retry delay, coalesces only seen cutoffs, recovers on reconnect, and cancels on scope changes. - Real browser journeys with a deterministic process agent verify routine-to-chat delivery, first-chat creation, unread state across reload, the source link, secondary chat navigation, and a follow-up reply referring to the digest. This does not qualify live GitHub retrieval or model output quality. - The Storybook showcase uses production components with deterministic network fixtures. Rendered interactions pass for the landing, ordinary read success, transient read recovery, and persistent failure after bounded retries. Both Chat navigation variants update from two unread chats to one while only Kodi's dot clears. Mobile and light variants were reviewed. The existing Coordinator Recents label contrast finding is unchanged; no Linux visual baseline archive exists. - Current master's independent sandbox migration retains 0418. Regenerated the feature migration as 0419 from the combined schema and retained exactly the newest five snapshots; numbering/safety, replay, and schema-drift checks pass. - Workspace typecheck and build passed before PR preparation; canonical server/UI typechecks passed again on the combined tree. Migration `0419_slippery_impossible_man.sql` passes safety and schema drift checks on disposable PostgreSQL, including interrupted index repair, concurrent migrators, one-time owner read-state backfill, preserved receipts, and two SQL replays. A default five-second local snapshot comparison timed out; a diagnostic 30-second run passed without drift. - Earlier failures are retained in the record: full local `pnpm test:run` and broad shards encountered embedded-PostgreSQL startup, timing, and provider-recovery failures. Thirteen selected external-channel cases pass in isolation on the original and changed sources; an unordered comment-row assertion now explicitly orders both reads. The earlier route registry, native tool count, runner catalog, and accessible Chat badge-name failures were fixed and passed full remote CI on `920b3bb7db`. - Repeated managed-skill server8 failures came from CI's newer synthetic merge: its Cloud guard correctly rejected the old local-disk fixture. Master independently repaired the fixture in #18385; this branch keeps that repair unchanged. All 57 managed-skill and Cloud prerequisite cases pass on the combined tree, and that fixture has no remaining PR diff. - Current reviewed head `dc16f314739a6d977bed21cb1446d0e80a541578`: Greptile 5/5 with no findings, Superagent security assessment passed, advisory Paperclip Review 5/5 with no findings, and zero open review threads. All 55 current-head check runs pass, with five expected skips and the advisory review neutral at 5/5; Snyk also passes. No checks are pending or failing. Protected squash auto-merge is enabled and is waiting for required code-owner approval. A normal exact-head merge was refused by the base-branch policy; no admin bypass was used. The previous head's Superagent quota finding is fixed and covered above. ## Risks - Chat remains company-visible. Delivery rejects a source task with private-task, project, or ancestor restrictions. - Read state uses a comment timestamp cutoff. The server retains database precision and never moves a read receipt backward. - The new unique constraint changes comment query planning. An existing regression now uses an explicit row order. The migration builds the unique index concurrently, then takes a brief table lock to attach it. It uses the existing top-level migration and interrupted-index recovery path. - The upgrade backfills missing chat-owner read-state rows at the latest existing agent comment. Existing read receipts remain intact. New chats can still be unread before the human participates. - Quota observation commits atomically with delivery. A rejected send rolls back its attempted denial audit row and any first-chat creation; the canonical warning remains in server logs, and previously spent quota remains enforced. Identical/conflicting retries and receipt recovery spend no extra slot. - This version delivers in-app only. It adds no external-channel, push, or email delivery. - Local full-suite acceptance remains limited by the failures recorded above. The feature stays behind `enableAgentChat`. ## Model Used OpenAI Codex. PR preparation and CI work used `gpt-6.1-sol` with tool use and code execution. The earlier implementation also used Codex, but its exact model ID was not recorded in the visible session. The context-window size was not provided. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run focused tests locally and they pass; the broad local failures are recorded above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-30 21:39:07 -05:00
DottaandPaperclip	45a3a92e6d	fix(environments): persist sandbox ownership before creation (#18357 ) ## Thinking Path > - Paperclip manages companies and the agents that do their work. > - Remote execution creates provider resources that need a durable owner. > - The server could create a sandbox before it saved its lease. > - A failed lease write could leave cleanup data only on the old web server disk. > - This change saves a company-scoped operation before creation and transfers ownership atomically. > - Recovery finds the original Daytona resource or records an explicit manual reconciliation outcome. ## Linked Issues or Issue Description What happened? A sandbox could exist without a lease after a database failure or company rebind. Failed cleanup recording could then create a local fallback file. Replacing that web server could lose the cleanup reference. Expected behavior A failed admission write makes no provider call. An interrupted creation retains a committed operation. Recovery must not create a second sandbox or destroy an attached lease. Steps to reproduce 1. Run the disposable PostgreSQL cases in `server/src/__tests__/sandbox-creation-operations.test.ts`. 2. Reject the lease insert after the controlled provider creates its resource. 3. Start a new receiver process with a different empty web disk. It must find the same resource and create one cleanup owner. Related ownership report: Refs #14672. This change addresses new allocations before lease persistence. It does not replace existing lease recovery. ## What Changed - Add an idempotent migration and a small creation-operation table. Retain original company, environment and run identities across deletion. - Commit creation intent before run, ad-hoc lease, and plugin task replacement calls. Fence duplicate requests and ambiguous lease commits. - Retain a known returned task resource ID in the existing operation before attachment. Preserve manual reconciliation and never delete an ambiguously attached resource. - Keep company and run authority checks and atomic lease transfer with the lease owner. - Reuse Daytona names, labels, read-only inspection and claimed cleanup. Keep provider payload handling in the provider. - Retain nonsecret credential identity hashes. Refuse recovery lookup under a changed credential value. - Record manual reconciliation for missing/deleted or explicitly inactive saved credentials, versions, and provider vaults. Keep temporary resolution failures retryable. Never reactivate a disabled credential. - Use transaction signals and concrete deadlines. Failed records back off independently. Manual reconciliation stays durable and quiet. - Remove new orphan-file fallback writes from the covered paths. Keep legacy file replay and its tests for cutover. - Replace obsolete fallback-producer assertions with normal-entrypoint durability tests. Keep cleanup, diagnostics and warm handoff coverage. ## Verification - [Independent current-head verification](https://github.com/paperclipai/paperclip/pull/18357#issuecomment-6534744320) passed 190/190 combined tests, 40/40 incoming TestOps tests, full workspace typecheck, and build. PR head `958af986130f25e136065ad30d1fdd843c46255c` has tree `e6c3e5b02182d5941a70ccf5bf55638df3c2e28d`, identical to tested combined commit `b9d7a9c2e9b30f0153685fb24a5f70b56132201f`. Real PostgreSQL, compiled Rust Runner and controlled object providers were used; external-S3 integration remains outside this local proof. - Current head `958af986130f25e136065ad30d1fdd843c46255c` normally merges master `8595efc20bda3ce20a9fbbf34a5d156a6fcf6d57`. The sole conflict was the maintenance test: a parameterized case now preserves both legacy-local `local_storage` and valid shared-S3 `provider_mismatch` checks, including the parent local receipt, exact version identity, missing-snapshot/no-seed refusal, and unchanged persisted row. The three master TestOps files remain intact. No production, schema, migration, or package changes were made after the fully qualified prior head `0b4d05505e`. Independent review approved the resolution; the full managed-skill-content file and Cloud guard controls pass 58/58 (105.11 seconds). [Required PR CI passed on this exact merge head, first attempt](https://github.com/paperclipai/paperclip/actions/runs/41136987412): 54 successful checks and three intended skips. The additional Paperclip review is neutral at 4/5; two external Superagent checks (Contributor trust and Security Scan) remain in progress with zero annotations and no assessment, so they are not passing scan evidence. Greptile reviewed exact head `958af986130f25e136065ad30d1fdd843c46255c` at 5/5; the final thread audit has zero unresolved threads. All completed evidence below retains its recorded revision scope. The additional Paperclip Review on `958af98613` is neutral at 4/5 with a Ship verdict and no must-fix or should-fix item. Its optional observation is that a generic create rejection remains pending/manual even when an operator believes allocation did not occur. This change preserves uncertainty because the generic create-error contract does not prove provider absence; no new error classification or provider-specific compensation was added. - [Independent final-source verification](https://github.com/paperclipai/paperclip/pull/18357#issuecomment-6534328247) passed all 189 real-PostgreSQL/Runner and controlled-fixture cases, full workspace typecheck, and build. The integration commit `c8411a8528386f4824b340ec5fdaaed1efb9ea69` has the same source tree as final PR head `0b4d05505e` (tree `bda65efc14b4c904d0f589154db77bb160641c8c`). Controlled object-provider coverage passed; the separately guarded external-S3 suite was not run because the bounded local MinIO pull was unavailable. This includes the two final compatibility fixes. - The first final-head CI attempt exposed one E2E timing failure in `disconnect-write-recovery.spec.ts:181`: the title stayed unchanged through the 15-second session-recovery poll. The same original case passed in 13.8 seconds on immediately prior head `7ec06f77b7`, and all UI/session/E2E source is identical across those heads. The failure log and CI artifacts are retained; no cause is claimed. One failed-job-only retry is authorized on this evidence, without changing a timeout, assertion, or production behavior. [The single failed-job retry completed successfully](https://github.com/paperclipai/paperclip/actions/runs/41133619710/attempts/2): all 35 E2E shard cases passed (6.6 minutes), including the original session-recovery case in 14.0 seconds. The initial failure remains disclosed and its cause remains unproven. - Final head `0b4d05505ee0aa72f2981cdff74761406960ec73` adds two independently reviewed integration fixes after the complete 7ec CI matrix exposed two deterministic failures. Server 9/12 failed legacy local-storage maintenance because the CLI reached the new Cloud server startup guard; server 5/12 found the Daytona package version did not match its bumped manifest. The failed run is retained at https://github.com/paperclipai/paperclip/actions/runs/41131204203. It is not passing evidence and was not blindly retried. - Maintenance now constructs the existing explicit storage dependency after loading the required persisted Cloud snapshot, and passes it to both maintenance owners. It can verify legacy local storage before provider cutover while normal Cloud server startup remains guarded. The original case reproduced red locally, then the complete managed-skill-content and managed-cloud-prerequisites files passed 57/57 (32.05 seconds), including missing-snapshot refusal, unchanged stored configuration, and existing server guard controls. Daytona package version now matches manifest 0.1.10; the complete bundled package identity file passed 14/14 (3.98 seconds), and explicit manifest/lifecycle controls passed 2/2 (328 intentionally filtered; 3.42 seconds). An initial workspace-filter command matched no project and is not counted as pass evidence. The final diff changes no sandbox runtime or schema behavior. [Full CI is green on this exact final head](https://github.com/paperclipai/paperclip/actions/runs/41133619710/attempts/2): 56 successful checks, three intended skips, one additional incomplete/neutral Paperclip Review, and no pending or failed checks. The neutral review is not a passing assessment. [Greptile reviewed the exact final head at 5/5](https://github.com/paperclipai/paperclip/pull/18357#issuecomment-6529396969), with no new actionable issues and all review threads resolved. - Final combined head `7ec06f77b7c14a745c569d18401f16df3d26b626` includes master managed-skills migration 0417 and shared-storage prerequisites from `198218bf55` through normal merges. Sandbox creation moves to generated `0418_curved_lady_mastermind.sql`; its idempotent SQL is byte-for-byte unchanged. The regenerated 0418 snapshot contains both sandbox creation operations and the master skill mutation receipts, and points to the master 0417 snapshot. Master SQL and journal history remain intact. Exactly five snapshots remain, 0414 through 0418. The only sandbox-specific changes since the approved credential policy are migration metadata/number and the matching test/document references; the sandbox runtime files are unchanged. - [Independent final combined verification](https://github.com/paperclipai/paperclip/pull/18357#issuecomment-6533960026) passed on integration revision `e6f05b4cf0cd`, containing final sandbox head `7ec06f77b7` and actual master `198218bf55`: migration/declaration checks, all 158 real-PostgreSQL/Runner and controlled-fixture cases (251 seconds), full workspace typecheck (81 seconds), and build (35 seconds). - Final combined migration proof: fresh real PostgreSQL has both tables. A separate original-0417 sandbox table with a retained pending row survives two applications of the renamed 0418 SQL unchanged, with the expected primary/index and foreign-key structure. Migration numbering/safety checks pass. The normal runtime migration reapply case passes 1/1 (20 intentionally filtered cases; 46.69 seconds). The first temporary qualification harness stopped before any database assertion because its external `.ts` file selected CommonJS; the `.mts` harness corrected that setup and passed. Independent review approved the exact metadata and reference diff. Earlier full suite and live-provider results below retain their stated revision scope. - Credential-policy head `c606d473b03709f27577a55a1dfc0b0d3b4359fd` handles the remaining inactive-credential review warning. The existing boundary accepts only concrete secret-owner 422 codes and exact no-details disabled/coming-soon vault messages. Unknown 422, authorization errors, provider wrappers, and temporary database/provider failures still propagate. Independent source review approved this three-file correction. No generic resolver, schema, provider protocol, retry cap, or activation behavior changed. - Creation/cleanup qualification at `c606d473b0`: all 39 cases pass against real PostgreSQL (81.27 seconds). The new cases use actual disabled/archived saved secrets, a valid disabled version, and provider vaults created ready before normal API updates disable them or mark them coming soon. Each remains manual through restart/repeated scans, with zero provider lookup and no retry deadline. The independent plugin idle blocker remains intact. The temporary 503 control retains retry ownership and later recovers one cleanup owner. Before this correction, all five inactive-state cases remained pending; that failed evidence is retained. The prior 18-case known-ID task proof below belongs to `237144fcf6`, whose helper and task path are unchanged by this correction. - Known-ID head `237144fcf69a249c0e0310563428c0f55ed6d55c` also addresses the independent task-replacement reliability warning. The existing creation operation now saves only the known nonsecret returned resource ID before expiry validation and attachment. The write is scoped to operation/company/original environment and allows only a missing or matching ID. It changes no ownership state and copies no resolved configuration, credentials, or provider payload. Independent source review approved this four-file fix. - The complete real-PostgreSQL task suite passes 18/18 (9.52 seconds). Rejected attachments retain the ID through manual reconciliation and repeated scans. A real committed attachment followed by an injected lost response retains the same active lease and attached operation, with no release or second create. Same-ID retries work; conflicting IDs and foreign companies cannot change it. The initial three regression cases failed because the ID was absent, before the fix. - The shipped Daytona manifest does not declare task support, so it cannot enter this generic replacement path. The dispatcher requires both declared task support and an environmentTask worker method. Generic drivers without creation lookup still use manual reconciliation, with a known returned ID retained when the database write can commit. No automatic lookup capability or unconditional compensation was added. - Previous boundary-fix head `8ba77def151ea85eeae2db7693254db7f87673b0` fixes the fresh review finding about missing credentials. Only known secret-owner 404 results at the recovery secret-resolution boundary select the existing manual outcome. Provider inspection and transient database/provider errors remain retryable. Independent source review approved this change. - Secret-boundary focused acceptance at `8ba77def15`: all 34 cases pass against isolated real PostgreSQL. The complete creation suite passes 16/16 (100.75 seconds); the complete cleanup coordinator suite passes 18/18 (99.83 seconds). The new cases use normal saved-secret creation and deletion, confirm zero provider lookup, restart/repeated scans, no automatic deadline, preserved independent plugin idle blocking, and no additional idle blocker after the controlled worker supplies its quiet proof. A temporary 503 resolution failure preserves pending ownership and later recovers one cleanup owner. No additional live provider resource was created. - Failed attempts remain part of the evidence. The initial red run reproduced the pending-operation bug and also exposed a numeric-deadline test harness mistake, which was corrected. A later combined run reported an existing replacement-receiver failure and a new idle-fixture assertion failure; it was interrupted while the next test file remained in imports. An isolated diagnostic confirmed that the manual state was correct but the installed fixture plugin correctly blocked sleep without its independent quiet proof. The corrected test retains that blocker assertion before supplying the controlled worker witness. The unchanged replacement-receiver case passes in the final complete 16-case run; its earlier failure is not counted as a pass or assigned a proven cause. No timeout or production idle guard was relaxed. - Greptile reviewed previous combined head `7ec06f77b7c14a745c569d18401f16df3d26b626` at 5/5, with no unresolved review threads. Its CI produced the two concrete integration failures addressed above. The earlier CI and live evidence below remain historical evidence, not a claim that the current full gates have completed. - Master integration update: merged `dbff3747b8` and then latest master `76fde891cc` without rewriting branch history. Only `doc/DATABASE.md` conflicted; the sandbox ownership, object-backed run evidence, and cloud configuration sections all remain. The master merges changed no sandbox implementation, migration, or provider code. Migration numbering/safety checks pass and exactly five schema snapshots remain. At merge head `f5d23d4a59828835d01c150f83fa2645fb2d3bec`, the two focused creation/coordinator suites pass all 32 cases against isolated real PostgreSQL (64.57 seconds). Those merge-head checks precede the missing-credential fix below. The earlier live Daytona proof still covers the unchanged normal creation/lookup/teardown path; the new missing-credential branch is qualified with real PostgreSQL and controlled provider hooks. The optional Superagent Security Scan was inconclusive on prior head `7ec06f77b7`: its pinned PR merge-base checkout failed or timed out, with a neutral conclusion and zero annotations. An earlier scan could not start within 120 seconds; a bounded rerun request returned HTTP 404. These scanner failures are not passing security-scan evidence. On final head `0b4d05505e`, the additional Paperclip Review check is neutral: its assigned review execution did not complete and produced no validated assessment. Fresh Greptile 5/5 and independent source review are separate evidence. Previous-head required CI, independent review, and the live Daytona qualification below passed. - [Complete previous-head CI](https://github.com/paperclipai/paperclip/actions/runs/41105726052) passed at `0b5cbb763ab8faa25aa0ff1d8a405cdc0d3db409`: 53 successful checks and three intended skips, including typecheck, full tests, build and E2E. Greptile is 5/5 on this head and both original findings are resolved. - Initial head: 200 PostgreSQL runtime, creation and coordinator tests passed. The corrected head also passes all 32 creation and coordinator tests, including deletion before/during lookup, a failed lookup after deletion, restart, settled polling and actual idle-safety checks. Cases cover failed admission, failed lease writes, concurrent recovery, lost provider replies, ambiguous transfer retries, company rebind, environment deletion, stopped runs, lookup backoff, restart, drain and settled SQL quiet. - Separate receiver processes: passed. A controlled HTTP provider retains the resource while three independent receiver processes use two empty web disks. Recovery creates one cleanup owner and never repeats creation. - Fresh PostgreSQL migration and two additional applications: passed. The pending creation row survives unchanged. - Server TypeScript and SDK/shared build checks pass after the corrections. Migration numbering/safety checks passed. Exactly five schema snapshots remain. - Daytona adapter: all 330 tests passed, including stable-name lookup, ownership checks, deletion and the updated manifest version. An earlier run exposed the version expectation and it was corrected. Previous-head CI passed. - Live Daytona acceptance passed on `0b5cbb763a`: isolated real PostgreSQL, normal runtime acquisition through independent receiver processes, actual Daytona plugin/SDK 0.203.0, one disposable Ubuntu 24.04 sandbox (1 CPU / 1 GiB RAM / 1 GiB disk). A forced lease insert failure retained the committed operation; a fresh receiver with empty disk found the same sandbox, repeated recovery retained one cleanup owner, and the actual claimed cleanup sweep expired the lease and resolved the operation. Independent SDK lookup returned typed not-found; ordinary recorded-ID inspection returned destroyed. This successful attempt made one create, one recovery lookup, and one teardown. Two earlier failed harness/provider-confirmation attempts are disclosed in the [live acceptance record](https://github.com/paperclipai/paperclip/pull/18357#issuecomment-6530313054). The coordinator independently queried all three exact resource IDs through the SDK and confirmed typed not-found for each. - Complete CI-affected heartbeat/plugin warm-task suites passed 21/21 after test corrections. An unchanged workspace exposure case passed in isolation after the prior CI shard reported an unhandled readiness rejection. Complete previous-head CI and refreshed review passed. ## Risks - Deleted companies retain an explicit manual reconciliation outcome. Recovery does not retry missing credentials or insert a lease for a deleted company. - Only Daytona declares automatic creation lookup. Other uncertain providers retain `needs_reconciliation`. A missing creation name alone cannot prove that a late allocation will never appear. - Pending operations use the existing process-local signal and startup recovery model. This does not add cross-replica wake delivery or prove deployed sleep. - Legacy direct provider probes and custom-image setup use separate lifecycles. They are outside this replacement of the run-lease orphan-file fallback. The normal Test path that acquires a runtime lease is covered. - Existing orphan files still require the separate cutover inventory and settlement. This change does not delete them. - The schema change is additive. The new SQL can be reapplied. Historical SQL and journal entries are preserved; only the oldest generated snapshot is pruned. ## Model Used OpenAI `gpt-6.1-sol`, with tool use, code execution and repository review. The harness did not report the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge The required branch status checks (`ci / verify`, `ci / e2e`) and all test/build jobs passed on this head. The non-required Superagent Contributor trust and Security Scan checks are still running without findings; they are not claimed as passes. No required check or branch rule is overridden. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-30 17:38:23 -05:00
DottaandPaperclip	0e15c92073	feat(skills): make managed content independent of web-server disk (#18334 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use installed skills and exact version pins during execution. > - Managed skills still depended on mutable directories on the web server. > - A replacement server could lose acknowledged edits or remove an unassigned skill whose directory was absent. > - This pull request makes immutable versions the authority for managed content and installed repository reads. > - The server can rebuild delivery files from durable content after replacement. > - This establishes skills readiness for ephemeral web servers. General server draining and workspace recovery remain separate work. ## Linked Issues or Issue Description Subsystem affected Skills services, shared contracts, database receipts, Skill Studio, and runtime delivery. Problem or motivation A fresh web server must discover, read, edit, and deliver protected installed skills using the same database, object storage, secrets, and supported application artifacts. It must not need its predecessor's files or process memory. Proposed solution Use `managed` ownership with a null source locator. Read installed content by immutable version. Prepare packages before a short publication transaction. Persist execution selections before materialization. Recover exact pinned runtime assets and reject deletion while active or recovering pins exist. Alternatives considered Reconstructing a mutable installed directory preserves the old source-of-truth ambiguity. Permanent dual writes create two competing authorities. This change uses one managed model after a bounded legacy conversion. Roadmap alignment This improves the existing Skills Manager, Studio, version history, and Cloud execution capabilities. The maintainer supplied the implementation contract. This does not add a separate skills product or deploy fleet changes. Related work: #18082 supplies immutable package storage. #17273 addresses edits outside the API for linked local skills; this PR keeps that source category separate. #2648 is a closed earlier ephemeral-filesystem proposal. ## What Changed - Add managed ownership and focused content publication and execution materialization modules. Keep the archive format and package storage tables. - Publish managed create, save, delete, fork, rename, restore, and catalog content with version checks. Add durable create receipts. Preserve file-save receipt responses. - Return file version identities. Keep Studio drafts after a conflict and provide an explicit reload action. A delayed reload cannot overwrite newer typing or navigation. - Persist exact runtime selections, including empty selections. Rebuild pinned assets and verify their admitted digests on a replacement server. - Preserve source access on forks and disconnected copies. Keep the existing workspace policy category for managed skills. - Add bounded conversion, eligibility, and independent verification phases. Load persisted Cloud configuration in the standalone CLI without seeding or changing it. Reject partial current versions against installed inventories; recover only complete saved content or the exact source. Document storage migration blockers and the compatible rollback floor. - Add separate-process PostgreSQL/S3 qualification and update domain, retention, policy, and UI regressions. - Pass the plugin worker manager into Studio execution, admit restricted `skill_test` mode through native Runner contracts, and preserve admitted scope across native and REST tools. Native tests cannot create ordinary tasks, browse company data, or use external tools. - Select the exact durable Studio revision even when unassigned or Beta skills is off. Persist Studio output and audit atomically with native task completion, preserving the result on replay. ## Verification - Final revision `13e8af480b88ba6fea5737bac4bd81104d604792` passed full CI: all 49 workflow jobs completed successfully ([run 41127396098](https://github.com/paperclipai/paperclip/actions/runs/41127396098)). This includes typecheck, test suites, Runner checks, browser checks and build. Greptile review 15 is 5/5 on that same revision, with zero unresolved threads. The PR is ready for review. - Local workspace typecheck and build passed after integrating master. Focused checks passed: 33 execution/completion cases, 52 Runner HTTP cases, 16 managed-content cases, 17 Studio cases, the new real-process CLI regression, map checks and UI token gates. The CLI regression proves inspection does not seed missing Cloud configuration. Server typecheck passed after that fix. - The independent-process PostgreSQL/S3 matrix passed through normal HTTP skill routes. It covers A → B → C replacement, lost commit responses, upload crashes, concurrent saves, binary contents and executable delivery. Metadata listing and warm selected delivery retain zero object downloads. Local timing measurements are recorded; they do not establish hosted latency. - Hosted A → B → C passed on the owned disposable test tenant with external Postgres, S3 and a real remote Paperclip Computer. Predecessor temporary homes were absent. C read and executed B's acknowledged managed save. New runs used repository v1 while v2 was installed. Hashes matched an independently checked exact upstream commit. - Compatible image rollback to `6518b323` passed. Studio retained the unassigned fork's C save. A fresh remote run executed the newer managed content and historical repository pin. The actual shell event confirmed expected hashes, stdout, exit 0 and mode 0555. - Runtime candidate `9200e3fcb4` deployed successfully ([Cloud run 41124147876](https://github.com/paperclipai/paperclip-cloud/actions/runs/41124147876)). The final Studio test delivered only the unassigned fork's exact v3, executed its script and persisted a successful output snapshot. Independent command-event inspection confirmed all three hashes, stdout, exit 0 and mode 0555. All 14 installations were version-backed. Independent verification checked all 25 versions: 23 remote objects, two bundled database snapshots, zero blockers. - The deployed image is `9200e3fcb4`. Later master integration, the client-only delayed-reload draft guard and the CLI bootstrap have separate automated proof. The CLI bootstrap was also exercised against the tenant's stored configuration and storage through the same read-only services. This PR does not claim that the deployed image is the final PR revision. - Live Studio checks exposed worker wiring, admission, access scope, exact selection and completion-publication gaps. They are fixed. Failed attempts remain in the evidence. The full local suite exceeded 80 minutes under host contention and was stopped. Later combined/isolated local attempts also timed out; they are not counted as passes. Full CI covers the integrated suites. Earlier CI found an obsolete restart-scope fixture, which was corrected and passed all 52 HTTP cases. - Reproduction and migration: [`doc/skill-ephemeral-web-servers.md`](doc/skill-ephemeral-web-servers.md). Source revisions, deployments, versions, run IDs, hashes and failure history: [`doc/plans/2026-10-30-ephemeral-web-skills.md`](doc/plans/2026-10-30-ephemeral-web-skills.md). ## Risks - Legacy conversion requires stopped admission and retired filesystem-authoritative writers. Pre-conversion binaries are not supported rollback targets afterward. - Cloud readiness requires remote object storage. Local provider receipts and provider mismatches remain blockers until objects are copied and verified. - Linked local sources retain filesystem semantics and are outside the cloud guarantee. - Cold reads still fetch the existing archive format. Warm runtime preparation retains the verified-cache path. - Bundled reconciliation preserves an installed head. Existing release snapshots remain selectable. An older server must not replace a newer head with its shipped files. - No production volumes, fleet defaults, or general deployment coordination change in this PR. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser use. The exact backend model ID and context-window size are not exposed in this session. No subagents were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-30 16:18:27 -05:00
DottaandPaperclip	ed8fae8dbb	fix(workspaces): preserve completed shallow sandbox exports (#18221 ) ## Thinking Path > - Paperclip coordinates agent work and preserves its results. > - Remote execution copies completed workspace changes back to the host. > - An agent can fetch a published branch with shallow Git history. > - A full Git bundle omits the shallow boundary metadata and can fail host connectivity checks. > - This pull request carries the boundaries through the full-bundle fallback and imports through normal Git fetch. > - Recovery must also recognize completed native work on a reusable lease without treating it as ordinary executor reuse. > - Completed work can be saved without another provider turn, while existing host history remains connected. ## Linked Issues or Issue Description What happened? Sandbox finalization can fail with a missing parent commit after an agent checks out a separately fetched shallow branch. Re-exporting a full bundle repeats the failure because Git bundles do not encode shallow boundaries. Expected behavior Import the completed branch and saved files. Preserve existing host ancestry and concurrent host edits. Keep normal Git connectivity and workspace merge checks. Steps to reproduce 1. Prepare a sandbox from one host commit. 2. Fetch a different published branch with depth one and check it out. 3. Save a result file and restore the sandbox workspace. Paperclip version or commit Reproduced against master before this repair. The regression fails with the missing-parent error before the production change. Related public context: #15268 covers rewritten history integration. This repair handles shallow bundle transport before integration. Searches found no equivalent open repair. ## What Changed - Export shallow boundaries beside the full bundle when the delta import lacks history. - Unpack into a temporary shared bare repository. Keep parent connections already available on the host and import with Git's shallow fetch protocol. - Reject malformed boundary values and retain existing connectivity, branch, and concurrent-work merge guards. Keep boundary probes within 15 seconds without consuming the separate 60-second Git import budget. - Let source-bound preservation recover reusable leases only for the finalizer-selected, accepted successful native result and matching completion contract. Retain provider-stop, physical ownership and host-writer checks; ordinary reusable sources remain blocked. - Classify invalid Git metadata separately from omittable unsafe archives. Keep native finalization failed and preserve service-owned file recovery; carry the sender's dedicated rejection across the command boundary without transient retries. - Share the failure allowlist across bounded run/activity projections and cancelled-preservation selection. Migration `0416` rebuilds the matching partial index; task chat retains the non-retryable recovery notice. - Add real Git, filesystem sandbox and database recovery regressions. Update execution semantics and affected verification maps. ## Verification - Red: real filesystem sandbox restore failed with the same missing-parent/revision-walk error before the export repair. - Green: 240 focused Git, workspace restore, sandbox transport and native-finalization tests pass. Coverage includes both transfer paths, malformed/oversized metadata, a genuinely shallow host with its original boundary intact, and concurrent host work with both merge parents verified. - Red/green: a 14-second simulated probe left the final real Git fetch only 45,893 ms before the budget split. It now retains over 55 seconds after the probes; a 16-second probe exhausts its own budget before host import. - Red/green: an oversized read progress report was retried three times before its distinct metadata classification. It now aborts the first read before payload consumption, leaves the host tip unchanged and does not retry. - Red/green: the real metadata error was swallowed by best-effort export and native finalization incorrectly returned success. Both regressions now pass; all 240 focused Git/restore/native-finalization tests pass. A PostgreSQL/filesystem fault-injection test also verifies retained files, failed run, service-owned recovery barrier, no preservation receipt and no new wake. - Red/green: duplicate metadata produced 47 Git process starts before deduplication; the bounded-work regression now passes. Oversized byte and boundary inputs fail before Git probes. - Recovery red: both reusable lease policies exhausted recovery despite a selected accepted successful result. The assembled PostgreSQL/filesystem path now passes for retained and both reusable policies, including idempotent re-admission after exhausted automatic recovery, saved files, no agent wake, and once-only existing-result finalization. - Source verification controls reject ordinary reusable leases, rejected/failed/unselected results, another physical allocation owner, and an active host writer without changing recorded state. - The 78-test PostgreSQL/filesystem recovery/source suite passed before the metadata classification correction. Its new persisted metadata-failure regression also passes. Full workspace typecheck and build pass at final head `69f10daab2`. - `node scripts/check-maps.mjs` and `git diff --check` pass. - Full local `pnpm test:run` attempts did not finish. They are not counted as passes. Early focused runs exceeded 5-second and 30-second fixture deadlines; the final serial suite passed all 176 tests with a 30-second per-test budget in 56.8 seconds. - Red/green: both bounded PostgreSQL projections dropped the new code in oversized results. All 19 source/projection cases now pass, plus an actual index-predicate test that excludes a metadata repair hold and still selects ordinary cancelled work. - Red/green: an oversized sender `.git/shallow` lost its error type before host validation. The real transport test now verifies one typed rejection, no shallow-payload read, and an unchanged host tip. All 465 command/sandbox/task-chat tests pass, and token/migration gates pass. - Full typecheck/build pass after these final contract corrections at `69f10daab2`; all 20 PostgreSQL source/projection/index contracts pass. All current-head CI checks passed; Greptile is 5/5 with no unresolved review threads. Merged #18230 supplies the CI-cache and Linux shell-fixture baseline repairs; their duplicate changes have been removed from this PR. The final Runner lane passed after one justified rerun of an unchanged authentication fixture timeout (all 11 fixture tests also pass locally). Previous CI failures and incomplete local runs remain recorded; live deployment and retained-run recovery remain separate verification. ## Risks - The fallback creates a temporary shared bare clone. Metadata is limited to 64 KiB and 256 unique boundaries, duplicate/parent probes are cached, and Git import has a 60-second command budget plus a separate 15-second boundary-probe budget. It runs only after a missing-history import failure. - Incorrect boundaries could hide real host ancestry. The importer retains available parent connections, and regressions cover that case. - The full-bundle fallback can transfer a bundle twice. This preserves the existing fast delta path; removing that extra transfer is outside this correctness repair. - Preservation eligibility expands only for completed native exports on reusable leases. It creates no provider turn and leaves ordinary reusable leases ineligible. Database/filesystem regressions cover result selection and competing physical/host ownership. - The migration rebuilds one partial index; no tables, columns or user records change. There are no agent execution admission, model, trust, recovery permission, workflow or lockfile changes. ## Model Used OpenAI Codex, GPT-6, with reasoning, code execution, and browser tools. The exact serving variant and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 20:02:53 -05:00
DottaandPaperclip	f1911a4c53	perf(skills): move repository packages out of Postgres (#18082 ) <!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/205/changes/paperclip/205 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents receive selected company skills before each turn. > - Imported skills can need files from the whole source repository. > - The current path stores those files in Postgres and reads large JSON payloads during preparation. > - This pull request stores verified packages in the configured file or object store and keeps preparation queries small. > - It also converts old rows automatically and restores missing files from the exact saved commit. > - The result reduces database traffic while preserving skill versions and repository dependencies. ## Linked Issues or Issue Description What existing behavior does this improve? Company skill import, version storage, and preparation before agent turns. Current behavior Repository snapshot bodies live in JSONB. Skill preparation can read those bodies again even when the files already exist on disk. Historical packages and native assets also need a bounded cleanup path. Proposed behavior Store package archives and manifests through the existing storage service. Keep version identities, receipts, hashes, and recovery metadata in Postgres. Convert legacy rows after the stored package passes read-back verification. A missing package can use legacy bytes or its exact Git commit under current repository authorization. No separate data-migration command is required. Reason and benefit The warm path sends no repository bodies through SQL and reads no object bytes. Cleanup runs through the existing deadline coordinator. Current versions, active runs, explicit pins, and authored content retain their protection. Breaking changes The normal application schema upgrade is required. Single-version and skill-file responses keep their existing shape. Version lists, current-version summaries, and test-run version summaries now contain file names and kinds without file bodies. Diff and restore fetch selected versions through the existing single-version endpoint. Older server builds must not write after conversion unless they support the new package format. The storage override and rollback limits are documented in `doc/skill-package-storage.md`. Additional context Related work: #15731 preserves repository dependencies; #17923 changes version-cache scheduling; #18080 changes delivery to remote Codex homes. This change owns package persistence, acquisition, and expiry. It does not replace those delivery or scheduler changes. ## What Changed - Add company-scoped archive receipts, exact-commit recovery recipes, migration deadlines, and a durable object-deletion queue. - Add bounded archive upload, read-back verification, extraction, concurrent request coalescing, and verified local caches. - Convert old snapshots and versions automatically. Keep legacy bytes when verification fails. - Recover missing files through current source authorization and the original commit. Validate repository identity, file hashes, modes, and the aggregate hash. - Expire unused recoverable Git packages and native assets after 30 days. Preserve active pins and the durable copy of authored or unproven content. - Keep warm preparation queries metadata-only. Bound file digest caches and avoid repeated body hashing when file identities are unchanged. - Extend the existing storage contract with cancellation. Register package work with the existing coordinator. Optional conversion retries retain the original bytes and may wait for ingress without blocking sleep. - Add regression tests, operating guidance, a deep trace, benchmark receipts, and an optional maintenance command. ## Verification ### Final master integration and review repair — October 29, 2026 Current head: `a6065424249e763dfeac37161f1b52a9f25bd9b7`. Commit `f8bbdd3dbd` resolves the conflicts with master `76a796e964`; the final two commits repair the Apex deletion findings below. - Keep both package-maintenance and version-retention notifications in their write transactions. - Keep the shared run-pin predicate and master's controller-lease deadline metadata. Package expiry reads the updated protected-version result. - Preserve every master migration entry. Generate migration 0415 (`0415_zippy_zemo.sql`) after master's 0414. Its skill SQL is byte-for-byte unchanged from the previously tested idempotent migration. Retain only the five newest schema snapshots. Migration numbering and safety checks pass. - Repair failed file/folder deletion: preserve a complete temporary subtree until transaction commit, restore on upload or SQL failure, and restore callback failures before releasing the mutation lock. Both PostgreSQL regressions reproduced missing files before the fix and now pass. They cover binary data, executable permissions, empty folders, unlisted files, unchanged database/version rows, successful retry after upload-claim expiry, and historical reads. - Reconcile lost commit replies under the same advisory and row locks. Check the saved version and source identity before restoring. Keep committed deletions intact and preserve backups when the database outcome is unknown or a newer edit exists. Four real-PostgreSQL outcome tests pass; the prior code failed three of them. - Full workspace typecheck and production build pass on the final commit. All 204 focused PostgreSQL package/cache/retention/authoring and filesystem-boundary tests pass, with none skipped. - Apex review 18 passes 5/5, with zero new comments on the exact final head. All 34 review conversations are resolved. - [Final-head CI](https://github.com/paperclipai/paperclip/actions/runs/40914116508) completes successfully on attempt 2. The head has 55 successful checks, two neutral reports, two skipped checks, and a successful Snyk status. No checks are pending or failing. All eight browser shards pass. - Runner Vitest 2/2 timed out once in the unchanged ACPX controller-replacement fixture. The same job passed on the preceding commit. One unchanged CI retry passes all five ACPX recovery cases, 2,253 Runner package cases and 126 native server integration cases; their standard one and five skips remain. The initial timeout's root cause is not established. Local diagnosis also hit the fixture's eight-second session.open timeout with an authenticated Runner; no local Runner pass is claimed. - Both full local `pnpm test:run` attempts were stopped when Apex identified deletion defects and source repair became necessary; neither is claimed as a passing full local run. The final 204 focused tests, full workspace typecheck, and production build pass. Full-suite acceptance uses the final-head CI jobs. The superseded merge-head CI included runners terminated by shutdown signals; each source repair started a new full run. - Auto-merge is enabled for squash merge. The final head is conflict-free and all checks pass. GitHub's active master ruleset still requires a code-owner approval for the dependency files. The existing review requests are with `devinfoley`, `nickyleach`, and `forgottendev`; no policy bypass was used. - The earlier hosted stress and full native receipts below remain tied to `a2e597d800`; they are not relabeled as a deployment of this final integration. The earlier local PostgreSQL startup failure remains recorded below; PostgreSQL ran successfully for this integration verification. ### Full native skill execution — October 29, 2026 The full native-agent acceptance gap is closed on candidate `a2e597d800eb989d565780e7aa947d5368676444`. Two qualifying native turns used OpenAI API / `gpt-5.4-mini` in real Daytona sandboxes, on the same disposable hosted TEST tenant as the stress test. A follow-up on the same task consumed a newly saved skill version. The task text asked for the assigned skill workflow. It did not contain the proof nonce or expected receipt. The assigned authored skill contained a Python verifier and a random package-local nonce. The agent read the actual installed skill files and executed that verifier against the imported, automatically converted 1,360-file repository package. It checked the repository file count and reference/binary bytes, and directly executed the repository's executable probe. Independent verification matched the emitted JSON to the nonce and expected byte hashes. The agent persisted the same receipt as its task response; native finalization committed, workspace finalization succeeded, and task state became Done. \| Qualifying turn \| End-to-end run time \| Recorded skills.prepare \| Repository files \| Binary hex \| Shell receipt SHA-256 \| \|---\|---:\|---:\|---:\|---\|---\| \| Initial task \| 47.881 s \| 1822 ms \| 1360 \| `00ff07800a` \| `a1deb30dc095f2306c7aa9cc5ec396da12c68961cf5b809f4d7c20f7fc68493b` \| \| Corrected follow-up, new nonce/version \| 37.974 s \| 377 ms \| 1360 \| `00ff07800a` \| `dbcdc33fa1376b4edc136feae1cdf770560a73292467e93619efdda20e4282a7` \| Both successful shell receipts reported `probe: STRESS18082` and `assetSha256: e8ea7a2f15f7bb3b332a46adbef848465884c8996595aa234748befd544d1f3a`. Their proof nonces, selected version IDs and receipt hashes differed, and both ran on the same task. These are observed timings, not latency SLOs; they include real provider work. The service stress-test timings remain a separate measurement boundary. Earlier failures remain in the evidence: - The original five-minute Daytona allocation timeout never reached model execution. After normal owned-stack restore, its durable cleanup record was `expired` / `success`. The cause of that original allocation timeout remains unknown; a later success establishes recovery only. - Initial continuation setup used unsupported generic agent-update fields and returned HTTP 409 before dispatch. Setup was corrected to use the supported skill-assignment and versioned instruction commands. - The intervening completed native turn read repository bytes and ran the probe, but omitted the verifier JSON under the older test agent's overly-specific instruction file. Its strict receipt validator failed; it is not counted as a qualifying turn. Correcting the test agent's instruction file and sending an explicit task-scoped wake produced the qualifying follow-up above. - The pinned application's immutable rate card omits `gpt-5.4-mini`, so completed usage triggered the normal block-on-unpriced budget policy. Supported append-only accounting corrections estimated the three completed runs using the [official OpenAI model rate card](https://developers.openai.com/api/docs/models/gpt-5.4-mini): $0.75 input, $0.075 cached input, $4.50 output per million tokens, assuming standard processing. Estimates totaled 12.482655 cents. Original usage and missing-price records are preserved; the $1 hard stop and unpriced-usage guard stayed active. - Model shell attempts included a missing `xxd` command and incorrect guessed file paths. Those failed calls and subsequent successful actual verifier calls remain visible in complete event streams. No zero-tool-error claim is made. No product source changed during this continuation. The previously measured contention, cold-start and memory limits remain. The later merge resolution is covered by the separate integration checks above; these hosted receipts qualify their recorded candidate. ### Hosted stress test — October 29, 2026 Hosted acceptance: full native-agent execution and a changed-skill follow-up pass on the recorded hosted candidate. The final integration section above records the subsequent conflict resolution and its separate checks. Tested baseline `929e840595c8933ca485ac7a2e99413e1e11ca64` and this exact candidate sequentially on one disposable TEST tenant, with external Neon PostgreSQL and actual S3. The fixture contained 1,360 files / 22.4 MB / ten skills sharing one repository. Measurements cover deployed skill-preparation and native-context services in an adjacent diagnostic process, not a complete agent turn. The container had 24 vCPU / 24 GB. \| Warm workload \| Median before → after \| p95 before → after \| DB returned value bytes/preparation before → after \| \|---\|---:\|---:\|---:\| \| One skill, serial \| 1,060 → 125 ms \| 1,303 → 155 ms \| 22,610,389 → 1,771 \| \| One skill, four concurrent \| 4,415 → 297 ms \| 5,143 → 328 ms \| 22,610,389 → 1,771 \| \| Ten skills, serial \| 5,723 → 535 ms \| 6,057 → 600 ms \| 224,739,030 → 10,671 \| \| Ten skills, four concurrent \| 24,410 → 1,986 ms \| 24,833 → 2,221 ms \| 224,739,030 → 10,671 \| - Candidate warm preparation performed zero S3 GETs. Ordinary-pool queries fell from 16 to 9 for one skill and 61 to 9 for ten, excluding dedicated lock connections. DB numbers measure returned values before Drizzle decoding, not wire bytes. Baseline/candidate sample counts were 30/100, 32/100, 5/50 and 8/48 respectively; the small baseline ten-skill samples are comparative evidence, not SLO estimates. - Application-UID soak: 800 ten-skill preparations over 10.3 minutes, four workers paced by 2.5 seconds; zero failures, median 559 ms, p95 775 ms, p99 910 ms, zero warm S3 reads. All 726 accompanying health/company-list requests returned HTTP 200. Their end-to-end p95 was 569/502 ms, including network latency. The probe overlaps most of the soak. Soak DB-response capture was limited to its first 60 seconds. - Important remaining costs: an unpaced 16-way ten-skill burst had p95 8.32 seconds because company-level preparation serializes. Cold preparation took approximately 1.1–2.5 seconds for one skill and 7.4–10.0 seconds for ten. Ten-skill diagnostic RSS remained about 1.17 GiB (baseline 1.18 GiB), and the soak peaked at 1.35 GiB. A concurrent whole-container sample was 3.45 GB. This does not establish suitability for a small-memory host or eliminate per-entrypoint native asset duplication. - Upgrade without a manual data migration passed: legacy snapshot JSON shrank from 22,465,691 bytes to `[]`, with a stored package and zero pending conversions. - Recovery passed: sixteen concurrent cold requests coalesced into two S3 GETs; full bytes/binary/executable modes matched; same-size corruption repaired; an injected storage failure preserved warm access and failed cold access safely. A disabled public-Git source denied recovery, and after the actual five-minute backoff its exact SHA reconstructed all 229 files. Cross-company descriptor access was denied. Private-Git credential revocation was not tested. - Retention passed: reclaimed 27,754,496 allocated cache bytes, deleted an unreferenced package row and both objects, preserved aged authored history, and expired/reacquired reconstructible Git content. A version pinned by the failed native run was correctly retained. Only owned fixture timestamps were aged. - Browser UI passed: authored skill creation, saved edit surviving reload, version history, and restoration of earlier content. - Initial native attempt (superseded by the qualifying turns above): one real run failed at Daytona allocation after five minutes (`setup_failed`), before any model execution. Provider cleanup also reported failure. That attempt does not count as a passing native turn. Its receipt and all evidence remain preserved; its cleanup later recorded success after normal restoration. - Initial A/B commands ran as SSH root. Diagnostic-owned lock/cache permissions caused one setup HTTP 500 and the first UID-1000 soak to fail; exact fixture paths were repaired. The final soak, retention and recovery ran as application UID 1000. A fresh UID-1000 one-skill batch also passed (30 samples, median 116 ms, p95 321 ms, 1,771 DB value bytes/preparation). Earlier harness-export, SSH, npm provenance, backoff and UI-wait failures remain recorded alongside their successful retries. - Private evidence includes raw timings, assertions, HTTP probes, screenshots and failure/cleanup receipts. Initial failed-campaign cleanup suspended and retained the owned TEST tenant and released the shared QA account lease at 15:22:41 UTC. The tenant was subsequently resumed under its existing ownership for the native execution qualification above. Final cleanup completed at 15:53:09 UTC: the account lease is released and the tenant is suspended/retained under the original October 30, 12:24:52 UTC retention deadline. Its separate stack lease remains held; no active or pending-cleanup environment lease remained. The original retention window is deliberately preserved even after successful continuation. - Earlier hosted-tested head: `a2e597d800eb989d565780e7aa947d5368676444`, integrated with master `929e840595`. The earlier merge conflicts were resolved at this head. [Current-head CI](https://github.com/paperclipai/paperclip/actions/runs/40884087629) passed; all checks are complete with 55 successes, two neutral reports, two skips, and no failures. [Apex review 15](https://github.com/paperclipai/paperclip/pull/18082#issuecomment-6480257258) passed 5/5 with zero findings on this exact head. All review conversations are resolved. - Ten real-filesystem boundary cases and server typecheck pass locally for the security fix. Coverage includes cache roots, descendants, individual files, symlink aliases, recursive ancestors, a future concurrent cache fill, and allowed sibling directories. [Current-head private-project integration tests](https://github.com/paperclipai/paperclip/actions/runs/40884087629/job/123483306405) passed all 29 cases, including authorized and unauthorized imports of a cached private package. Full typecheck, build, server suites, all eight browser shards, and Runner checks passed in current-head CI. Local database tests could not run because PostgreSQL could not initialize; this limitation is recorded below. - The earlier generated migration preserved the newest five snapshots. The final integration renumbers its unchanged SQL to 0415. Migration safety/numbering checks pass. Its SQL is byte-for-byte identical to the previously verified idempotent skill migration; repeated application on this latest schema was blocked by the same local database startup failure. - The broader verification before the final migration-only rebase passed 1,025 package, lifecycle, remote-launch, native-session, and asset-retention tests, 52 focused UI tests, full workspace typecheck/build, token gates, and map checks. The linked complete CI run passed before the latest focused fixes. - A disposable MinIO instance passed multipart upload, verified read-back, and cold restoration of an 18 MB archive. - Twenty warm samples with a synthetic 1,349-file, 22.8 MB repository retained five metadata queries and zero object reads. Median preparation was 256 ms for one selected skill and 691 ms for ten, with 5 ms emulated network delay each way. These are local measurements, not production latency guarantees. - No production instance was changed. Earlier verification failures and their disposition are retained below. <details> <summary>Earlier failures, review findings, fixes, and rerun evidence</summary> - The first CI pass found a stale inventory-span expectation and a missing repository-read span. Both are fixed; all three observability tests pass. One browser test copied page text into its YAML parser after reload; its first unchanged-head retry passed, but the race recurred after rebasing. The test now waits for the renamed URL and completed reload before copying the editor, retaining its original assertions. The earlier full local suite did not complete cleanly: it reported setup timeouts and assertions, while isolated relevant reruns passed. The complete current-head CI run closes that broad verification gap. No production instance was changed. - The first Apex review scored 2/5 and identified six issues. The fixes protect authored history even when it shares an in-flight Git upload, recheck upload expiry during orphan deletion, bound failed-upload cleanup, retain per-version kind/encoding metadata, add sanitized failure diagnostics, and correct the migration guide. The final focused run passes all 140 tests; the preceding eight-file run passed all 149 tests, including local storage and S3 diagnostics. Server typecheck and migration safety/numbering checks pass after the fixes. The second Apex review scored 1/5 and found unbounded maintenance storage calls and mismatched package/Git batch limits. Those are fixed with a 30-second cancellable cleanup deadline, shared 100 MiB/10,000-file scanner and storage limits, and bounded Git read batches. The proposed manual lockfile edit was rejected with evidence of the enforced CI-owned lockfile policy. All 19 storage/recovery unit tests and server typechecking pass. The new database-backed cleanup/conversion tests were locally skipped because the host exhausted its PostgreSQL semaphore capacity (confirmed directly by initdb). That gap is closed by current-head CI: [package-store tests](https://github.com/paperclipai/paperclip/actions/runs/40771320775/job/123109300889) pass all 18 cases and [package-worker tests](https://github.com/paperclipai/paperclip/actions/runs/40771320775/job/123109301157) pass all 7, with no skips in either suite. The corrected YAML browser shard passes. A separate planning-fixture test failed its cleanup DELETE with an activity-log foreign key violation after its behavior assertions passed; its one unchanged-head retry passed. The third Apex review scored 1/5 and identified a one-slot pool deadlock, projected path limits, cleanup holding the preparation lock during archive reads, and a publication/expiry race. These are fixed with transaction-local reads, prefix-aware bounds, isolated verification, and shared package row locks with a publication grace. The separate Paperclip review also found stale historical inspection, eager history downloads, and conversion retries blocking sleep. Those are fixed. Local PostgreSQL capacity recovered: the new database regressions ran, including the one-slot fork, paused storage during a warm turn, and a locked publication during expiry. The expanded run passed 144/145 tests; its remaining assertion still expected file bodies from the version list and was updated to fetch the selected version. The corrected company-skill suite passes all 81 tests, and the final package/projection run passes all 27. All 52 focused UI tests pass after updating their query-provider fixtures; the first UI run exposed a fixture remount, and the follow-up exposed an editing syntax error, both corrected. Full workspace typecheck and build, token gates, and map checks pass. The sandbox initially blocked the build tool’s local IPC socket; the authorized build rerun passed. Master then claimed migration 0401. The branch is rebased on `f8226b0515`, the unchanged SQL is regenerated as 0402, and repeated application passed twice on the combined schema. Post-rebase workspace typecheck passes. All 1,025 package, lifecycle, remote-launch, native-session, and asset-retention tests pass on the combined head. All CI checks passed for head 9d80a3b52d. The fourth Apex review scored 3/5 and found a save/edit lock-order cycle, a retry retaining an uncommitted source ID in its recovery recipe, and a summary read racing conversion. Commit b7d9237c6a fixes all three. The new concurrency and retry tests pass within all 61 package/source tests, and server typecheck passes. Master then claimed migration 0402. The branch is now rebased on `65fa1cd617` and the unchanged SQL is regenerated as 0403. All 68 package, source, and worker regressions, server typecheck, migration safety/numbering, and repeated migration application pass on current head `62553671a0`. Subsequent verification and review outcomes are recorded below. - The fifth Apex review scored 4/5 and found cached version reads unnecessarily depending on object storage and conversion reads missing the coordinator cancellation signal. Commit `1eb90d80be` fixes both: cached reads verify bytes without the preparation lock; manifest and archive reads carry cancellation through conversion. The first focused run passed 70/71 tests, including all three new cases, but the existing diagnostic test observed no warning. Its fixture now sets an explicitly expired migration deadline; the final worker suite passes all nine cases. Server typecheck passes. - The sixth Apex review scored 4/5 with one finding: concurrent cached inventories were unbounded. Commit `4b7589e14c` gives cached inventories and previews a two-reader/32-waiter limit independent of cold storage. The first expanded pressure test observed a third reader before the preview path had the same bound; both paths now share the local limit. All 73 focused cases pass, followed by all 29 package cases after the final overload adjustment; server typecheck passes. The separate Paperclip review found no must-fix or should-fix issues. Its optional suggestion to persist durability verification was considered: cleanup intentionally verifies current external bytes before discarding the last local authored copy, and the missing-object regression requires that check. Shared-package eviction happens on cold fills with at most two attempts and a ten-second budget. - The seventh Apex review reached 5/5 with one remaining P2: timeout-bearing manifest reads bypassed request coalescing. The security review also found repeated archive acquisition after a cold administrative read. Commit `79a80a39d2` shares manifest loads with per-caller cancellation and cancels the underlying work when the last caller leaves; coalesces identical cold version/file requests; and publishes verified restored packages into the shared cache. Publication uses a short nonblocking lock, while eviction verification runs outside it. The first expanded run passed 73/74 tests and exposed a missing originating DB for cache publication inside read-only inspection; transaction readers now pass that owner explicitly, keeping metadata on the transaction. The corrected run passed 75/75. A final eviction test initially expected the shared package to remain after only its separate runtime projection was reused; it now explicitly accesses the shared package during verification. All 32 final package tests pass, including independent caller cancellation, one acquisition across concurrent/repeated reads, and warm preparation during stalled eviction verification. Server typecheck passes. - The eighth Apex review scored 4/5 with one finding: decoded cold inventories outlived the storage semaphore while waiting for cleanup. Commit `9d7921d1ec` adds a separate two-response/32-waiter lifetime bound held through cleanup, preserving the independent warm-read queue and forwarding cancellation through eviction verification. The new regression pauses cleanup after two responses decode, verifies a third archive stays queued, and completes warm preparation before releasing cleanup. All 77 package/source/worker cases and server typecheck pass. On the preceding head, serialized server shard 6/9 was interrupted with “The operation was canceled” after 57 seconds of tests; the log contains no failing assertion. Fresh latest-head CI reruns that shard along with the other gates. - The ninth Apex review scored 4/5 with one P1: cold responses could own both permits while waiting on a one-slot ordinary database pool held by a queued transaction reader. Commit `a94f0e409f` reads caller-scoped metadata before admission and isolates all acquisition/cleanup SQL on a private connection. The new real-PostgreSQL regression reproduces the deadlock against the previous head and passes with the fix; all 78 focused cases and server typecheck pass. The previous CI run completed with 54 successful checks, including both formerly interrupted/stuck serialized shards. - The tenth Apex review scored 4/5 with one P1: preloading legacy bodies before admission could retain many full repositories in queued requests. Commit `276e353a37` removes that preload and also bounds legacy manifest derivation/fallback, using private connections inside the I/O slot. All 80 focused tests pass; the final synchronized package suite passes all 36 tests and server typecheck passes. - Apex review 11 returned 5/5 with zero comments on `276e353a37`. While it ran, master `8bc051245f` added migration 0403, creating a metadata conflict. Merge commit `e1783764d9` integrates master and generates 0404_clumsy_leo.sql; its skill SQL is byte-for-byte identical to the previously verified migration. The combined schema passes migration safety/numbering, repeated SQL application twice, all 80 focused PostgreSQL tests, full workspace typecheck, and full build. The preceding `a94f0e409f` CI run was superseded and cancelled while its final runner job was active; no old-head success is claimed for that run. - Final acceptance: Apex review 12 returned 5/5 with zero comments on `e1783764d9`. All 28 review threads are resolved. The final head has 55 successful checks, two neutral reports, two skipped checks, and no pending or failing checks; the PR workflow completed successfully. Superseded run 40789121902 was cancelled to free its workflow slot for the final head; normal cancellation did not finish promptly, so force cancellation completed it. - October 29 conflict resolution (`867c00673b`): master `929e840595` added installed-selection reuse and bundled relocation, routine cleanup notifications, a hardened YAML copy helper, and migrations through 0413. The merge retains those behaviors together with package read scoping and the public-selection fast path; restricted selections still reauthorize and the full row read rechecks scope. Generated migration 0414 retains the existing SQL unchanged. Workspace typecheck/build and migration checks pass. Local database verification is unavailable: initdb reports semget / “could not create semaphores: No space left on device”; all 168 cases skipped, and repeated migration application failed at startup. Docker returned HTTP 500 during container creation, so no Docker test pass is claimed. Current-head CI must close this gap. - Apex review 14 scored 3/5 with one P1: a local import could copy cached private package files into a company-wide skill. Commit `a2e597d800` rejects cache trees and ancestors through a canonical filesystem boundary, including aliases and ancestors checked before a concurrent fill. Ten local filesystem tests and server typecheck pass. The existing private-project integration case now rejects package-cache imports for both authorized and unauthorized users. The preceding merge commit’s complete CI run passed, and logs confirm all 168 locally skipped cases executed successfully: package store 36, sources 35, package worker 9, runtime selection 4, observability 3, authoring 81. - Apex review 15 returned 5/5 with zero new findings on `a2e597d800`. The separate Paperclip review found no must-fix or should-fix issues. Its optional suggestions were considered: unexpected filesystem cleanup failures remain visible, the durable marker cannot replace checking that bytes still exist before deleting a last local authored copy, and administrative history batching remains outside the pre-turn optimization. The cache-path literal centralization suggestion is also optional; the current producer and guard use the same directory, covered by the new integration regression. All review conversations are resolved. - Earlier October 29 CI/Apex acceptance: `a2e597d800` was mergeable at that check, Apex review 15 passed 5/5 with zero findings, and all review conversations were resolved. The hosted verification above records the later acceptance limits and renewed conflicts. Workflow 40884087629 completed successfully, with 55 successful checks, two neutral reports, two skips, and no pending or failed checks. The project-skill-sources job log confirms all 29 cases ran and passed, closing the latest integration gap. The preceding merge workflow also confirmed all 168 focused database cases ran and passed. No local PostgreSQL or Docker pass is claimed. </details> ## Risks - First use after eviction can require storage or Git access. Revoked grants, removed sources, and unreachable commits can prevent reconstruction. Recovery never substitutes a newer commit. - Historical packages without a proven recipe keep durable bytes. Cleanup favors retention when a run pin cannot be interpreted safely. - New uploads and conversion use bounded work and persisted retries. Large initial conversions still add temporary storage and database load. - Optional cleanup can wait until the next server wake. Supported notifications assume one owning server process. - Per-entrypoint native tree duplication and cold preparation cost remain. The final ten-skill cold sample took 47.6 seconds on the shared host. - Generic authored edits can still hold an existing edit transaction while a package uploads. - Explicit file/folder deletion uses temporary disk space for rollback. An uncertain commit with a changed skill or unavailable database retains that backup and logs its location for recovery. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and tests. The exact served model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 12:19:37 -05:00
DottaandPaperclip	2a6d4d1694	perf(db): index canonical task activity lookups (#18043 ) <!-- entire-trail-link-start --> https://entire.com/gh/paperclipai/-/trails/177/changes/paperclip/177 <!-- entire-trail-link-end --> ## Thinking Path > - Paperclip helps people manage AI agents and their tasks. > - Task lists rank tasks by their latest canonical activity. > - The existing lookup reads every event for each task before pagination. > - Query-only alternatives failed a narrow visibility control or the performance goal. > - This PR adds an index that lets the unchanged lookup stop at the newest qualifying event. > - The result is less history work with the same permissions, ordering, and response. ## Linked Issues or Issue Description Refs: #13803. That broader proposal stores a new activity field with triggers and a backfill. This index was authored independently and uses the existing query. Subsystem affected Task-list activity ranking and the database schema. Current behavior The list computes `MAX(activity_log.created_at)` for every eligible task. The existing entity index reads 50 events per task across 1,199 candidates in the representative fixture. Proposed behavior Add `(company_id, entity_type, entity_id, created_at)`. Keep the production task service and permission helpers unchanged. PostgreSQL reads backward until an event passes the existing exclusions. Reason and benefit Fresh paired measurements on the current base improve the full-description scoped SQL from 44.60 to 20.33 ms (2.19×). Activity buffer accesses fall from 63,547 to 4,796, and history rows per probe fall from 50 to one. The complete service median falls from 50.63 to 31.31 ms. Complete positional SQL results and service responses match. ## What Changed - Add generated migration `0414_closed_edwin_jarvis.sql` and the matching Drizzle index. - Use `CREATE INDEX CONCURRENTLY IF NOT EXISTS` through the existing top-level runner and invalid-index retry cleanup. The client change is one whitelist entry. - Preserve all upstream SQL and journal entries; retain snapshots 0410–0414. - Cover full and index projections, canonical ordering, invalid-index recovery, concurrent migrators, and incomplete fixture rejection. - Repair benchmark seeding, apply requested work memory to both connections, and record both settings. Hosted defaults now include six Slack conversations, 642 GitHub conversations, and 53 removed conversations. ## Verification - All final-head CI gates passed, including full workspace typechecks, tests, build, Runner checks, and all eight E2E shards. Greptile is 5/5 on `67ca7ae1cf15fc054ef515ffd8205b1fe30a0d55`; no unresolved review threads remain. - Local database/server typechecks and migration numbering/safety checks pass. Three server regression tests and three migration regression suites pass on real PostgreSQL. - The original pre-index work guard fails at eight rows per probe; the indexed guard now checks both the full-description query and index projection. The service oracle covers cleanup/inbox exclusions, raw text IDs, company scope, comments, ties, sort directions, visibility before pagination, empty lists, and one child per parent. - The documented pre-index seed command reproduced the review failure before the fix and now succeeds. A paired run with non-default memory confirms both independent connections use `16MB`. - Fresh proof pins pre-index base `929e840595c8933ca485ac7a2e99413e1e11ca64`, with identical cloned data, unchanged generated SQL and parameters, two warmups, and five alternating samples per arm. All 18 comparison cells preserve every positional row and complete service response. The 15-case default-memory matrix passes its physical-work, speed, and control bounds. - The one-visible-task control is 6.64 → 7.25 ms SQL; the 20-task control is 3.71 → 3.72 ms. Both pass the declared 25% or 2 ms budget. Full-query memory controls use matching `4MB` or `16MB` settings. - Committed 1,000-row write batches measured 40.09 → 43.17 ms median (+7.7%). Ranges overlap (34.67–71.85 and 34.27–48.05 ms); this is an observed local cost, not a precise throughput guarantee. - The final-numbered migration builds a valid index through the normal runner on the fresh 300,000-row fixture in 0.55 s. Earlier large-fixture proof of the same index SQL used 5,000 tasks and 1.25M activity rows: 2.58 s first apply, concurrent write/read probes 5.16/2.43 ms, interrupted invalid-index cleanup, successful retry, and one receipt. Current migration recovery tests verify the renumbered path. - [The proof document](https://github.com/paperclipai/paperclip/blob/67ca7ae1cf15fc054ef515ffd8205b1fe30a0d55/docs/performance/task-list-activity-index.md) retains the historical baseline, rejected rewrites, and the earlier matrix invalidated by severe host contention. Those historical timings are not substituted for the fresh measurements above. ## Risks The migration is an exception after measured query-only alternatives failed. The index adds storage and work to every activity write: about 30 MiB for 300,000 rows and 123 MiB for 1.25M rows. Concurrent creation avoids the writer blocking observed with an ordinary index build, but long transactions can delay it. Local timing does not establish Neon build duration. The query still ranks all eligible tasks, and excluded newer events still need to be skipped. These are local SQL/service measurements; deployed HTTP latency remains unverified. No hosted DDL or deployment was performed. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, code execution, and tool use. The environment does not expose the exact model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked existing issues or described the issue using the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal issue id - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 09:06:41 -05:00
Dotta Paperclip Codex	79ce86630a	fix(server): schedule governed review response recovery (#17702 ) ## Thinking Path > - Paperclip manages agents, tasks and their external chat responses. > - A completed chat turn can owe a response while an earlier review gate remains pending. > - Periodic recovery revisits that response history even when no work can advance. > - This change uses the existing delivery coordinator and saved retry deadlines. > - Approval, interaction and authority changes wake the affected issue or run after commit. > - The existing presentation owner verifies the durable result and current authority. > - Settled and dormant history becomes quiet without losing future eligible responses. ## Linked Issues or Issue Description Refs #17696 (merged) and #15625. This is slice 49, now based on master. It owns governed-review response presentation. Accepted responses and pending decision effects keep their existing owners. What happened? Native finalization recovery repeatedly inspects committed review responses. Removing the scan without covering approval, interaction, task-policy and authority changes would strand responses that become eligible later. Expected behavior Recover an owed response once from existing durable facts. Enforce authority at publication, wake after relevant outer transactions commit, retain real retry deadlines and restart/drain recovery, and stop recurring SQL when no response can advance. Steps to reproduce Complete an external chat turn while an earlier completion review remains pending. Block its response behind an approval or interaction, then resolve that blocker. The response must appear once without a periodic scan or resolving the original review gate. ## What Changed - Add a scoped governed-review worker using the existing coordinator, finalizations, decisions and comment receipts. No queue table or transaction wrapper is added. - Keep recovery and publication policy in the native finalizer. Preserve binding, source/session authority, ownership, deadline and deleted-comment fences; match coordinator-before-issue lock ordering. - Notify through actual approval, interaction, OAuth, task-policy and lifecycle producers before their owned writes. Serialize approval resolution with task linking so a concurrent link retains its wake. Nested transactions still settle at outer commit. - Scope ordinary milestones, finalization and coalesced input to their issue/run. Use the explicit company authority boundary for genuine global restoration, including membership changes. Both response workers share this boundary. - Register under maintenance and drain gates, disable the two periodic repair entrances, and retain fresh finalization and explicit recovery. Add the concurrent 0413 comment-receipt index and migration registration; retain five snapshots. - Preserve the producer inventory, source qualifications and earlier failures in the owner audit. Retain a real Photon regression proving routine ownership assertions stay quiet and concurrent authority restoration wakes each worker once. ## Verification - Scoped repair source `2341714720b5c273f0ce011b48345af0ef39227f` passes 2053 distinct cases: 1703 in 15 complete producer/authority/recovery files, including all 273 governed-response cases and 95 wake-queue adapter cases, plus 350 selected chat cases. Another 1463 chat cases are outside that selection. Thirteen fresh PostgreSQL 17 fixtures migrate through unchanged 0413; the one temporary queue-fixture import restores exactly. All sixteen captured hashes match. - Two actual repeated coarse-hint SQL regressions fail before repair and pass afterward. Actual membership restoration passes before and after. The same assertions and time limits prove dormant work stays quiet and real authority restoration still publishes once. Real coalesced input covers both queues after commit. - Combined source `586f5674cd9798b33cd22437255e0480b5726d20`, including independent master #18129, passes 1297 distinct cases: 1093 in five complete server files, 185 in five runner files, 14 Node protocol cases and five UI registry cases. This includes the complete 22-case Photon file for both response workers. The external Photon transport is mocked; Paperclip callbacks, transaction fences and observed SQL are real. The earlier and combined case counts are separate, with no cumulative double-counting. - A normal merge retains both complete owned and independent master binary patches. All twelve new-context hashes and sixteen earlier repair hashes match. Three dedicated fresh 0413 fixtures plus the live-event helper's own fresh database use PostgreSQL 17 without source adaptations. Database build, server types/build, boundaries, full-SHA migration order and generated TS/Rust profiles pass. The new inherited Runner vendor inputs rebuild successfully. - Database bytes remain identical to the previously qualified 0413 source. The recorded populated 0412-to0413 upgrade retains all 411 prior receipts and 38 companies, appends one receipt and none on replay; the index is valid and ready. The earlier 2828-case acceptance, CLI journey, setup failures and their repairs retain their recorded source scope in `doc/plans/2026-10-26-governed-review-response-sleep-audit.md`. - Parent #17696 merged with 58 clean checks, Greptile 5/5 and Ponytail 5/5. Its Photon warning was disproved by real callback/SQL evidence and the security check became successful. This PR still requires its own fresh exact-head CI and review gates. No deployed sleep, external alarm or fleet savings claim is made. ## Risks - Notifications use the existing process-local writer contract. Independent SQL writers and uncoordinated replicas are outside its coverage. - Genuine startup and company authority reconstruction remain proportional to the owed backlog. Queries page 100 rows, but discovery accumulates the candidates; this is not a constant-cost global operation. - Current publication authorization, durable binding, ownership and lock ordering remain mandatory. The worker does not resolve the original review gate. - The concurrent index uses existing migration replay handling. Other recovery duties and Cloud sleep eligibility remain separate. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, shell execution and PostgreSQL tests. The runtime does not expose a more specific serving snapshot or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-10-29 02:54:46 -05:00
Dotta Paperclip Codex	ec3b558277	fix(server): schedule accepted native response recovery (#17696 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs store accepted results and their finalization decisions. > - A completed run can still owe its public answer after an interruption. > - Periodic recovery scans for that answer even when no new work exists. > - This pull request wakes recovery from committed changes and saved retry deadlines. > - The existing owner still verifies the result, source, and current publication authority. > - Settled or dormant response work no longer needs its own periodic scan. ## Linked Issues or Issue Description Refs #17690 (merged). This is slice 48 of the sleep migration stack, now based on master. Related: #17661 handles GitHub terminal publication; this change handles native accepted-response presentation. Governed-review presentation remains a separate duty. What happened? Native finalization recovery repeatedly checks already accepted results for a missing answer. Removing that check without complete notifications would lose responses when evidence arrives late, an agent resumes, or admission settles after execution. Expected behavior Recover the answer from its saved result when a supported change makes it eligible. Retain real retry deadlines. Stop querying when the answer is selected or cannot currently be published. Reconstruct work after restart. Steps to reproduce 1. Commit a native accepted result with no selected response comment. 2. Run finalization recovery while its source is unavailable or locked. 3. Restore that source or release the lock. The answer must appear once without repeating provider execution. ## What Changed - Honor recorded non-create decisions and skip-comment policy in both discovery and recovery. Apply durable conversation/result/continuation guards before recovery locks. Preserve genuine unanswered and legacy recovery. - Scope routine response wakes to the affected issue/run. Coalesced input names its active run; pending-effect settlement names its issue. Sixteen existing global authority/configuration hooks use one explicit company invalidation boundary. No new transaction wrappers or tables are added. - Add an accepted-response worker using the existing delivery coordinator and scoped deadline helper. Preserve saved retry deadlines and pending-effect fences under the owner's lock. - Share the finalization notification boundary. Wake on finalization settlement, exact accepted-result/final-message evidence, agent availability, retry admission, and existing chat authority changes. - Keep lifecycle policy in services. A narrow pre-write status hook lets lifecycle retain ownership of its transaction and status transitions. - Register the worker during enabled maintenance startup. Remove its authority subscription on shutdown. Periodic replay skips this duty on both committed and fresh-commit paths; ordinary finalization and explicit recovery retain their behavior. - Add a partial index and expression statistics for unpresented native runs. Migration 0412 supports concurrent replay and adds no queue table. - Add real PostgreSQL and lifecycle coverage. Preserve the implementation and producer audit in the plan document. ## Verification - Additional real Photon callback acceptance on the published production code disproves the security warning: ten active assertions cause zero response-recovery hints/SELECTs, while three concurrent assertions during an actual attention-to-active recovery cause exactly one wake/SELECT. The existing locked status guard already enforces this boundary. No production change was needed; the resolved finding now has a successful current-head security check. The regression will be retained with the next slice. - Eligibility repair source `892f36e5f66ba1af123034936a7160c64c3ab883` passes 1489 distinct server cases: 1139 in six complete recovery/finalizer/monitor/summary/workspace suites (81.02 seconds), plus 350 selected chat cases (297.68s). Another 1463 chat cases are outside the pattern; the complete 1813-case file is not claimed. All eleven new regressions are included in that count. Five dedicated fresh PostgreSQL 17 databases migrate through unchanged 0412, with no fixture-source adaptations. Database build, server types/build, boundaries and full-SHA migration ordering pass. All seven test source hashes match. - The exact published baseline first fails eight behavioral assertions while the three genuine-answer cases pass. The same corrected test source passes all eleven after repair: recorded none/reuse remain suppressed; five ineligible history families take zero recovery row locks across repeated issue hints; missing/legacy/create-null answers still publish once; fresh periodic finalization defers presentation to its worker. Earlier fixture setup and variable/compiler failures remain explained in the audit, rather than erased by later success. - Repair source `2fc8b0614aaf9ac7337045de4ced7325f95edc45` passes 1821 server cases: 1496 in 13 complete producer/lifecycle/authority suites (110.63 seconds), plus 325 selected chat cases (278.99 seconds). Coverage includes all native-session cases, queue admission, status decisions, membership/board access, the complete GitHub workflow, accepted-response lifecycle and real authority restoration. The other 1477 chat cases are outside this selection; the complete 1802-case file is not claimed for this repair run. - Actual PostgreSQL regressions first reproduce a coalesced-input hint missing its run scope and two routine hint paths producing 12 response-history SELECTs each after three notifications. The same assertions pass with run-scoped coalescing and zero response-history SELECTs for unscoped routine hints. Actual membership restoration still publishes the waiting response once. Assertion time limits are unchanged; this measures real driver SQL and persisted producer work. - Eleven dedicated fresh PostgreSQL 17 databases migrate through 0412. One embedded-only wake-queue fixture import temporarily uses its own external database and restores byte for byte. All 14 selected source files match pre-run hashes. This qualifies external-database behavior rather than reproducing embedded CI locally. - Master advanced independently with #18126's Pi archive retry fix. Normal merge `2a535bc61259ef99387369e8b32498f774e5ba2c` preserves both complete binary patches. All accepted server/database/UI/test/CLI trees stay identical; the three independent runner installer/manifest files are retained. All 13 installer tests pass, including stalled header/body cancellation. Combined server types/build, boundaries and full-SHA migration order pass. A subsequent normal merge of #18128 at `e8b78cce5bb557b086bee9ca930eeaab1d09b244` retains its three test-only file changes with both complete patches preserved. The changed HTTPS backfill case passes on a fresh PostgreSQL fixture (1 selected case; 178 outside the pattern), and combined types/build, boundaries and migration order pass again. All 14 repair source hashes remain unchanged. The independent browser fixture changes are preserved; no local browser run is claimed. - The earlier source `9feec170ef8174011fc3c5d3d6d76f0a0f39fea0` passed the 4171-case full baseline before this scope repair. That scope is preserved in the audit rather than represented as a current full rerun. All 0412 database bytes remain unchanged: original concurrent index/statistics/ANALYZE, prior executable history, journal entries and retained snapshots. Five snapshots 0408 through 0412 remain. The populated 0411-to0412 upgrade preserved 410 prior receipts and 38 companies, appended one receipt and none on replay; index/statistic checks passed. - The earlier P2 security failure, Greptile's former conditional dependency on #17702, and the subsequent actual Ponytail eligibility findings are recorded in `doc/plans/2026-10-25-native-response-presentation-sleep-audit.md`. This PR now includes the issue-scoped pending-effect notification fix itself, so it is independently correct before #17702. Fresh published-head CI, Greptile 5/5 and a clean security scan remain required. No deployed-sleep, external-wake or fleet-savings claim is made. ## Risks - The writer contract is process-local. Independent SQL writers and other replicas are not covered by these notifications. - Unpresented backlog reconstruction still has memory and time cost proportional to candidate count. Pages contain at most 100 rows; execution uses the shared fair batch. Selected history is excluded. Health-only signals do not trigger reconstruction. - Publication policy remains with its current owner. Digest, company/run binding, source authorization, selected-answer suppression, and ownership fences remain required. - The rest of native recovery and governed-review presentation still run separately. This PR does not relax Cloud sleep eligibility or add external wake coverage. - The stack parent has merged and its actual ancestry is reconciled. This publication still needs fresh current-head CI and review. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, shell execution, and PostgreSQL tests. The runtime does not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-10-29 02:31:20 -05:00
Dotta Paperclip Codex	a8a038e659	fix(server): schedule native pending effect recovery (#17690 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native status decisions store effect targets and a delivery ledger. > - Historical pending or failed effects still need recovery. > - The periodic finalizer queries that ledger even when work is complete. > - This pull request gives pending effects their own commit-driven worker and saved deadlines. > - Completed history becomes quiet while incomplete effects remain recoverable. ## Linked Issues or Issue Description Refs #17687 (merged). This is slice 47 of the sleep migration stack, now based on master. What problem does this solve? Periodic native finalization repeatedly checks effect delivery. A tenant with completed history should not perform recurring SQL for this duty. Historical unresolved effects must still recover without duplicating their targets. Proposed solution Reconstruct current pending effects at startup. Wake from committed coordinator changes. Use the saved retry and ownership deadlines. Keep the existing dispatcher as the only recovery mutation owner. Alternatives considered A slower unconditional scan still creates idle traffic. A new queue table duplicates existing durable state. Replaying materialization can duplicate effects. This change uses the existing ledger, transaction signals, and shared scheduler. ## What Changed - Add a scoped worker with 100-row discovery pages and fair 25-entry dispatch batches. Delivered, superseded, and terminal-failure history has no recurring scan. - Preserve exact company/issue/run/decision binding and validate materialized targets before settling effects. Recheck phase, saved result, retry, and lease under the coordinator lock. Missing targets retain recovery. - Notify from decision replay, accepted-result recovery, coordinator claim/retry/release, attention replay, and execution-control recovery. Only two DB-only producer writes need a new transaction wrapper. Nested transactions use the existing outer-commit boundary. - Exclude pending-effect candidates from periodic finalization so it cannot skip ahead of their owner. Keep explicit and startup recovery behavior compatible. Respect maintenance disablement, drain, standby, and shutdown. - Add concurrent, idempotent migration 0411 with partial indexes for pending effects and their current coordinator binding. Retain the five newest schema snapshots. - Document producers, query evidence, failure history, and scope in `doc/plans/2026-10-25-native-pending-effects-sleep-audit.md`. ## Verification - Source `ba38ee465df02b6026286b5d5e15ae49fe07a367` passes all 2284 distinct cases across 25 complete files, without skips. The main selection passes 2225 in 203.94 seconds; safe-replacement passes 59 in 26.03 seconds. Coverage includes all 968 native-session cases, the 94-case status-authority/pending-effect corpus, actual decision/lease producers, Stop, queue, interaction, reconstruction and Slack consumers. The audit gives per-file counts. - The complete 94-case corpus passes again on the same database in 16.03 seconds. Retained PSC/OUT rows and an unrelated sentinel remain unchanged. The repeat is not counted again as distinct coverage. - Twenty-one separate fresh PostgreSQL 17 databases migrate through 0411 before setup. Four embedded-only fixture imports temporarily use their own external database on this IPC-exhausted host and are restored byte for byte. Assertions and timing limits stay unchanged. This qualifies external-database behavior; it does not claim an unmodified embedded CI run. - Database build, server typecheck/build, module boundaries and exact-head migration order pass. Original runtime/schema edits and unrelated upstream blobs are preserved. Both original concurrent index statements, all prior executable history, journal entries and retained snapshot bytes are unchanged; five snapshots 0407 through 0411 remain. - Populated 0410-to0411 upgrade preserves all 409 prior migration receipts and 38 companies, appends one receipt and adds none on replay. Both indexes are valid and ready on fresh and upgraded databases. - Adopting the latest prepared prerequisite changes ancestry and parent audits only. All accepted core trees remain identical. The audit retains earlier failures and qualifications. Actual landed-parent ancestry is now reconciled; fresh published-head CI and exact-head Greptile 5/5 remain required. No deployed sleep, Cloud-wake or fleet-cost claim is made. - Current parent context: integration `5f7cd7bc589ad0169dfb5f33df611ead56510ca3` changes only the parent's GitHub observation bound and independent cleanup assertion. All production code, packages and 25 accepted test files remain unchanged. Both focused GitHub idle cases pass in 15.26 seconds and the complete six-case cleanup suite passes in 8.47 seconds on two fresh 0411 PostgreSQL fixtures. This does not claim the full parent workflow was rerun here. ## Risks - A missing producer can delay work until restart. The audit covers current supported writers. Independent SQL and other processes remain outside the local notification contract. - Recovery validates existing targets; it cannot recreate a missing target or silently mark it delivered. Such work retains an error and retry. - The indexes add write/storage cost and use the existing restart-safe concurrent migration runner. - Other finalization duties still poll until their separate migrations. This PR does not prove host/database suspension, extend Cloud alarms, or claim fleet savings. - The actual prerequisite squash is adopted through a normal merge. Its complete tree equals the reviewed parent, and the complete accepted child tree is preserved. Fresh published-head CI and review remain required. ## Model Used OpenAI Codex, based on GPT-6, with reasoning and code-execution tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: Codex <noreply@openai.com>	2026-10-29 00:28:00 -05:00
DottaandPaperclip	4e715eb7ea	fix(server): schedule historical unsafe export recovery (#17687 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs can retain accepted results after an unsafe workspace export fails. > - Historical recovery can retire an old notice or resume the accepted result without another provider turn. > - The periodic reaper repeatedly scans failures that cannot currently recover. > - Existing rows and committed changes can identify the actual recovery obligation. > - This pull request wakes recovery from those changes and retries only owed work. > - Dormant history becomes quiet while ownership and explicit operator decisions remain protected. ## Linked Issues or Issue Description What happened? The native finalization reaper repeatedly visits historical unsafe workspace-export failures. Cancelled tasks, newer runs, changed contracts, and explicit operator decisions can make those rows permanently ineligible. They still produce periodic database reads. What did you expect? Retire stale unsafe-export notices and recover eligible accepted results. Stop reading dormant history until a relevant committed change occurs. Keep a retry while a real obligation is blocked by ownership or a transient failure. Steps to reproduce Retain an unsafe-export terminal failure whose task is cancelled or superseded. Leave the instance idle after startup. The periodic reaper continues reading that history. Prerequisite #17680 is merged into master. Related: #14402 established safe export finalization; #14329 was an earlier historical recovery proposal. #17679 owns separate policy-review cleanup. This PR changes only historical unsafe-export scheduling and its producers. ## What Changed - Register a scoped worker through the existing coordinator and scheduler. Remove this duty from periodic reaping. Preserve the manual/startup recovery entry point. - Distinguish stale notices, eligible accepted results, dormant history, and concrete ownership contention. Reuse the existing mutation owner and lock order. Preserve explicit settlement vetoes and exact result/contract identity. - Signal relevant task, run, action, and deletion writes before they commit. Existing transaction boundaries handle nested commits and uncertain outcomes. Notifications contain only scope IDs. - Retain a retry only for owed work. Reconstruct work at startup, preserve drain/resume, and stop through the shared lifecycle. - Add concurrent, idempotent partial index migration 0410 for unsafe terminal failures. Keep the five newest generated schema snapshots. - Document producer coverage, query plans, supported writer boundaries, and test failures in the unsafe-export audit. ## Verification - Source `2a13dd08a6cc52f0adab09e3df9ce31e97b746b9` passes all 2188 cases across 24 complete files, without skips. The main selection passes 2129 cases in 192.58 seconds; safe-replacement passes 59 in 26.04 seconds. Coverage includes all 968 native-session cases, real export/action producers, explicit continuation, workspace reconstruction, interaction routing, Stop, queue and Slack consumers. The audit gives per-file counts. - Twenty separate fresh PostgreSQL 17 databases migrate through 0410 before setup. Four embedded-only fixture imports temporarily use their own external database on this IPC-exhausted host, then are restored byte for byte. Assertions and timing limits stay unchanged. This is qualified external-database acceptance, not an unmodified embedded CI run. - Database build, server typecheck/build, module boundaries and exact-head migration order pass. Normal integration preserves the complete original runtime/schema patch and unrelated upstream blobs. Original concurrent index SQL, all prior executable history, journal entries and retained snapshot bytes are unchanged; five snapshots 0406 through 0410 remain. Added comment removal preserves the full non-comment TypeScript token streams. - A populated 0409-to0410 upgrade preserves all 408 prior migration receipts and 38 companies. It appends exactly one receipt; replay adds none. The index is valid and ready on fresh and upgraded databases. - The owning audit retains earlier fixture failures, skipped checks and notice-retirement regression history. Older combined stack checks retain their original scope in their owning audits. Actual parent `73d24aa5acfcf17b3f676b4da7cd05eb70b60b99` is reconciled through a normal merge. Its tree equals the reviewed ancestor and the complete accepted child tree is unchanged. Fresh published-head CI and Greptile 5/5 remain required. No deployed sleep, fleet-cost or live provider qualification claim is made. - Inherited prefix correction: current integration `8f43c9f81fac23b50997e7f0e1d0d9cf383a8109` changes only two values in a previously unselected corpus fixture. All production code, the complete package tree and all 24 accepted test files remain byte-identical to the 2188-case source above. The additional complete 72-case corpus passes in 14.00 seconds and again on the same database in 13.08 seconds. Retained PSC/OUT and sentinel rows remain unchanged. The repeat is not double-counted. The parent audit retains the original collision and rejected cleanup attempt. - Latest parent context: integration `4d51231abe8b68c21ce896d0d2ac16865978c8ab` carries only the parent's one-argument GitHub observation correction and an independent master cleanup assertion. All production code, packages, 24 accepted suite files and the additional corpus are unchanged. The two focused native-presentation cases pass in 15.14 seconds and the complete cleanup-removal suite passes all six cases in 8.31 seconds on two fresh 0410 PostgreSQL fixtures. This does not claim the full parent workflow was rerun here. Current head `b28399babac72ba9db1c4a4ef882c5e87aded38c` has passing CI and Greptile 5/5 with no actionable findings. The first CI attempt lost runners: fourteen jobs explicitly received simultaneous shutdown signals, two reported lost runner communication, and two aggregate gates failed downstream. One failed-job retry on unchanged source passes. The underlying host shutdown cause remains unconfirmed; no code fix or extra retry is claimed. [CI run and attempts](https://github.com/paperclipai/paperclip/actions/runs/40819408528). No Ponytail verdict is present. ## Risks - A missing future producer can delay dormant-history discovery until restart. The audit names current producers. Independent SQL writers and other server processes remain outside the process-local signal contract. - Physical ownership and uncertain operations retain retries. Time alone does not authorize taking workspace ownership. No provider turn or unsafe archive retry is added. - The recovery owner remains authoritative if state changes after discovery. Terminal UI status does not authorize resource destruction or accepted-result replay. - The partial index adds matching-row write/storage cost. It builds concurrently through the existing restart-safe migration runner. - This proves the changed worker becomes quiet. It does not prove host suspension, external wake coverage, or fleet cost savings. Other sleep migrations remain. This slice still requires fresh current-head CI and reviews. ## Model Used OpenAI Codex, based on GPT-6, with reasoning and code-execution tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-29 00:13:22 -05:00

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