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| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 DottaandClaude Opus 5.5
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37808f2a4e |
fix(accounting): close a local-Runner turn completed across a session restore as a lower bound (#20517)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs record usage receipts, and accounting settles a run's charge once its final receipt is complete. > - ACPX Claude reports provisional zero usage until a turn ends, then one final report. > - A restart can stop the provider after the agent's finish call and before that final report. The restored Runner then resumes the session and reports the same turn completed with no complete report. > - The receipt stayed incomplete, so the accepted run waited for the 10-minute closure timeout and then settled as unpriced. Its spend was missing from company totals in the meantime. > - This pull request closes such a turn as a lower bound, the same way a turn the Runner fails as lost on restore is already closed. > - The benefit is that an accepted run settles right away with its observed usage and an honest lower-bound label. ## Linked Issues or Issue Description Refs #20484 (restart-chaos L1 contention follow-up). **What happened?** After #20484 fixed the database contention, restart-chaos L1 (`--seed 20386 --db-pressure 4`, codex and claude, K1) reached 4/4 tasks done. Each task still failed the T-oracle `company_spend_settled` with `pending_runs=1`. A replay on master with `--keep` (`w-20261110T100747-s20386`) reproduced it, and I read the kept database: - The pending run (`71f71d10`, ACPX Claude) succeeded and had its result accepted. Its usage had `accountingReceiptReady: false`, zero tokens, `costStatus: unpriced`, and no cost event. - Its only turn started before K1, and every usage report in it was provisional (`runDeltaComplete: false`). K1 struck right after the agent's `paperclip_finish` call (source seq 118), before the turn's final report. - On restart, recovery verified the local process stopped and resumed the session (`session.resumed`, seq 119). The restored Runner then reported the same turn `turn.completed` (seq 124) with no usage report. - The other Claude run in that wave lost its turn as `provider_turn_lost_on_restore`, ran a new turn live with full usage, and settled at once. **Expected behavior** An accepted run whose open turn's final report was lost with the provider process settles promptly. It records its observed usage as a lower bound, like a turn lost on restore. A complete report that does arrive after the restore is still used. **Steps to reproduce** `server/src/services/native-runtime/native-usage-accounting.test.ts > closes a turn that completed across a session restore without its final report, as a lower bound` uses the event sequence from the kept database. It fails on master because the snapshot stays incomplete. ## What Changed - `createNativeTurnAccounting` observes `session.resumed` and marks every open turn as restored. A terminal event for a restored turn without a complete report marks it lost. The snapshot then closes it as a lower bound (`accountingUsageLost`), through the existing lost-on-restore path. A new `turn.started` clears the mark. - A lost terminal turn keeps its identity in the snapshot, so the executor's terminal-turn match certifies the final checkpoint as complete. This came from review. - The native session executor includes `session.resumed` when it rebuilds turn state from the run's event log after a controller restart. - `doc/SPEC-implementation.md` documents the case next to the existing lost-on-restore rule. ## Verification - Red on master, green here: `native-usage-accounting.test.ts > closes a turn that completed across a session restore without its final report, as a lower bound`. It also checks that replaying the history twice gives the same snapshot. - Red on the first revision, green after the review fix: `native-session-executor.test.ts > certifies a turn completed across a session restore as a lower bound (history replay: false|true)`. It drives the restored sequence through executor completion, both live and from the event history. - New guards that pass before and after: - `keeps a restored turn's own final report when it arrives after the restore`: a complete report after resume is used, not marked lost. - `keeps an incomplete turn pending when the session resumed before it started`. - The existing `keeps an incomplete provider report pending instead of trusting placeholder zeroes` still passes. - Related suites pass: `native-usage-accounting`, `native-usage-delivery.integration`, `closed-native-receipt-accounting` (107 tests), and the usage, accounting and receipt cases in `native-session-executor.test.ts` (151 tests). Server typecheck passes. - Live, restart-chaos L1, seed 20386, `--db-pressure 4`, codex and claude, K1, head `a6e521f06c`, clean worktree: `w-20261110T104332-s20386` passed 4/4. R1–R6 and the T-oracle passed for every task. `company_spend_settled` reported `pending_runs=0` (summary 85.30823 = cost events 85.30823), with zero serialization failures under about 397k pressure updates. On master the same seed failed every task on `company_spend_settled pending_runs=1` (`w-20261110T100747-s20386`, among others). ## Risks - A restored turn without a complete report now settles at its observed usage, flagged as a lower bound, instead of after 10 minutes as "closure timed out". In both cases the final report never arrived. The money recorded is the same observed usage; only the timing and the provenance label differ. - Scope: local Runner only. The executor fallback-recorder path sees `session.resumed`. The producer-owned delivery path for remote runners (`native-usage-delivery.ts`, `isNativeUsageAccountingEvent`) still drops it, so a remote ACPX/OpenCode turn restored mid-turn still waits for the closure timeout. That is a follow-up. - No schema or persisted-format change. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with shell, file-edit and code-execution tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
|
8b3348c6ba |
fix(runner): classify Claude's rejected selected model as an unavailable model (#20513)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner agents on the Claude (ACPX) provider run with the
model the user saves on the agent
> - When the provider cannot run that model, Paperclip should classify
the run as `native_provider_model_rejected`, ask the user to choose a
model, and let Retry finish the task
> - Claude Code accepts an unknown model at session start and reports it
only on the first turn, as an AIR `request` failure with a fixed title.
The runner reported it as an unknown provider failure
> - So the run failed as `native_provider_terminal_failed`, and the task
stopped with `provider_effect_inventory_unavailable` ("Automatic
recovery stopped. Recorded work is preserved…") without naming the model
> - This pull request classifies that Claude title as an unavailable
model, the category the native runtime already turns into
`native_provider_model_rejected`
> - The benefit is that an unknown Claude model asks for a model choice
and names it, as Codex does after #20488
## Linked Issues or Issue Description
**What happened?**
Config wave `w-20261110T094430-s207-cf` on `master` (
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DottaandClaude Opus 5.5
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57def75d01 |
fix(run-log): wait for a just-written journal head instead of failing the claim (#20509)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode, run logs use the `s3_segments` store: an object byte journal whose `head.json` names the current writer > - Each run start (and each resume after a restart) claims the journal: it reads the head and publishes the next generation with a conditional write > - On an S3-compatible store with read-after-write lag, the head that the previous generation just published can read as `NoSuchKey` > - The claim then tries to create a new head, the store rejects the create because the head exists, and the run fails with `object_journal_writer_conflict` > - This pull request makes the claim wait for the head to become readable when its read said "missing" but the store says it exists > - The benefit is that a run that resumes right after a restart survives a store that shows new objects a few seconds late ## Linked Issues or Issue Description **What happened?** In restart-chaos wave w-20261110T085328-s701 (local, A1/C1, K1/K2, `--storage s3 --storage-faults ST7`), 3 of 4 tasks failed R3 with `retry_needed (adapter_failed)`. Every failed run has `failureCause: object_journal_writer_conflict` and the error "The output journal is owned by another writer" at `object-byte-journal.ts` `publish` from `object-run-log-store.ts` `begin`. All six failures happened in the ST7 window (GET/HEAD of a just-written key answers 404 `NoSuchKey` for 24 s), right after back-to-back K1 restarts. The proxy lagged 34 `GetObject` reads. **Expected behavior** A resuming run claims the run log and continues. A store that is slow to show a new object must not look like another writer. **Steps to reproduce** Claim a journal, then claim it again while the store answers `NoSuchKey` for `head.json` for a short time. The second claim fails with `ObjectJournalConflictError`. ## What Changed - `server/src/services/object-byte-journal.ts`: `claim()` reads the head and claims from it. When the head read as missing and the create fails as a conflict, it waits with backoff (250 ms doubling to 4 s, up to 60 s) and claims again from the head it then reads. A conflict on a head it could read, or a deletion tombstone, still fails at once. - `server/src/services/object-byte-journal.test.ts`: a new test hides a just-written head for three reads. Before this change the second claim fails with "The output journal is owned by another writer". After it, the claim gets the next generation and keeps the committed bytes. ## Verification - `cd server && npx vitest run src/services/object-byte-journal.test.ts src/services/object-run-log-store-tail-read.test.ts src/services/object-run-log-store.test.ts src/services/run-log-store-cancellation.test.ts src/services/run-log-store.test.ts`: 83 pass. The new test fails before the fix and passes after. - `cd server && npx tsc --noEmit -p tsconfig.json` passes. - Live: an ST7 rerun on a build with this fix follows in a comment. ## Risks - A claim on a journal that a truly concurrent first writer just created waits up to 60 s for that head and then claims after it. The caller already asserted execution authority, so it is the owner; it would claim after that head anyway once the head is readable. - A store that never shows the head makes the claim fail after 60 s instead of at once. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
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dc9971bdb8 |
fix(native): keep another server's orphan sweep off a lease its owner took back (#20508)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native run holds an executor lease on its `native_run_finalizations` row. #20474 lets the same owner take back its own lease when the lease lapsed only because the host slept. > - That take-back is safe only if every other actor that acts on a lapsed lease records its action under the coordinator row lock first. The plan `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md` lists the actors that do not. Gap 2 is another server's orphan sweep. > - The sweep reads the lease as lapsed. Later it writes the ownership-unverified marker on the run, without the coordinator lock and without a new check of the lease. If the owner wakes and takes its lease back between the read and the write, a healthy run gets the marker. > - The board then shows "automatic recovery is blocked" on a run that works. After the next host sleep, the owner cannot take its lease back, so the turn is interrupted and the user must click Retry. The owner's rule is that a task interrupted by sleep must resume by itself. > - This pull request makes the sweep write its marker under the coordinator row lock, and only while no executor lease on the run is live. > - The benefit is that exactly one side wins: the sweep marks a run whose owner did not come back, and it leaves alone a run whose owner took its lease back. ## Linked Issues or Issue Description Refs #20474 **What happened?** Two servers share one database. Server A's host sleeps, so the executor lease of its native run lapses. Server B's orphan sweep reads the lapsed lease. Server A wakes and takes its lease back (#20474). Server B then writes `native_execution_ownership_unverified` on the run that A still owns. **What did you expect?** Server B writes the marker only if the lease is still lapsed when it writes. One side wins. **Steps to reproduce** `server/src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts` holds the owner's take-back open, runs the real `heartbeatService(db).reapOrphanedRuns()` until its write waits on a lock, then commits the take-back. Before this change the run ends with `errorCode: native_execution_ownership_unverified` and the owner's next take-back fails with `native_session_lease_lost`. ## What Changed - `setRunStatusFromLive` (`server/src/services/heartbeat/run-lifecycle.ts`) has a new option `onlyWhileNativeLeaseLapsed`. It locks the coordinator row first. This is the same order that `lockNativeExecutionLeaseForReacquire` uses. The UPDATE then requires that no executor lease on the run is live. - `markNativeOwnershipUnverified` (`server/src/services/heartbeat/recovery.ts`) takes `leaseLapsed`. The orphan sweep in `recoverActiveExecutions` sets it when it read the lease as lapsed or unset. Other callers do not change. They keep the same call shape. - A new regression test, red before the fix: `server/src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts`. It also checks that the sweep still marks a lapsed run whose owner did not come back, and that the late owner stays fenced out. - `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md`: gap 2 is marked closed without the epoch design. ## Verification - `cd server && pnpm exec vitest run src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts` — red on `origin/master` (the run keeps the marker), green with this change. - `cd server && pnpm exec vitest run src/__tests__/heartbeat-native-orphan-sweep-lease-race.test.ts src/services/heartbeat/recovery.test.ts src/services/native-runtime/native-execution-lease-reacquire.test.ts src/__tests__/heartbeat-status-preserving-telemetry.test.ts` — 129 passed. - `cd server && pnpm exec tsc --noEmit -p tsconfig.json` — clean. - Restart-chaos time-fault wave on this branch: see the wave comment below. ## Risks - Low risk. Only the orphan sweep's marker write changes, and only for a run whose lease it read as lapsed. The sweep now takes the coordinator row lock before the run row. The owner's take-back uses the same order, so the two cannot deadlock. - If the owner took the lease back, the sweep now writes nothing and appends no event. The next sweep sees a live lease and defers, as before. - The other gaps in the plan (workspace finalization, shared-workspace holder detection, board copyback confirmation) do not change. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits, test runs). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
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a09093a5c5 |
fix(native): resume a run whose turn.start a restart cut off before Codex created the turn (#20507)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native Codex run sends `turn.start` to its runner, and the runner sends `turn/start` to Codex. The runner marks the start "ambiguous" before it sends the request > - A control-plane restart can kill the runner and Codex while that request is in flight. After the restart, neither journal says whether Codex created the turn, and the resumed thread has no active turn > - The restored runner then failed closed on every same-run resume with "cannot safely recover an ambiguous Codex turn start without an active replacement turn". The answer never reached the agent > - The next run on the task was refused at the runner-state fence (`prior_owner_terminal_state_indeterminate; retirement_refused=journal_commands_unsettled(turn.start.failed)`) before it asked for a runner. Retry after that run then waited forever on `process_identity_missing` for a process that never existed > - This pull request lets the runner prove from Codex's own thread history that the start never created a turn, and then resume and start the turn once. It also lets Retry continue after a run that the runner-state fence refused before launch > - The benefit is that a turn start cut off by a restart continues by itself when Codex never saw it, and a person's Retry is no longer a dead end ## Linked Issues or Issue Description **What happened?** Local restart-chaos wave `w-20261110T033426-s108`. Command: `--env local --adapters codex --workloads Q1,Q2 --faults K1 --triggers answered --tasks 4 --concurrency 2 --seed 108`. Task t03 (Q2): the answer run `92a57f50` resumed after the first restart. A second K1 restart landed 0.25 s after `session.resumed`, while its `turn.start` was in flight. Each same-run resume then failed with `PRP command session.snapshot failed: cannot safely recover an ambiguous Codex turn start without an active replacement turn`. When the prerequisite finished, the next run `0e6aa9d1` failed before launch with `runner_state_identity_mismatch: prior_owner_terminal_state_indeterminate; retirement_refused=journal_commands_unsettled(turn.start.failed)`. The accepted Retry (202) never created a run: the task stayed on `retryWait.reason=process_identity_missing` until the wave timed out (`R3:retry_no_new_run`). **Expected behavior** If Codex never created the turn, the run resumes and starts it once by itself. If that cannot be proven, a person's Retry starts a new run instead of waiting forever. **Steps to reproduce** 1. Run the wave command above on master. 2. Or run `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport-cut-turn-start.test.ts` on master (case "before" fails with the wave error). ## What Changed - Runner (`codex_provider.rs`, `provider_backend.rs`): when the restored provider state has an ambiguous turn start, no active turn before the loss, and the resumed thread has no active turn, the runner reads the newest turn of the thread (`thread/turns/list`, limit 1, metadata only, the same request `read_thread` already sends). If there is no turn, or the newest turn is one Paperclip already settled, Codex never created the turn. The runner clears the ambiguity, emits a `harness.diagnostic` with code `ambiguous_turn_start_not_created`, and restores an idle session. The old `turn.start` stays `execution_indeterminate` and is never executed again. The same-run resume then starts the run's turn once, through the existing "recovered session without an active turn" path. - Any other history (a turn Paperclip never settled, an in-progress turn, an incomplete page, a non-Codex provider) keeps today's fail-closed error. The probe runs only on this recovery path. The normal turn path does no new work before `turn.start`. - Server (`native-local-process-stop.ts`): `nativeRunNeverLaunched` also accepts a failed native run whose error is the runner-state fence refusal `runner_state_identity_mismatch: prior_owner_*` (or `legacy_prior_owner_*`). The executor throws it only while it migrates another run's saved state, before it requests a launch. The existing evidence check still applies: any launch request, identity record, `adapter.invoke` or runner event keeps the run held. Other runner-state errors (for example `authority_indeterminate`) stay held. - Fake Codex (`fake-codex-app-server.rs`): keeps the thread's turn history in a `<state-file>.turns` sidecar, so `thread/turns/list` returns history like real Codex (newest first, honours `limit`). New `--hang-turn-start <file>` holds `turn/start` "before" or "after" the thread records the turn, to model a kill in flight. - Tests: - New real-runnerd test `runnerd-codex-transport-cut-turn-start.test.ts`. A real runner and fake Codex start a turn; both processes are killed while `turn/start` is in flight. "before": the resumed run completes, the journal holds the old `turn.start` (`execution_indeterminate`) and one new completed `turn.start` with the same task text, and Codex saw exactly one more `turn/start`. "after": recovery still fails closed and no new `turn/start` is sent. - Rust: `ambiguous_turn_start_that_never_created_a_turn_recovers_and_starts_once` and `ambiguous_turn_start_that_created_an_unsettled_turn_still_fails_closed`. Both rewrite saved provider state the way a master runner wrote it, so they also cover state saved before this change. - `explicit-native-continuation.test.ts`: five new rows for the runner-state fence. Admitted: refused before launch (with and without a coordinator). Held on `process_identity_missing`: refused after a launch request, refused after a runner event, and a run that failed its own `authority_indeterminate` check. - `docs/durable-recovery.md`: describes both behaviours. ## Verification - Red/green, real runnerd: on master (the staged master runnerd), `runnerd-codex-transport-cut-turn-start.test.ts` "before" fails with `PRP command runner.drain failed: ... cannot safely recover an ambiguous Codex turn start without an active replacement turn`, the wave error. With this change, both cases pass. - Red/green, Rust: without the `provider_backend.rs` change, `cargo test -p paperclip-runner-core --test codex_provider ambiguous_turn_start_that` fails the "never created" test. With it, both pass. The full `cargo test -p paperclip-runner-core` passes. - Red/green, server: without the `native-local-process-stop.ts` change, the two "refused at the prior-owner runner-state fence" rows fail with `process_identity_missing`. With it, all 14 rows pass. - Related suites pass: 11 Runner transport files, 419 tests (`runnerd-codex-transport`, `-attachment-recovery`, `-cold-restore`, `-warm-attachment`, `-release-resume`, `-cut-attach`, `-cut-turn-start`, `-settlement`, `-suspension`, `runnerd-restart-continuation`, `runnerd-saved-continuation`); server `explicit-native-continuation`, `quarantined-task-retry` and `issue-confirm-run-stopped-routes`, 3 files, 470 tests; full `cargo test -p paperclip-runner-core`. - `pnpm --filter @paperclipai/paperclip-runner exec tsc --noEmit` and server `tsc --noEmit` pass. - Pack `contractDigest` is unchanged: `sha256:3164357d…` before and after (`scripts/contracts/contract-fingerprints.mjs`). - Live proof: the wave command above on this branch. Results follow in a comment. **No duplicate provider work.** The runner starts a new turn only when Codex's own history proves the cut-off start created nothing. The old command is never executed again (the runner refuses an `indeterminate` command). A recorded turn that Paperclip never settled keeps the run failed closed. ## Risks - Low-medium risk. The runner change runs only while it restores a session whose saved state has an ambiguous turn start and no active turn. Before this change, that run could never continue. - The proof relies on Codex recording a turn in the thread before it runs anything. If Codex accepted the request but died before it wrote the turn, the runner treats the start as not created and starts the turn once. Codex writes the user turn to the thread when it starts the turn, before it asks the model for output, so no model output or tool call is expected without a recorded turn. - If the thread's newest turn is not in the runner's settled set (for example after a provider identity epoch rollover forgot older identities), the runner keeps failing closed, as today. - **Open decision (not changed here):** when Codex did record the cut-off turn, it may have done work. This pull request keeps the run failed closed and does not replay or adopt that turn. Continuing is a person's decision through Retry or a new message. - The server change trusts the executor's own error text `runner_state_identity_mismatch: prior_owner_*`, together with the absence of every launch and runner event. A run that requested a launch keeps every stop proof. - **Runner release:** the pack `contractDigest` does not change. Local runners use the runnerd built with the app, so the fix applies with this release. - Not covered: the related `authority_indeterminate` variant in the same wave (t04, Q1) is a separate cause; its Retry already worked in that wave. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #20477, #20482 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
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0b20ea6fe9 |
fix(accounting): keep budget admission and usage handoff alive under run-row updates (#20484)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Before a run starts provider work, Paperclip reserves its budget and binds a usage recorder. Both write the run's `heartbeat_runs` row. > - Run-log appends, output progress and lifecycle events update that same row while the run prepares and streams. > - #20385 fixed this race for the standalone usage-receipt write only. Budget admission and the recorder handoff still take a repeatable-read snapshot before they lock the run row. > - Each concurrent row update makes that snapshot stale. Four retries run out with SQLSTATE `40001`, and the run ends `adapter_failed` with raw SQL as its error. > - This pull request applies the #20385 pattern (READ COMMITTED under the existing locks) to those writers and to the final dispatch gate. It also gives exhausted retries a bounded cause. > - The benefit is that busy runs start and account normally, and a remaining failure names its cause. ## Linked Issues or Issue Description Refs #20385. Builds on #20483 (bounded failure cause and `withoutSqlStatementText`). **What happened?** The restart-chaos L1 workload with `--db-pressure 4` (harness writers that update each running run row, one row per statement, like a fast stream) failed on master. In one wave, 0 of 4 tasks passed. Every first run failed in `reserveRunBudget` before spawn. In an earlier wave, a run failed in `createRunUsageRecorder`. The stack in both cases is `could not serialize access due to concurrent update` (`40001`) on the run-row `FOR UPDATE`. The board `runError` showed the full `select ... from heartbeat_runs ... for update` statement. The server log line `heartbeat execution failed` dropped the database cause. Realism: the harness writers are synthetic, but the product has the same writers on the same row. `appendHeartbeatRunEvent` increments `next_event_seq`, output progress updates `last_output_*`, and lifecycle events land while a run prepares. On a hosted database the window between snapshot and row lock is wider than locally, so a busy run reaches the same race without the harness. **Expected behavior** Budget admission and the recorder handoff commit while other writers update the run row. Budget invariants stay intact: one reservation per run, a reached hard stop still refuses work, and committed holds count against later admissions. Usage receipts are journaled once. If retries still run out, the run shows a bounded cause without SQL, and the server log records the SQLSTATE. **Steps to reproduce** Run `server/src/services/run-accounting-contention.test.ts` against the parent commit. The deterministic cases commit a real `appendHeartbeatRunEvent` after the writer's transaction checks the company and before it locks the run. Six of the eight cases fail with `40001`. ## What Changed - `reserveRunBudget` runs at READ COMMITTED. All mutable reads follow the shared admission fences, the agent `FOR SHARE` lock and the run-row `FOR UPDATE`. Exposure stays one SQL statement (hold-to-ledger atomic). The `budget_reservations_run_idx` unique index and the run lock still prevent a second hold. - The final dispatch gate's accounting phase (`dispatchResolvedInteractionIfCurrent` through `withIssueThenRunLocks` in `run-dispatch/adapters/postgres.ts`) runs at READ COMMITTED. Its ownership phase already read the same staleness facts at READ COMMITTED under the same issue and run locks. Retry promotion and stale-run cancellation keep their repeatable-read snapshot. The first L1 proof wave found this writer exhausting `40001` once the other three were fixed. - `createRunUsageRecorder` runs its receipt-source handoff and its capture-failure fence at READ COMMITTED. Both lock the run row first, the same as `persistUsageReceipt` after #20385. - `withOperationAccountingTransaction` raises `AccountingContentionError` when retries run out. It has a bounded message, `code` keeps the SQLSTATE (`40001`/`40P01`), `cause` keeps the database error, and a warning logs both. - `failRun` shows that bounded message. The code stays `adapter_failed`, so chat and recovery retry paths still apply. #20483's `failureCause` records `40001`. All other SQL text handling comes from #20483 (`withoutSqlStatementText`), unchanged here. - `doc/DATABASE.md` documents the isolation choice and the failure contract. ### Inventory of REPEATABLE READ / SERIALIZABLE transactions that write run-scoped rows | Writer | Status | Notes | | --- | --- | --- | | `persistUsageReceipt` (`usage-receipts.ts`) | Fixed in #20385 | READ COMMITTED under the run lock. | | `reserveRunBudget` (`budget-reservations.ts`) | Fixed here | Seen in waves (`budget-reservations.ts:90`). | | `createRunUsageRecorder` handoff (`usage-receipts.ts`) | Fixed here | Seen in waves (`usage-receipts.ts:572`). | | `createRunUsageRecorder` capture-failure fence (`persistFailure`) | Fixed here | Same shape: run lock first, runs mid-stream. | | Native finalizer `claimCoordinator` (`native-run-finalizer.ts`) | Safe | A default READ COMMITTED transaction with `FOR UPDATE` on the coordinator row. It cannot raise `40001`. The wave errors there were `native_finalization_missing`, a symptom of the failed reservation (no coordinator existed yet). | | Final dispatch gate, accounting phase (`dispatchResolvedInteractionIfCurrent`) | Fixed here | Seen in proof wave `w-20261110T075857-s20386` (runs `140ddb10`, `c028c6c4`, `fea0ee5a`). Its ownership phase already used READ COMMITTED under the same locks with the same staleness reads. | | Retry promotion and stale-run cancellation (`promoteOrCancelDueRetry`, `cancelStaleQueuedRun`, same lock helper) | Follow-up | Kept at repeatable read: `loadGateFacts` combines wakes, comments, dependencies, tree holds and repair state in one decision. They act on queued or scheduled runs, not streaming ones. Not seen failing in waves. If retries run out, they now fail with the bounded cause. | | Run settlement `accountRunCost` (`run-cost-accounting.ts`) | Follow-up | Seen with `40001` in a wave log. Leaves the run pending; `reconcileRunCosts` retries it durably. Multi-aggregate (coordinator, receipts, images, closure). | | Tool cost events (`paperclip-runner-tool-authority.ts`, `costs.ts`) | Safe | Insert `cost_events` only; the run row is referenced, not locked or updated. | | Budget enforcement and evaluation (`budgets.ts`), billing reconciliation, accounting-integrity repair | Safe | Lock policy, invoice or company rows, not a streaming run row. Run reads are plain selects. | | Browser use, decisions, prompt-injection, fast responses | Safe | Write their own invocation/reservation rows, not `heartbeat_runs`. | | Read-only RR snapshots (`withAccountingReadSnapshot`, idle-sleep, tool gateway, customer success, `routes/decisions.ts`) | Safe | Read only, or no run-scoped writes. | ## Verification - Red on the parent commit, green on this branch: `server/src/services/run-accounting-contention.test.ts` (real embedded PostgreSQL). - `reserveRunBudget > reserves once when run events commit between its company check and its run lock` (red: `40001`) - `reserveRunBudget > reserves every run while back-to-back writers update the run row` (red: `40001`) - `reserveRunBudget > counts every committed hold, so successive admissions never exceed the budget` (red) - `reserveRunBudget > still refuses a run once the hard stop is reached` (red: `40001` instead of `409`) - `createRunUsageRecorder > binds its receipt source when run events commit between its company check and its run lock` (red: `40001`; green asserts the spooled receipt is journaled exactly once) - `createRunUsageRecorder > binds while back-to-back writers update the run row` (red: `40001`) - `reserveRunBudget > never creates a second reservation for one run when two dispatches race` (invariant; passes before and after) - `final dispatch gate > admits and hands off a reserved run when run events commit between its company check and its run lock` (red: `AccountingContentionError` after 4 × `40001`) - `createRunUsageRecorder > persists its capture-failure fence once when run events commit between its company check and its run lock` - `final dispatch gate > admits while back-to-back writers update the run row` (red: `40001`) - `exhausted retries > fail with a bounded, SQL-free cause that keeps the SQLSTATE` (new contract) - `run-completion.test.ts > saves a bounded cause and keeps the retryable generic code when accounting retries are exhausted` (saved code, message and `failureCause`, and log fields, through `failRun`) - Related suites pass: `usage-receipts-read`, `admission-independent-of-cleanup`, `budget-live-attempts`, `idle-accounting-work`, `budget-enforcement-scoping`, `closed-native-receipt-accounting`, `budget-evaluation-work`, `run-dispatch/adapters/postgres`, `heartbeat/run-completion` (all 126 run-completion cases pass; its `afterAll` embedded-PostgreSQL teardown exceeded 30 s on this loaded host, the known local flake). - `pnpm --filter @paperclipai/server typecheck` passes. - Latency of `reserveRunBudget` on the normal path (no contention, embedded PostgreSQL, 350 measured reservations per run, 3 runs each): before p50 14.7 / 15.0 / 18.6 ms, p95 25.6 / 31.4 / 39.4 ms; after p50 14.2 / 14.0 / 16.6 ms, p95 29.7 / 24.0 / 29.3 ms. No added latency: the statements are the same, only the isolation level changes. Under contention it removes the retry backoff. - Live restart-chaos L1 waves (`--seed 20386 --db-pressure 4`, codex and claude, K1): - Master before this change: `w-20261110T050818-s20386`, 0/4. Every first run failed in `reserveRunBudget` with `40001`. - Head `90530789b0` (first three writers fixed): `w-20261110T075857-s20386`, 2/4. Both codex tasks passed. Both claude failures (t02, t03) trace to the dispatch gate, now fixed. Those runs already showed the bounded cause, with no SQL on the board. The failure was logged with `sqlState` 40001. No `reserveRunBudget` or recorder `40001` remained. - Head `d5ed21926f` (dispatch gate fixed): `w-20261110T090531-s20386`. All 4 tasks reached done with no retry and R1–R6 passed. There were no failed runs and zero `40001` in the server log, under 310k pressure updates. Each task still failed the T-oracle `company_spend_settled` with `pending_runs=1`. That pending run is t02's continuation run `601ae80a`, cancelled before provider work as `issue_terminal_status`, whose accounting debt was not yet settled when graded about 15 s later. It is not a contention failure. Caveat: I edited the worktree during this wave (`worktree_changed_mid_wave`), so a clean wave on the final head follows. - Final head `9f1c480717`, clean worktree: `w-20261110T094417-s20386`. All 4 tasks reached done with no retry, and R1–R6 passed for each. There were no failed runs and zero serialization failures in the server log, under about 523k pressure updates. Each task still fails only the T-oracle `company_spend_settled` (`pending_runs=1`). It is the same cancelled pre-provider continuation run (`issue_terminal_status`), whose accounting debt was still unsettled at grading. That is a separate settlement-timing follow-up, not database contention. Master was 0/4 on the same seed. ## Risks - READ COMMITTED gives each statement its own snapshot. Admission reads policy, scope and exposure in separate statements. The shared company/project fences and the agent share lock exclude concurrent pause and policy edits, and exposure stays one statement, so each read is at least as fresh as the old snapshot. - Concurrent admissions of different runs stay best-effort, as `doc/SPEC-implementation.md` already states ("concurrent starts can exceed the same observed balance"). This change does not widen that window: each statement snapshot is newer than the old transaction snapshot. It does not add a company mutex. - A run that fails after exhausted retries now records `accounting_contention` instead of `adapter_failed`. Retry rules that key on `adapter_failed` spawn-like messages did not match this failure before, so no automatic retry changes. - No schema, migration or persisted-format change. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with shell, file-edit and code-execution tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude
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82abb3ea04 |
fix(native): classify a Codex API-key unknown model as a model rejection (#20488)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Native runner agents run on a provider (here Codex) with a model the
user saves on the agent
> - When the provider rejects that model, Paperclip should classify the
run as `native_provider_model_rejected`, ask the user to choose a model,
and let Retry finish the task
> - Paperclip recognized only the ChatGPT-account rejection (a 400 JSON
envelope). With API-key auth, Codex returns a different terminal error
for an unknown model
> - So the run failed as a generic `adapter_failed` ("Native session
failed"), and recovery opened a reconciliation incident ("Recovery
needed") for a turn that never did any work
> - This pull request recognizes the real API-key shape, bound to the
configured model, and names the rejected model on the task
> - The benefit is that the task asks for a model choice instead of a
reconciliation, and Retry completes the task after the user picks a
valid model
## Linked Issues or Issue Description
**What happened?**
The restart-chaos config fault CF3 `model_id` saves a Codex agent with
the model `chaos-missing-model-<nonce>`. The run stays "running" for
about 60 seconds, then fails with `errorCode: adapter_failed`, "Native
session failed". The task shows "Recovery needed", cause
`native_continuation_requires_reconciliation`. The grader fails as
`CF3/model_id:actionable_message` (waves `w-20261110T061914-s206-cf` t01
and `w-20261110T053831-s205-cf` t02).
Root cause: the wave runs Codex with an OpenAI API key. I drove the
bundled `codex app-server` (0.160.0) directly with an unknown model:
- With API-key auth, Codex retries the Responses API 404 ten times
(about 59 s), then fails the turn with `{"message":"unexpected status
404 Not Found: The model \`<id>\` does not exist or you do not have
access to it., url: https://api.openai.com/v1/responses, cf-ray: …,
request id:
req_…","codexErrorInfo":{"httpConnectionFailed":{"httpStatusCode":404}}}`.
- With ChatGPT auth, the turn fails in about 3 s with `message` =
`{"type":"error","status":400,"error":{"type":"invalid_request_error","message":"The
'<id>' model is not supported when using Codex with a ChatGPT
account.","code":"model_not_found"}}`. Paperclip already classified this
one.
`createNativeProviderFailureObservation` parsed only the JSON envelope,
and the runner's provider-failure category for an HTTP 404 is `unknown`.
The terminal therefore stayed unclassified.
**Expected behavior**
The run is `native_provider_model_rejected`, the task shows `userAction:
"choose_model"` and names the model, no reconciliation incident opens,
and Retry completes the task after the user picks a valid model.
**Steps to reproduce**
`node cli/node_modules/tsx/dist/cli.mjs
tests/restart-chaos/config-wave.ts --faults CF3 --adapters codex
--references model_id --tasks 1 --concurrency 1 --restarts K2 --seed
206` on `master` (with `OPENAI_API_KEY` set).
**Paperclip version or commit**
`master` at
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DottaandClaude Opus 5.5
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8a8abdb7b9 |
fix(recovery): retire the ledger row of an abandoned workspace save (#20502)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Remote workspaces save their files to object storage. Each save
writes a row in the `execution_workspace_snapshots` ledger. The row
stays `pending` until the upload publishes it.
> - A restart that kills the server during a save leaves the save
unfinished. The ownership reconciler settles the save operation as
`remote_workspace_save_abandoned`. It does not touch the ledger row.
> - The row then stays `pending` for good, and its `updated_at` never
moves. The `remote_snapshot_ledger` ownership kind has no settle path,
so every later ownership report flags it as an `I2_settled` violation.
> - This pull request retires that row to a terminal state once no retry
can reopen its save, and gives `remote_snapshot_ledger` a settle path.
> - The benefit is a clean ownership report after a restart during a
save, and a ledger that tells the truth about uploads that will never
finish.
## Linked Issues or Issue Description
**What happened?**
A Daytona R1 × K1 restart-chaos wave (`w-20261110T071047-s7101`,
`--storage s3`) killed the server during the initial workspace save of 3
runs. The save operations ended `failed` /
`remote_workspace_save_abandoned`. Their `execution_workspace_snapshots`
rows stayed `pending` permanently, with no object key and no upload
attempt. The workspaces later committed newer snapshots (authority epoch
3, row epoch 1). Every ownership report afterwards flagged 3
`I2_settled` violations of kind `remote_snapshot_ledger`.
**Expected behavior**
When a save is abandoned and its run and writer epoch have ended, its
pending ledger row reaches a terminal state, and the ownership report
shows no `I2_settled` violation for it.
**Steps to reproduce**
1. Run a Daytona R1 × K1 wave with `--storage s3` and K1 at about +65 s,
so the restart lands inside the initial remote workspace save.
2. Let the runs finish or fail and the workspace commit a newer
snapshot.
3. Read `execution_workspace_snapshots`: the abandoned rows are still
`pending`. The server log shows `I2_settled` violations for
`remote_snapshot_ledger` on each report.
**Paperclip version or commit**
master at
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DottaandClaude
|
1402e92d1f |
fix(native): take back an executor lease that lapsed only because the host slept (#20474)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A native run holds an execution lease on its `native_run_finalizations` row. The lease lasts 20 minutes, and the owner renews it every 5 minutes. > - When a laptop sleeps for longer than the lease, the wall clock and the database clock move past `lease_expires_at`. The server's monotonic timers barely move. > - After the wake, the next renewal finds its own lease expired. It interrupts a healthy turn with `native_session_lease_lost`, and the user must click Retry. Nobody else took the lease. > - Several background consumers act on an expired lease without changing its owner. So expiry alone cannot simply be ignored for the owner. > - This pull request makes takeover explicit. The same owner can take back its own lapsed lease only when no other actor has recorded anything on the row or the run. > - The benefit is that a run interrupted only by host sleep continues with no Retry. A real takeover still fences the late owner out. ## Linked Issues or Issue Description **What happened?** The restart-chaos time fault TM2 stops the server and runner tree and ages every database time by one hour, as a stand-in for a laptop that slept. After the thaw, the next 5-minute renewal of the native execution lease found the lease expired. It interrupted the turn (`turn.interrupted` at 300 s, `native_session_lease_lost`). The failure settlement was then refused with the same code, and the UI showed "Couldn't finish this attempt" with Retry. The owner, attempt, boot and pid were unchanged. Evidence: wave `w-20261110T051535-s304` t01 (TM2, 1 h) failed R3. t02 in the same wave (TM1, a 113 s server-only freeze with no clock jump) passed, so the failure follows the clock jump and not the pause. **Is this a harness artifact?** No. TM2 ages the stored rows, and a real sleep moves the clock forward. Both produce the same comparison: a stored `lease_expires_at` is earlier than `clock_timestamp()` after the wake. The server's renewal timer and local deadline use the monotonic clock. On macOS and Linux that clock does not count suspended time, so they do not notice the sleep in either case. The first database check after the wake is the renewal predicate `lease_expires_at > clock_timestamp()`, and it fails in both cases. **Expected behavior** A run whose lease lapsed only because time jumped, and that no other actor claimed, keeps running and finishes without Retry. **Steps to reproduce** `node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/main.ts --env local --adapters codex --workloads B5 --faults TM2 --time-age-hours 1 --concurrency 1 --tasks 2 --seed 304` with the harness from #20458. Refs #20458, #20500 ## What Changed - `native-execution-lease.ts`: add `nativeExecutionLeaseHeldCondition` and `lockNativeExecutionLeaseForReacquire`. A lease is held when it is live. For a local run, it is also held when it lapsed and is untouched. "Untouched" means all of these are true: - the claimed generation matches; - the phase is `observed` and no result is accepted; - `recovery_state`, `recovery_request_id`, `failure_code` and `next_attempt_at` are null; - `controller_host_hash` is not the board's attested-stopped stamp; - the run is still `running`, without the ownership-unverified error code and without a `nativeStartupCleanup` marker. - The caller's WHERE already matches the owner token, attempt and controller boot/pid/start. - The lock helper locks the coordinator row. If the lease lapsed, it also takes a share lock on the run row. The predicate then reads the latest committed run, and an in-flight run write cannot slip past it. - Renewal (`startNativeSessionExecutionLeaseRenewal` / `renewNativeSessionExecutionLease`) takes back a lapsed lease when the executor passes its claimed generation. Remote targets never do. A deadlock (40P01) on that rare path retries at the next tick, as a statement timeout already does. - `native-session-executor.ts`: the executor passes its generation to renewal. Failure settlement and the final release use the same lock and condition. After a result is accepted, a lapsed lease can only be relinquished (set to null), never renewed, because workspace finalization may act on it. - New `native-execution-lease-reacquire.test.ts` (embedded Postgres, 24 cases). - `doc/plans/2026-11-09-explicit-native-lease-claim-tokens.md`: step 2, which adds explicit claim tokens for the consumers this PR does not yet move. Consumer inventory (readers of `native_run_finalizations.lease_expires_at` that can act on a lapsed lease): - Restart recovery and takeover (`claimNativeRestartRecoveries`): claims first. It writes `recovery_state`, `lease_owner` or `controller_*` under the coordinator lock. - Finalizer and cleanup claims: claim first (`lease_owner`). - Failed-run owner release, environment settlement, observed-workspace preservation, retained-session cleanup: require a terminal run status, `committed`, or a recovery state. The rule refuses all of these. - Finalization reconciler, live recovery: require `retryable_failure`, a field the rule checks. - Board controller-stopped confirmation: writes `controller_host_hash`, which the rule checks. - Startup cleanup promotion: writes the run's `nativeStartupCleanup` marker, which the rule checks. It also applies only to runner-task leases. - Another server's orphan sweep: writes the run's ownership-unverified code. The rule checks it when the marker lands first. The reverse order is deferred (see Risks). - Workspace finalization copyback: acts on a lapsed post-result lease without a coordinator write. Post-result leases are therefore never renewed (deferred to step 2). - Accepted-result and token lease settlement, checkpoints, cancellation delivery, admission and the other readers: act on live leases only, or are read-only. ## Verification - `cd server && npx vitest run src/services/native-runtime/native-execution-lease-reacquire.test.ts` passes (24/24) on this branch. With the source files from `origin/master`, 5 fail, including "lets the same owner take back a lease that lapsed untouched" and "renews from the shared timer after the sleep instead of interrupting the turn". - (a) The owner takes back its lapsed lease when no other actor claimed it. Also covered: the shared 5-minute timer, rows saved by the previous release, and the post-result relinquish. - (b) 14 cases where a consumer claimed first fence the owner out and leave the row unchanged. A release over a recorded recovery claim is refused. A different boot (a deploy mid-run), a different generation, a missing generation and a remote target are refused. - (c) Races have exactly one winner: a claimant and the owner lock the coordinator in each order, an in-flight run status write races the owner, and 8 simultaneous starts each have one winner. - Existing suites pass: `native-execution-lease.test.ts`, `native-session-executor.test.ts`, `native-runner-restart-recovery`, `native-runner-restart-lease-renewal`, `native-runner-restart-preparation` and `native-runner-restart-checkpoint-cost` integration tests. - Live proof: `B5 × TM2 --time-age-hours 1 --tasks 2 --seed 304` with `--server-from` this branch. Wave `w-20261110T083444-s304` passed 2/2, with no Retry and no `native_session_lease_lost`. - Both runs ran past the 300 s renewal after the one-hour aging, at the exact point where `origin/master` fails. t01 ran 310 s and t02 ran 319 s. Each was a single run that succeeded. - The harness used the aging exclusion from #20500 (merged): process start identity is not aged. Without that exclusion, TM2 also moves `controller_process_started_at`. The live owner then fails its identity check, which a real sleep never causes. An earlier wave on the unpatched harness, `w-20261110T072106-s304`, failed 0/2 for that reason only. ## Risks - Previous release: no persisted shape changes and no migration. Rows saved by the previous release have the same columns, and a null `controller_host_hash` is accepted. A deploy that lands mid-run cannot take back the old server's lease, because the boot and pid differ. - On the normal path, a live lease takes the same single coordinator lock as before. The run share lock is taken only after a lapse, and nothing is added before `turn.start`. - Deferred to step 2 (see the plan): - The orphan sweep of another server process can read the row before the owner takes the lease back and write after. That run would carry an ownership-unverified error while it is live. - Shared-workspace holder detection reads a silent run with lapsed leases as gone. - Post-result leases are not renewed. - Remote leases are unchanged. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used in Claude Code with tool use (shell, file editing, sub-agent code audit). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [ ] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
|
a14ae9b5c9 |
fix(workspaces): name a failed workspace setup command on the task page (#20478)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before an agent starts, Paperclip prepares the task workspace and runs the project's configured setup commands (for example the workspace provision command) > - When that command fails, the run fails as `setup_failed`, and the task stops with a Retry > - The task page shows only "Failed" and a generic recovery notice. The real error (the command, its exit status and output) is visible only on the run page > - The user cannot see from the task which setting is broken or what to change > - This pull request records a bounded, named cause for a failed setup command and shows it on the task page > - The benefit is that the task names the broken setting and what to change, and classification, retry and recovery stay the same ## Linked Issues or Issue Description **What happened?** The restart-chaos config fault wave CF1 sets a project `workspaceStrategy.provisionCommand` to `bash ./scripts/provision-worktree.sh`, a script that does not exist. The run fails as `setup_failed` with `Execution workspace provision command "bash ./scripts/provision-worktree.sh" failed: bash: ./scripts/provision-worktree.sh: No such file or directory`. The task page shows "Failed" and "Paperclip automatically retried continuation … still has no live execution path". The grader fails the task as `CF1/provision_command:message_only_in_run_detail`. **Expected behavior** The task page names the failed setup step, the configured command, its exit status and a short tail of its output, and says what to change. Retry behavior stays the same. **Steps to reproduce** `node cli/node_modules/tsx/dist/cli.mjs tests/restart-chaos/config-wave.ts --faults CF1 --adapters codex --tasks 2 --concurrency 2 --restarts K1,K2 --seed 204` on `master`. **Paperclip version or commit** `master` at |
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|
DottaandClaude
|
52b906b112 |
fix(native): let Retry continue after a run that failed before native selection (#20482)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before Paperclip starts a new message or a Retry after a failed native run, it proves that the run's local process stopped > - A native run can fail before native selection, for example when a budget reservation is refused or a preparation query fails. That run never had a runner, a native session or a process ID > - The stop gate still waited for a stop record of that process. Retry returned 202, then the task stayed on `retryWait.reason=process_identity_missing` and no run started > - Native selection writes the run's native issue, native session, runner instance and coordinator in one transaction. A runner launch needs all of them, and the executor records `native.process_start_requested` before any spawn > - This pull request treats a settled run with none of that evidence as having nothing to stop > - The benefit is that Retry and new messages continue after a failure that happened before the agent started ## Linked Issues or Issue Description **What happened?** In local restart-chaos database-load wave `w-20261110T050818-s20386`, all 4 tasks failed before any agent process started. One example is t01, run `f7e2ee55`. A preparation query failed, and the run ended `adapter_failed` with no native session, no runner instance, no process ID and no launch event. Retry returned 202. For 16 or more minutes, `retryWait` then stayed on `process_identity_missing` and no run started. **Expected behavior** If the previous run never had a process, there is nothing to verify, so Retry and new input continue. **Steps to reproduce** 1. Make a native run fail before native selection (for example, a refused budget reservation or a failed query). 2. Click Retry, or send a message. Before this change, the input waits on `process_identity_missing` and does not continue. ## What Changed - `native-local-process-stop.ts`: `nativeRunRefusedBeforeLaunch` (renamed `nativeRunNeverLaunched`) now also proves "never launched" for a settled native run in this state: - no process ID and no process group; - no native issue, no native session and no runner instance (native selection writes them together). A coordinator row requires the native issue by foreign key, so the native-issue check also rules out a coordinator; - no launch request, no identity record, no `adapter.invoke` and no runner-authored event (any event with a source event ID). The existing case, a run that the cleanup quarantine refused before launch, does not change. - `explicit-native-continuation.test.ts`: the guard "failed for another reason without a process record" now separates real pre-selection failures from the shapes that must stay held. - Admitted: a run that failed before it requested a launch. This case is red on `master`. - Still held on `process_identity_missing`: a run that has a runner event, a run with a prepared native session, and a run with a coordinator, for `failed`, `timed_out` and `interrupted` runs. A `timed_out` run that failed before launch is admitted. The chat suite's `unreconciled` case (a native issue and phase, no session) also stays held. ## Verification - Red/green: on `master`, `routes input after a run failed before it requested a launch` fails with `process_identity_missing`. It passes with this change. - `vitest run src/services/explicit-native-continuation.test.ts src/services/quarantined-task-retry.test.ts src/__tests__/issue-confirm-run-stopped-routes.test.ts`: 3 files, 462 tests pass. This includes every existing "keeps the hold for missing_process" and historical-run case. - Server `tsc --noEmit` passes. ## Risks - Low risk. The new proof needs structural evidence that no runner could exist: no native selection and no launch or runner event. A run that reached native selection, or that has any launch evidence, keeps every existing stop proof. - The proof does not depend on the build: a runner from any build needs the native session and the runner instance. Saved runs from older builds that were selected keep those fields, so they stay held exactly as before. - Relates to #20477, which fixes the restart window inside an answer run's attachment. This pull request is independent of it. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), via Claude Code with tool use (shell, file edits, test execution). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Refs #19829 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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DottaandClaude
|
1e13c58a4e |
fix(heartbeat): name the cause of generic adapter failures and keep SQL text off the board (#20483)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Heartbeat run settlement records why a run failed, and the board shows that record. > - Runs that fail without a named code settle as `adapter_failed` (or `setup_failed`) with no cause. > - A user, an operator, and the restart chaos harness cannot tell what went wrong from such a run. > - Some run errors also show raw SQL statement text to users. > - This pull request records a bounded `failureCause` code for generic failures, shows it on the board, and keeps SQL text out of run errors. > - The benefit is that a generic failure now names its cause, for example "adapter failed (40001)", without leaking messages, SQL, or secrets. ## Linked Issues or Issue Description Refs #20385 (the nested-cause extraction this change reuses). Related: #20421 (restart chaos universal checks U1-U4). **What happened?** The restart chaos audit of 79 saved waves found 30 failed runs with `errorCode: "adapter_failed"` and a null or generic error. Every U3 ("diagnosable") warning was `adapter_failed`. Nobody could tell what failed. Some board run errors also showed raw SQL statement text from wrapped database errors (Drizzle `Failed query: ... params: ...`). **Expected behavior** A run that fails with a generic code names a short, safe cause. The board shows the cause next to the stop reason. Run error text never shows SQL statements or their parameters. **Steps to reproduce** Make an adapter throw a wrapped database error (an `Error` whose nested `cause` has `code: "40001"` and whose message has a Drizzle `Failed query:` statement). Before this change, the run settles as `adapter_failed` with no cause, and `heartbeat_runs.error` contains the SQL statement and parameters. The new tests in `server/src/services/heartbeat/run-completion.test.ts` reproduce this. ## What Changed - Runner: move the #20385 event-commit cause extraction into `safeErrorCauseCode` (`packages/paperclip-runner/src/control-plane/safe-error-cause.ts`) and export it. The Runner's own diagnostics use the same function, unchanged in behavior. - Shared: add the `failureCause` contract (`packages/shared/src/run-failure-cause.ts`): one `[A-Za-z0-9_.:-]` token of at most 80 characters, `normalizeRunFailureCause`, `readRunFailureCause`, and `withoutSqlStatementText`. - Server: add `server/src/services/heartbeat/run-failure-cause.ts`. Settlement records `resultJson.failureCause` only when the code is generic (`adapter_failed`, `setup_failed`). `errorCode` stays the same. - Thrown errors (`failRun`, `failRunSetup`): `provider_http_<status>`, else `provider_<category>`, else the first safe code in the error and up to three nested causes (`40001`, `ECONNRESET`), else the error class name, else `unknown_error`. - Adapter results without a code (`completeRun`): the error family, `signal_<name>`, `process_cancellation_failed`, `exit_code_<n>`, `adapter_reported_error`, or `unknown_error`. - The failure log lines (`heartbeat execution failed`, `heartbeat execution setup failed`, and a new `heartbeat run failed` warning for generic adapter results) include `failureCause` and `errorCode`. - Server: replace SQL statement text in run error text with "Database query failed (<cause>)" at all three settlement paths, including the cancelled branch. The execution blocker's `runError`, the attention inbox (failed-run excerpt and metadata), and continuation summaries apply the same replacement on read, so older rows also stop showing SQL there. - Server: Retry admission and failed-preparation replay accept only a closed set of `resultJson` keys. `failureCause` is added to each of those lists (`task-retry.ts`, `chat-channels/failed-run-retry.ts`, `cancelled-native-startup.ts`, `fresh-workspace-continuation.ts`). It is a diagnostic code with no execution or replay authority, so a failed-preparation run stays retryable. - Server: `runsForIssue` returns a validated top-level `failureCause`. It is null for older rows, non-string JSON values, and malformed values. - UI: `RunForIssue.failureCause`; `IssueRunLedger` shows "adapter failed (40001)". Older runs keep "adapter failed". The Storybook run-ledger fixture has a failed run with a cause. - Restart chaos harness: run samples keep `failureCause`. U3 treats a generic code with a specific `failureCause` as diagnosable. A bare `Error`, `unknown_error`, or the no-code fallback `adapter_reported_error` still counts as vague. U3 stays a warning. - Docs: `doc/run-log-events.md` and the harness README describe the field and the SQL replacement. ## Verification - Red before the fix: the four new `run-completion.test.ts` cases failed against `origin/master`'s `run-completion.ts` (no `failureCause`, SQL text in `error`). - Green: - `server/src/services/heartbeat/run-completion.test.ts`: all tests passed (real embedded PostgreSQL). New cases cover a nested `40001` three levels deep for execution and setup failures, SQL and a secret parameter absent from `error` and `resultJson`, the bound (an 81-character code and a SQL "code" fall back to the class name), `exit_code_137` for a code-less adapter result, a cancelled result with SQL text, no cause for a named code, and the log line. On this loaded host the suite's `afterAll` database teardown hit its 30 s hook limit after every test passed (the known local teardown limit, also seen in #20385). CI runs the suite. - `server/src/services/heartbeat/run-failure-cause.test.ts` (4), `server/src/__tests__/activity-service.test.ts` (recorded, legacy, malformed, overlong, boolean, and number cause projections), `server/src/__tests__/issue-continuation-summary.test.ts` (legacy SQL row). - `packages/shared/src/run-failure-cause.test.ts` (6), `ui/src/components/IssueRunLedger.test.tsx` (21), restart chaos `universal.test.ts` and `observer.test.ts`. - `packages/paperclip-runner/src/control-plane/durable-prp-control-plane.test.ts`: 207 passed (the stall-diagnostic cases still read `40001` and `ECONNRESET`). - Typecheck: shared, runner, server (all layers), UI, restart chaos harness. `pnpm check:token-gates`: all gates clean. - `pnpm verify` returned exit 2 (global doc input changed); required CI supplies broad coverage. - CI on `6295f8d` found that the new key made failed-preparation runs ineligible for Retry (`chat-channels.integration.test.ts` saved board-message Retry got 409; `workspace-recovery-preparation-dispatch.test.ts` dispatched 0 Retries). Both reproduced locally and pass after the allowlist fix, with the other 459 Retry cases in `chat-channels.integration.test.ts` and all 25 in `workspace-recovery-preparation-dispatch.test.ts`. - No chaos waves were run. Storybook was not opened in a browser; the fixture typechecks and the label is covered by the UI test. ## Risks - Low risk. `errorCode` values do not change, so retry, recovery, and comparison logic is unaffected. - No schema change and no migration. `failureCause` is a new optional `resultJson` key. Rows saved by the previous release have no key and render as before; a new row read by an old server is ignored. - The SQL replacement only acts on a Drizzle `Failed query:` marker, or on `$n` placeholder text with a statement shape. Ordinary error text does not change. When it acts, it also drops the text after the statement. - Code that checks `resultJson` against a closed key list must allow `failureCause`. I found and updated the four lists on the Retry path; a list I missed would refuse a Retry for a run with a generic failure. - This is the run log / instance database path. It adds no Telemetry event. - The server failure log line still logs the raw error message (unchanged behavior); only the board-facing text is changed. ## Model Used - Claude Opus 5.5 (Anthropic), model ID `claude-opus-5-5`, used through Claude Code with tool use (shell, file editing) and code execution for tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude <noreply@anthropic.com> |
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Devin FoleyandPaperclip
|
53c9be8d41 |
Reuse identical captured workspace archives (#20476)
Reuse the current committed snapshot when a fresh capture matches its manifest and plaintext archive hash and size. Preserve the original encryption binding and verify each new run receipt for recovery, concurrent replay and storage request statistics. Verified with 338 focused save and recovery tests, server typecheck and build, all final-head CI checks, and Greptile 5/5. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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DottaandClaude
|
233f615644 |
fix(heartbeat): resume legacy runs a graceful shutdown stopped before dispatch (#20461)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - The heartbeat service runs agent turns and recovers them after a
server restart
> - A graceful restart can stop a legacy run (for example a `process`
adapter agent) while the run is still in setup, before the adapter
starts
> - That run was parked with `legacy_execution_requires_reconciliation`,
so automatic recovery stopped
> - A `process` or `http` adapter cannot continue that hold through
Retry, so the accepted Retry waited forever and the task stayed blocked
> - This pull request proves "no adapter work started" for that case and
resumes the run automatically
> - The benefit is that a restart during setup no longer strands the
task, and Retry starts a run for holds that an older server saved
## Linked Issues or Issue Description
**What happened?**
The restart-chaos harness ran workload Q3 (a board approves an agent's
app action late) with a `process` adapter agent. A graceful restart
(fault K2) fired right after the approval. The agent's follow-up run was
interrupted with `server_shutdown_interrupted` 0.2 s after it started,
while it was still in setup. Automatic recovery stopped with
`legacy_execution_requires_reconciliation`. The board clicked Retry. The
server accepted the Retry (HTTP 202), but no run started. The task
showed "Retry is waiting for execution checks" (`retryWait.reason =
execution_recovery`) forever.
**Expected behavior**
A run that a graceful shutdown stops before any adapter work must resume
automatically. An accepted Retry must start a run.
**Steps to reproduce**
1. Run a `process` adapter agent on a task.
2. Send SIGTERM to the server while the run is still in setup (before
the adapter starts).
3. Restart the server. The task is blocked with
`legacy_execution_requires_reconciliation`.
4. Click Retry. The request is accepted, but no run starts.
**Paperclip version or commit**
master at
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DottaandClaude Opus 5.5
|
693de27c90 |
fix(storage): wait out expired or rotated S3 credentials and re-resolve the key (#20456)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - In cloud mode, run logs, provider traces, attachments and remote workspace snapshots go to S3 > - The server uses the default AWS credential chain, and real keys expire or rotate while runs are in flight > - #20299 made runs wait out a storage outage, but a 403 `ExpiredToken`, `InvalidAccessKeyId` or `SignatureDoesNotMatch` was a permanent `adapter_failed` > - The SDK also caches a key until its stated expiration (forever for a key with none), so a rotated key was never picked up > - This pull request treats credential rejections as a storage wait and re-resolves the key from the credential chain after a rejection > - The benefit is that runs survive key expiry and rotation without failed attempts or a manual Retry ## Linked Issues or Issue Description Refs #20299 (storage outage wait). Harness that found this: #20455. **What existing behavior does this improve?** Runs wait out S3 outages (5xx, timeouts, resets) but fail at once when the store rejects the server's credentials. **Subsystem affected** server storage (S3 provider) and heartbeat run completion. **Current behavior** Restart-chaos wave w-20261110T041556-s501 (`--storage s3 --storage-faults ST5`): one 41 s window of 403 `ExpiredToken` failed 4 of 6 tasks. Each run ended `adapter_failed` with "The provided token has expired.", and the automatic retries failed within one second, so the tasks needed a board Retry (R3 `retry_did_not_complete`). **Proposed behavior** A credential rejection is a transient infrastructure condition. Critical-path storage calls wait it out like an outage, and a run that stops on it gets the `storage_unavailable` wait retry. After each rejection the S3 client re-resolves its key with `forceRefresh`, so the next attempt signs with a rotated key. The run error names the credentials. If they never come back, the exhausted-wait message tells the operator to check the storage service and its credentials. **Reason and benefit** Expiring or rotated keys are normal in cloud deployments. They must not fail work. ## What Changed - `storage-unavailable.ts`: `ExpiredToken`, `ExpiredTokenException`, `TokenRefreshRequired`, `InvalidToken`, `InvalidAccessKeyId`, `InvalidClientTokenId` and `SignatureDoesNotMatch` answered by the store with 400/403 count as storage unavailable. `AccessDenied` and a credential chain that cannot load any key (`CredentialsProviderError`) stay permanent. New credential-specific run message; the exhausted message also names credentials. - `s3-credential-refresh.ts` (new): S3 client middleware that calls the client's credential provider with `forceRefresh` after a rejection, once per credential generation (requests that signed with an already-replaced key do not refresh again), then rethrows so the existing storage wait owns the retry. - `s3-provider.ts`: installs the middleware on both S3 clients. - `run-completion.ts`: uses the credential-aware message. ## Verification - `cd server && npx vitest run src/__tests__/storage-s3-credential-rotation.test.ts src/storage/ src/__tests__/storage-outage-wait.test.ts src/__tests__/storage-s3-transient-retry.test.ts src/__tests__/storage-s3-failure-diagnostics.test.ts src/services/heartbeat/run-completion.test.ts` (186 pass). - The new `storage-s3-credential-rotation.test.ts` fails 5 of 6 cases on master (red) and passes with this change (green). It covers a real key rotation through the default credential chain, 403 windows for each code, the message, and `AccessDenied` staying permanent. - `cd server && npx tsc --noEmit` passes. - `s3-credential-refresh.test.ts`: two parallel requests signed with the old key, rejected 50 ms and 400 ms apart, cause one forced lookup (3 before the generation check, 2 after). - Restart-chaos rerun on a build with this fix and #20455: w-20261110T050044-s503 (`--env local --workloads A1,C1 --faults K1,K2 --tasks 8 --storage s3 --storage-faults ST5,ST5R --storage-fault-seconds 30-90`) passed 8/8 tasks (R1–R6 and T) with a 39 s `ExpiredToken` window and an 85 s real key rotation (76 credential 403s). Before the fix, w-20261110T041556-s501 failed 4/6 tasks. ## Risks - Scope: calls with a Readable body (streamed `putObject`, buffered multipart) cannot be resent, so they still fail on the first rejection, as they do for outages. The middleware has already re-resolved the key, so the caller's next attempt (the run-level wait retry for run work) uses the new key. - A key that the store rejects for good (for example a wrong secret) now waits up to the storage wait budget (5 min in the call, then up to 10 run retries) before the board shows the exhausted message, instead of failing at once. - `forceRefresh` re-runs the credential chain after a rejection. Calls are coalesced, so a burst of rejections causes one refresh. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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Nicky Leach
|
8809f44b5e | Connect Codex and Claude login to agent computers (#20417) | ||
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DottaandClaude Opus 5.5
|
120017e39d |
fix(workspaces): read saved workspace files in place instead of extracting the whole archive (#20442)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - When a cloud task finishes, its workspace is saved as an encrypted
snapshot and its sandbox is released. The board's Files view then reads
that saved copy
> - Saved Files access downloaded, decrypted and extracted the whole
archive for every request, and refused archives over 512 MiB with
`too_large`
> - A finished task in a Paperclip-sized repository saves a snapshot of
about 730 MiB, so its files could not be listed or opened at all
> - The archive format already records each file's size and SHA-256, and
the snapshot records the manifest digest, so single files can be read
and verified without the rest of the archive
> - This pull request reads the saved archive in place, one verified
file at a time
> - The benefit is that users can open any file of a large finished
workspace quickly, with bounded memory and no whole-archive transfer
## Linked Issues or Issue Description
**What happened?**
In restart-chaos waves on Daytona with a real Paperclip clone, the
committed workspace snapshots were 763,944,535 bytes. After the sandbox
was released, every saved Files read returned 422 `too_large` (506 reads
in total), because `createSavedWorkspaceLoader` refuses archives over
`maxArchiveBytes` (512 MiB). The board Files view uses the same loader,
so it fails the same way.
**Expected behavior**
A user can list and open any single file of a saved workspace of
Paperclip-repository size without the server extracting or buffering the
whole archive. Memory and time stay bounded per request, and integrity
is still verified.
**Steps to reproduce**
1. Run a cloud task whose workspace is a large repository, so the final
snapshot exceeds 512 MiB.
2. Let the task finish and its sandbox be released.
3. Open the task's Files view, or call `GET
/api/issues/:id/file-resources/content?workspace=execution&path=…`: it
returns 422 `too_large`.
**Paperclip version or commit**
`master` at
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DottaandPaperclip
|
0934b834c4 |
perf(workspaces): release retained cohort parent scratch early (#20447)
## Thinking Path > - Paperclip manages agent work and preserves its workspace files. > - Online migration captures local files and publishes remote workspace authority. > - Each capture verifies encrypted readback, restores the archive and compares the current source. > - A cohort kept every completed parent payload until the whole cohort published. > - A larger cohort could retain many complete copies while later members still worked. > - This pull request releases only finished parent payloads before a capture worker starts another member. > - Nested-child proof, final fresh checks and atomic publication keep their existing owners. ## Linked Issues or Issue Description Refs: #20418, #20437, #20441. **What happened?** A cohort retained each member's capture archive, verified archive, comparison archive and restored tree until atomic publication. The capture worker limit did not limit that retained parent data. **Expected behavior** Release completed parent payloads once their consumers finish. Keep files that a later publication check still needs. **Steps to reproduce** Run the added held-peer regression against the previous owner. It completes one parent, holds a later member and finds all four completed parent paths still present. ## What Changed - Release three named parent archives and the restored tree after a successful online cohort capture, before that worker takes another member. - Keep parent scratch roots and all nested-child verification areas. Keep every final fresh child and publication check. - Retain payloads for archived repository intents. Use the existing writable-tree cleanup for read-only restored directories. - Add real filesystem regressions for early release, retained child proof, late child mutation and the final archived-intent path check. Update the source-fence guide. This branch incorporates the final #20441 owner and both distinct saved-relative-path regressions. Its scratch-specific production change is nine added lines and one removed line. Single imports and saved journal/archive formats stay unchanged. ## Verification - Canonical Node24 preflight passed. The Runner build came from the content cache. After the current-master merge, the preflight checked 1,674 inputs and 1,817 outputs and found unchanged build inputs. Plugin SDK prerequisites passed. - Genuine RED on the unchanged #20441 owner: one held-peer case failed at four retained payload paths; the archived-intent control passed. The run took21.14s, with221 unrelated cases intentionally unselected. The first sandbox-restricted setup attempt hit DNS errors and was stopped; the normal network-qualified preflight then passed. - Initial treatment: four selected PostgreSQL/filesystem cases passed in38.61s, with219 intentionally unselected. The held peer observes released parent payloads and retained child areas. A later child mutation still refuses the whole cohort and publishes no authority or activity. - The archived-intent control observes all parent payloads at the actual final saved-relative-path check. The changed path refuses publication and keeps task/repository state intact. This exercises its actual singleton owner; archived-only sources do not enter the online cohort API. - After a normal merge of current master and the final #20441 test, the five affected cases and server TypeScript passed. No full local matrix was repeated. Initial CI failed the inherited recovered-upload assertion because the new retention test leaked its archive and filesystem spies. That case passed alone but failed in the adjacent three-case sequence (two pass, one fail); scoped `finally` cleanup made the same sequence pass three of three in17.15s, with191 unrelated cases intentionally unselected. No upstream assertion or production code changed. Server TypeScript passed again. All required [CI](https://github.com/paperclipai/paperclip/actions/runs/42746586511) passed on final normal-merge head `604c0f67bf7282ecd3f6e5e5da1c9d8637ef70cc` (56 success, four skipped and one neutral; no pending or failing checks). The previously failing server4/12 passed in10m23s. Fresh Greptile is5/5 on that exact head with no open threads. The merge resolves the duplicate #20441 squash insertion; both tested owner and test files are byte-for-byte identical to repair head `b5c8eed82b6a676985e1a8af785e5df2ae3be2ce`. The prior head received [Greptile5/5](https://github.com/paperclipai/paperclip/pull/20447#issuecomment-6757435885); its archived-cohort coverage warning was [answered using the actual public admission boundary](https://github.com/paperclipai/paperclip/pull/20447#discussion_r4520641017). - `git diff --check` passed. No hosted cleanup, migration, provider action or deployment was performed. ```sh node scripts/agent-preflight.mjs --skip-rust-debug pnpm --filter @paperclipai/plugin-sdk ensure-build-deps node --import ./cli/node_modules/tsx/dist/loader.mjs packages/db/src/test-postgres-command.ts pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts server/src/services/remote-workspace-migration.test.ts -t 'releases completed parent payload|retains archived intent payload|shares the merged child verifier|rechecks the current archived repository intent path at publication' pnpm --filter @paperclipai/server exec tsc --noEmit ``` ## Risks - This reduces retained parent data. It does not establish a total disk bound. Active capture/encryption/readback files and retained child areas still need measured capacity. - Cleanup failure uses the existing worker abort and peer-join path before publication. Original source files, uploaded objects and journals remain intact. - Archived repository intents still need their restored payload at publication. Those payloads stay retained. No capture limit, budget or integrity guard changes. - Saved operations and archive identities carry forward unchanged. Resume still uses the existing full source and authenticated object checks. ## Model Used OpenAI GPT-6 (Codex), with tool use and code execution. The runtime does not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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|
DottaandPaperclip
|
9f00f2b83e |
fix(workspaces): recognize committed imports in linked source scope (#20444)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Online workspace migration fences every local Git source that a capture can reach. > - A linked worktree can remain on disk after its workspace is migrated to cloud storage. > - The source inspector lists local workspace rows, so it then treats that linked worktree as unregistered. > - This pull request uses the existing canonical import journal and snapshot proof to recognize its exact original physical root. > - The benefit is that a later linked workspace can migrate without weakening source ownership or stopping agents. ## Linked Issues or Issue Description **What happened?** After one linked Git workspace commits its canonical migration, its local files and Git registration can remain. The workspace row now uses `cloud_sandbox`. A later migration of a related local workspace fails with `online_workspace_source_scope_unproven` because the original linked root is no longer in the local-row list. **Expected behavior** The inspector can recognize the exact original physical root from the same-company successful migration journal and its committed or superseded snapshot. Unknown or changed provenance must still fail. **Steps to reproduce** 1. Create two local Git workspaces with a shared worktree registration. 2. Complete canonical migration for one workspace while retaining its original local files. 3. Inspect or migrate the other workspace. Before this fix, the inspector returns no source scope. **Paperclip version or commit** Reproduced on `f73ff4ace9` with real PostgreSQL, Git, filesystem, and canonical snapshot storage. **Deployment mode** Self-hosted server. This is a core workspace migration bug. **Relevant logs or output** `remote_workspace_migration_blocked:online_workspace_source_scope_unproven` Refs #20418, #20436, #20441. This fix changes source registration only. ## What Changed - Let the existing imported-source owner match optional exact linked physical roots in addition to its existing nested-child paths. - Require each added linked root to have a finished successful same-company journal, an exact committed or superseded snapshot binding, and the same manifest digest. - Include those proven physical roots in the online scope and its source fingerprint checks. - Retain Git root, backlink, pointer, ownership, company, foreign writer, source lock, and publication reinspection guards. - Keep existing nested-child behavior and all persisted schemas unchanged. Previous-release canonical imports remain readable. No runtime authority comes from an arbitrary provider path or remote authority. ## Verification - Genuine baseline RED: both committed and superseded imported sibling cases return a null source scope after a real successful import. - GREEN: 17 focused real-PostgreSQL/FS/Git tests pass. They cover both imported states, the original issue source fence, changed journal/snapshot/manifest/unfinished provenance, a foreign local alias, unregistered links, backlink/pointer corruption, and a listing change during upload. - Command: `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'imported linked Git source|foreign local writer|unproven linked|revalidates the linked Git listing|nested Git wrapper.*shared|nested Git wrapper blocked'`. - Server layered typecheck, module boundaries, and `git diff --check` pass. - Actual controlled staging canary: the canonical API committed both targeted workspace snapshots in 310.249 seconds. The owned job closed with exit 0 and all owned processes joined. A separate read-only inventory confirmed that both workspaces left the legacy provider set. This used a reviewed private administrative artifact; the serving app image and normal release path stayed unchanged. - Final head `1759ac6f40a1b35f79587b246de8b36e7a371537`: 56 successful checks, 4 intentional skips, and 1 neutral status. Greptile and Ponytail both report 5/5 with no findings or unresolved threads. - Initial CI had unchanged Runner-support and workspace-recovery timeouts, plus an unrelated heartbeat plugin-environment timing/fixture failure. The same owning inputs passed on the sibling PR. Each failed job then passed one targeted retry on unchanged product bytes. The original failures remain recorded in the CI history. ## Risks - This recognizes a retained original root only from the existing committed import ledger. It does not treat arbitrary cloud workspace paths as local ownership. - Each physical root still passes the existing Git identity and foreign-scope checks. Publication re-inspects the source scope under the existing source locks. - This adds no object reads, provider calls, recurring work, capture algorithm changes, or data exclusion. The existing import query keeps its current 10,240-row limit and runs during explicit migration inspection only. ## Model Used OpenAI GPT-6.1 Codex, with reasoning, repository tools, and code execution. The host does not expose an exact context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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|
DottaandPaperclip
|
0991d9bda1 |
fix(workspaces): protect migration sources and add guarded recovery service (#20443)
## Thinking Path > - Paperclip manages agents and their task workspaces. > - Online migration saves files before it publishes remote workspace authority. > - A saved migration journal can survive the importing process. > - Git cache expiration did not count that journal as a consumer. > - Expiration could remove a source and change its fingerprint while its import was incomplete. > - This PR protects unfinished imports and exposes a guarded internal service transition for an already affected cohort. > - New imports can preserve the current sources while all old recovery data stays retained. ## Linked Issues or Issue Description **What happened?** Git cache expiration could archive and remove a workspace after an import process ended but before its saved cohort finished. The saved source fingerprint then differed from the current archived workspace. Exact cohort resume correctly refused that changed source. Reopening the workspace cannot recreate the old metadata or fingerprint. **Expected behavior** An unfinished migration remains a durable consumer after process loss. If an older server already expired some sources, one canonical transition can fail the exact unpublished cohort without losing its snapshots, objects, source history, or recovery obligations. New attempts use the current verified sources. **Steps to reproduce** 1. Start a cohort import of eight Git worktrees with local changes. 2. Interrupt it after four snapshot uploads. 3. Let an older server expire two idle source worktrees. 4. Resume the saved cohort. It refuses the changed archived sources. Related: #20429 preserves exact cohort identity when independent companion imports change only the scope proof. #20424 preserves prepared recovery state for archived sources. This PR handles completed source expiration, not a scope-only change. Public searches found related expiration work and no matching compensation owner. ## What Changed - Count saved migration markers and unfinished migration journals as Git expiration consumers. Keep failed migration retention holds as consumers too. - Expose `supersedeExpiredRemoteWorkspaceMigrationCohort` as an internal service API for a privileged operator with a real database handle and reviewed company/cohort inputs. It is called directly by the PostgreSQL/Git test and reviewed one-time administrative qualification. It adds no CLI mode or HTTP route. The existing CLI still refuses a damaged cohort; this PR does not claim automatic CLI recovery. - Require an exact unpublished cohort of up to eight members. It requires completed expiration and an unexpired restore recipe for each missing member. The other members must retain their saved source fingerprints. - Recheck current source and recovery state under source, lifecycle, finalizer, and row locks. One transaction fails all old journals, writes audit records, and removes only their exact matched active markers. - Keep old cohort proofs, operations, snapshots, and object references. Genuine failure receipts use the existing failed-save retention hold. This transition does not report migration success. - Reuse the existing bounded source-lock queue when `sourceLockWaitMs` is set. Keep fast refusal by default. Cancellation targets only this waiter, and current checks still run after admission. - Record predecessor IDs on new attempts and reserve a snapshot generation above the existing ledger maximum. New success does not retire the old hold. - Document the owning transition and retention rules. ## Verification - The two new journal-consumer cases failed under the old expiration predicate and passed under the new predicate. - The full new recovery case passed in 21.12 seconds with real PostgreSQL locks, Git repositories, encrypted local object storage, and archive restores. It covers four retained uploads, two real expirations, unchanged old resume refusal, authority change refusal, transaction rollback, a held native finalizer, idempotence, eight new imports, dirty/untracked file restores, and a retention pass 30 days later with no object deletion. - Server TypeScript and module-boundary checks passed. - On `7cec8c915acfad2d08874eaf26abaa852f560219`, the queued-admission regression failed before forwarding the option (24.07 seconds), then passed (22.25 seconds). It verifies a real held project lock, cancellation that preserves the holder and all journals, release into full compensation, retention, and eight restored fresh imports. Current server TypeScript and module/diff checks passed. The only production follow-up changes are the optional queue input and its existing-owner call. - The earlier `737a0df3a71b10fe48d7bbfe7ffd8ae296b4852c` CI run had one Runner support failure: the unchanged credential-free Python/Pi calibration exceeded its outer 25-second subprocess deadline. That job passed 6,926 other tests and skipped four. The timeout is retained as a nonpass. The changed logical head requires fresh CI and review; no test deadline was raised. - The affected cohort, Git expiration, and eligibility suites passed all 148 cases in 228.41 seconds on `aa589f3f447e36d0277c32f8b44cbe5e84a673be`. Merged current master `a9d0946e64`; the only conflict retained both independent added test blocks. The complete merged cohort suite passed all 30 cases in 70.00 seconds on `737a0df3a71b10fe48d7bbfe7ffd8ae296b4852c`, including upstream larger-cohort controls. Final-head server TypeScript, incremental preflight, module-boundary, and diff checks passed. Unchanged expiration/eligibility evidence remains valid. Fresh `809ab704e619812d8f1bf38cf5de9c65893861cc` CI and review are pending. - On `809ab704e619812d8f1bf38cf5de9c65893861cc`, the complete recovery fixture passed in 21.38 seconds after adding one valid archived recipe with no restore point. It refuses with `migration_supersession_expiration_unverified` and keeps all workspaces, journals, and snapshots unchanged. The same case then verifies queue cancellation/release, full compensation, retained history, fresh imports, and restored bytes. Server TypeScript passed. This follow-up changes only the test and service-scope documentation; product bytes remain identical to qualified `7cec8c915acfad2d08874eaf26abaa852f560219`. - Earlier fixture attempts did not pass. They exposed the selection of a held source and an incorrect expected refusal string. The fixture now selects eligible sources and asserts the canonical authority refusal. Production guards were not relaxed. - Live qualification of the exact owning product bytes completed in 230.419 seconds. All eight old operations became failed with auditable supersession lineage. All eight old snapshot rows remained byte-for-byte identical, and their object references remain retained. The existing source-lock queue waited 1.151 seconds for a normal finalizer handoff. The three complete source/recovery passes took about 218 seconds including their transaction, which explains why the earlier 180-second total budget was insufficient for that measured workload. No source proof or publication guard was skipped. Compensation made no provider or object-storage calls. - Earlier live qualifications remain nonpasses: the 180-second attempt did not finish; its instrumented successor completed source checks and refused a busy source lock before mutation. The successful bounded-queue attempt retained those failure records. Fresh archived/online imports are a separate subsequent step and are not claimed complete here. - The local checks do not claim browser acceptance, app deployment, fleet enrollment, or a completed zero-downtime cutover. ## Risks - This owner mutates migration bookkeeping. It preserves all-or-nothing row comparisons and current source/recovery locks. A changed journal, authority, writer, finalizer, expired recipe, or partial transaction refuses the transition. - Historical snapshots and objects remain pinned after new success. This intentionally retains storage. Release requires a separate reviewed action. - An older importer cannot use the successor generation contract. Use the containing canonical owner for recovery. Normal app delivery must also carry the expiration guard; a private maintenance graph does not patch a running server's cleanup worker. - The migration owner crosses 1,000 lines. The bounded compensation transition remains beside its private source inspection, fingerprint, fence, reservation, and publication contracts. Moving it now would require exporting or duplicating those safety owners. No unrelated refactor or new framework is included. ## Model Used OpenAI GPT-6 through Codex, with reasoning, source editing, Git, and local execution tools. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
29a66d679e |
fix(workspaces): verify archived repository intents before publication (#20441)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Workspace migration moves local files into durable, authenticated snapshots. > - Archived Git workspaces can retain an unmaterialized repository request after their local tree is removed. > - Admission cannot prove filesystem absence from the removed tree. > - This pull request checks strict request candidates against the private restored Git tree and the authenticated snapshot readback. > - Publication rechecks current repository rows without changing the request or task history. ## Linked Issues or Issue Description **What happened?** An archived workspace with an authenticated restoration recipe and an unresolved, unmaterialized repository request fails migration with `repository_preparation_unresolved`. Its original directory no longer exists. **Expected behavior** Migration can preserve the request when the actual private restored tree proves its target absent and every parent safe. It must refuse partial materialization, symlinks, or changed request state. **Steps to reproduce** 1. Archive a Git workspace with a valid saved recipe and a pending repository request. 2. Remove its original local workspace directory. 3. Run canonical workspace migration. The previous implementation refuses before it can inspect the restored tree. **Paperclip version or commit** Reproduced on `1ca3e8ea2a759e511ab2d2659339c6c770a7a2ba`. **Deployment mode** Self-hosted server. This is a core workspace migration bug. **Relevant logs or output** `remote_workspace_migration_blocked:repository_preparation_unresolved` Refs #20416, #20424, #20436. These fixes retain their source, recovery, and ownership guards. ## What Changed - Separate strict repository request metadata from filesystem absence proof. - Admit only strict candidates backed by a canonical archived Git recipe to private materialization. - Verify target absence and safe parents before a new upload and after authenticated archive restore. - Lock and recheck current repository rows before authority publication, including recovered uploaded archives. - Preserve previous-release recipes, request rows, task selection, history, provider references, and unresolved recovery obligations. No persisted schema or public option changes. ## Verification - Genuine baseline RED: both pending and needs-repair archived requests fail on unchanged master. - GREEN: 27 focused real-PostgreSQL/FS/Git tests pass. Includes partial/symlink refusal before upload, request mutation during upload, recovered-upload readback, and existing native F/source checks. - Command: `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'archived repository intent|unmaterialized repository request|unresolved repository request|pending repository|unselected archived recipe|archived prepared source|competing native F owner'`. - After rebasing onto current master, all six new cases pass on `0b6854789acc067a44e697acebdc04e51b9afe88`. Server layered typecheck, module boundaries, and `git diff --check` pass. A review follow-up adds one pending-path mutation regression (1/1 real-PG pass) without changing product code. Fresh required CI runs on final head `2a30a4b444108488ac8b51d0c46c340ee15227b9`; fresh Greptile is 5/5. Server7 had an unchanged trace-parent assertion failure; that same shard passed on the previous product-identical head and the linked-source sibling PR. The original failure remains recorded. The single targeted server7 retry passed. Final head has 56 successful checks, 4 intentional skips, and 1 neutral review status. ## Risks - Metadata admission is only a candidate check. A candidate still fails unless the private authenticated filesystem proves absence. - Publication keeps repository rows locked while it checks their current paths against the owned restored tree. A real pending-relativePath mutation now tests this final check. Existing workspace/source/native locks remain in place. - Absence is proved only in SAVED data reconstructed from the retained recipe and snapshot. This does not prove that a request never materialized before archival. Existing Git restore points can exclude ignored `.paperclip-repositories` paths outside recorded checkouts. This PR does not change that preexisting coverage or recover bytes that were never saved. - The original recipe, restore point and checkout references remain unchanged. No files are recovered into or removed from the original directory. No request is marked ready or restored. Partial target files present in reconstructed saved data remain blocked and retain their state. ## Model Used OpenAI GPT-6.1 Codex, with reasoning, repository tools, and code execution. The host does not expose an exact context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
5bad074baa |
feat: add individual agent interaction permissions (#20411)
Add eleven sparse incoming and outgoing restrictions, human CLI/API administration, shared mutation enforcement, and pending-delivery checks. Preserve existing defaults, agent settings, and existing authorization boundaries. Co-Authored-By: Paperclip <noreply@paperclip.ing> |
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Dotta
|
f73ff4ace9 |
fix(native): reprove stale filesystem preservation receipts (#20438)
## Thinking Path > - Paperclip manages agent work and preserves saved native sessions across releases. > - Filesystem independence receipts bind database facts to preserved controller and skill evidence. > - A workspace migration can add run metadata without changing those preserved bytes. > - That change makes the saved facts digest stale. Full native preservation then refuses the existing receipt, even after fresh source checks. > - WEB preservation already supports a full current proof and guarded receipt refresh. > - This pull request applies that pattern to full native receipts, reuses the authenticated archive, and keeps the existing ownership and destruction checks. > - The benefit is a current receipt without a new archive or provider replay. ## Linked Issues or Issue Description Refs: #20322. **What happened?** Adding the canonical `legacyWorkspaceRecoveryMigration` marker to a settled native run makes its saved receipt stale. The full native preservation owner checks current evidence but then refuses the old facts digest. **Expected behavior** The owner can refresh the proof metadata after it proves all current facts and preserved bindings again. Changed evidence or authority must leave the prior receipt intact. **Steps to reproduce** Use the added PostgreSQL regression. It saves a valid receipt for a succeeded source with 453 checkpoint parts, adds the producer-shaped migration marker, and calls preservation again. The unchanged owner fails with `native_harness_filesystem_independence_unverified`. ## What Changed - Reuse the prior controller archive through the existing authenticated readback path. - Require the old receipt to match every current immutable binding before a facts refresh. Reconstruct its exact digest from unchanged bindings and the prior proof fields. - Recheck current database facts, assets, controller and local files under the existing finalizer, selection, task and run fences. - Publish with an exact prior-receipt comparison. Keep a valid concurrent winner and refuse changed receipts or new owners. - Audit the prior receipt digest and four proof fields. Add focused source, integrity, race and DB-only validation tests, and update the database guide. ## Verification - Local Node24 canonical preflight and plugin SDK prerequisites passed. The Runner build came from the content cache. After a normal merge of fresh master, preflight confirmed unchanged build inputs. - Genuine RED on `3040448da5`: the saved receipt is valid before the migration marker and stale afterward. Reproof fails at the old receipt guard (one failed, 102 intentionally not selected). Both retained RED attempts reached that same guard. - GREEN on final local merge `00f4b5d678083106afc88fb2f7e0588961b46d6d`: 19 PostgreSQL controls passed, 91 intentionally not selected (17.75s). The wrapper completed cleanup. - The positive preserves the same archive, controller bytes, assets, local proof and all 453 checkpoint parts. It performs authenticated object reads and zero archive PUTs. Runs, results, finalizers and leases remain unchanged except for the receipt. The audit reconstructs the exact prior receipt. - DB-only validation passes with the original home, state directory and volume absent, while storage reads throw. - Refusal and race controls cover changed asset bindings, raw controller bytes, missing destruction evidence, unknown receipt fields, a valid concurrent winner, changed receipts and a late active owner. Existing WEB refresh, physical finalization-lock and saved-binding controls also pass. - Server TypeScript passed, including the adjacent integration test. Fresh Greptile is 5/5 on exact head `00f4b5d678083106afc88fb2f7e0588961b46d6d`, with no review threads ([review](https://github.com/paperclipai/paperclip/pull/20438#issuecomment-6756548830)). Final-head CI is terminal: 56 success, 4 skipped and 1 neutral. The aggregate `ci / verify` passed ([run](https://github.com/paperclipai/paperclip/actions/runs/42737704110)). - The first Runner-support job had one unrelated process-inspection nonpass: `server-stop.test.ts` expected a successful wrapper close, but its bounded process inspector returned no table. Its cause remains unknown. The unchanged test, process helpers, workflow and dependency inputs match the passed master control. One authorized same-head job retry passed all 328 files / 6,927 tests (4 skipped); the exact previously failed case passed in 665ms ([retry](https://github.com/paperclipai/paperclip/actions/runs/42737704110/job/129576420893)). No timeout, assertion or source change was made for the retry. ```sh node scripts/agent-preflight.mjs --skip-rust-debug pnpm --filter @paperclipai/plugin-sdk ensure-build-deps node --import ./cli/node_modules/tsx/dist/loader.mjs packages/db/src/test-postgres-command.ts pnpm exec vitest run server/src/services/native-runtime/native-harness-filesystem-independence.integration.test.ts -t "reproves stale native facts|retains stale native proof|guards stale native reproof|invalidates a published receipt after changed|actual physical-finalization lock|refreshes stale WEB facts|refuses a WEB facts refresh|retains or refuses the existing receipt when an earlier capture finishes late" pnpm --filter @paperclipai/server exec tsc --noEmit ``` ## Risks - Old receipt schemas and immutable bindings remain required. Full fresh proof carries compatible saved receipts forward; unknown fields or changed evidence refuse refresh and preserve the old receipt. - Full native preservation still requires canonical destroyed-provider receipts. The change retains the existing source capability, cancellation, finalizer and publication checks. - Only proof metadata changes. No provider operation, archive replacement, hosted recovery or deployment was performed for this PR. Live qualification remains with the operator after delivery. ## Model Used OpenAI GPT-6 (Codex), with tool use and code execution. The runtime does not expose a more specific model ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge |
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DottaandPaperclip
|
07f6e8ff75 |
perf(workspaces): group same-root cohorts with bounded workers (#20437)
## Thinking Path > - Paperclip preserves agent work when its control-plane server is replaced. > - Online migration imports local workspaces into authenticated snapshots. > - Several workspace records can point to one physical directory. > - Shared child verification avoids repeated work inside one held cohort fence. > - The eight-member limit splits 30 identical-root aliases into four cohorts and repeats the child passes. > - This pull request admits up to 32 members only for one canonical physical root, while keeping each work stage bounded to eight peers. > - The benefit is fewer repeated child checks while capture and publication guards stay in place. ## Linked Issues or Issue Description Refs: #19873, #19882, #20418, #20424, #20429. Related PR search found shared verification and restart fixes, but no larger same-root cohort owner. The shared verifier and archived-source changes are merged into this branch from current master. **Current behavior** Thirty fresh aliases of one physical root require cohorts of 8, 8, 8 and 6. Each cohort performs an initial and final local child-validation pass. The same children are checked eight times in total. **Proposed behavior** Admit one cohort with nine to 32 members only when every canonical resolved physical root is exactly equal. Keep the existing complete source-scope equality and admission guards. Keep mixed-leaf cohorts limited to eight members. Bound source reads, reservations, recovery checks, final readers, replay and cleanup to eight joined peers. Capture concurrency stays at most eight. **Reason and benefit** For N distinct canonical covered children, the 30-alias case changes 8N local child checks to 2N, a 75% reduction in repeated child validation. If N is 68, that is 544 checks versus 136. Thirty parent captures, uploads and restores remain required. No total wall-clock improvement is claimed. **Breaking changes** Saved cohort fields and exact membership remain unchanged. Older tools that enforce the eight-member bound refuse larger cohorts. Use the newer tool to resume them; never split or regroup their saved membership. ## What Changed - Raise the canonical service, saved-cohort and maintenance-request member bounds to 32. Keep the capture-worker bound at eight and single-workspace modes at one. - Require one exact canonical physical root for more than eight members. Keep the existing full source-scope comparison, leaf rule and P/I/L/F guards. - Use one private stage mapper with batches of at most eight. Join every started peer before an error can leave the stage. Stop future batches after a failure or cancellation. - Preserve the existing cancellation and pending-snapshot ordering for stages of at most eight members. Check cancellation around extended batches. - Keep all saved cohort, member, operation and snapshot identities, proof refresh and atomic publication checks. - Bound cleanup without skipping later scratch cleanup after an earlier cleanup error. - Extend the existing PostgreSQL fixture with ten real aliases, partial-upload resume, cold restoration, replay and mixed-root refusal. Extend the request boundary test. - Document old-tool refusal, work counts and the retained-scratch capacity bound. ## Verification - Canonical Node24 worktree preflight and Plugin SDK prerequisites passed. After merging current master, preflight passed again with unchanged cached build inputs. - Genuine RED on the old bound: both real ten-alias import/resume cases and the 32-member request reject the eight-member limit (3 failed; 47 not selected; 18.23 seconds). - First focused GREEN: 4 passed in 24.20 seconds. The fresh ten-alias case performs exactly four local child captures for two children: one initial and one final pass. Actual reader, transaction and upload maxima are eight. All ten archives cold-restore after the original source is parked; replay retains the same cohort. - The partial-upload case keeps all ten saved operation IDs and the existing snapshot IDs. More than eight members across different canonical leaf roots refuse before any journal or storage work. The request parser accepts 32 members and eight workers, and refuses 33 members or nine workers. - The first expanded corpus had 55 passes and one real compatibility failure: a new eager cancellation check skipped the old pending snapshot boundary. The mapper now retains existing cancellation ordering for at most eight peers. That failure remains recorded as a nonpass. - Final sources include current master at `18697b8d21`, with the verifier, archived-source and UI repairs. The selected four-file corpus passes 47 cases in 78.88 seconds, with 191 intentionally not selected. The full maintenance suite separately passes 23 cases in 10.21 seconds. Nine cases overlap; the final union is 61 distinct passing checks. - Final coverage includes all 27 cohort cases, all 23 maintenance cases, all six actual old-format compatibility cases and five archived prepared-source controls. Existing source mutation, finalizer contention, actual fence loss, cancellation peer joins, journal compare-and-swap and outer-commit rollback controls pass. - Final server TypeScript, module boundaries and whitespace checks pass. Only the resource-risk documentation changed after that test run; runtime and fixture bytes stayed unchanged. - Commands: `pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts server/src/maintenance/online-workspace-migration.test.ts server/src/__tests__/online-workspace-migration-compatibility.test.ts`; archived controls use the existing `remote-workspace-migration.test.ts` cases named `unselected archived recipe` and `archived prepared source`; `pnpm --filter @paperclipai/server exec tsc --noEmit`; `node scripts/check-module-boundaries.mjs`. - Initial source review was 4/5 and requested a control for the extended reader-batch stop boundary. The test-only follow-up `ca80ae9cc8791a72dab632090488093c5d0916f3` adds actual ten-member failure and cancellation cases. They hold a first-batch peer, verify that the source fence stays held, and prove members nine and ten never start preflight. Both pass in 10.87 seconds with no new journal, snapshot or upload effects. Runtime source hashes are unchanged; the local union is now 63 distinct checks. - The first stop-test attempt observed the two controlled readers before all SQL-backed peers had entered the inspection callback. Its assertion was too early. The corrected test checks the held first-batch readers at that point, then requires all eight to join before completion. Both cases pass; the earlier attempt remains a nonpass. - Final head `ca80ae9cc8791a72dab632090488093c5d0916f3`: [required CI](https://github.com/paperclipai/paperclip/actions/runs/42737676664) and [aggregate verify](https://github.com/paperclipai/paperclip/actions/runs/42737676664/job/129575813765) passed. Full rollup: 56 successes, four intentional skips and one advisory neutral result. Classic Snyk passed. [Greptile](https://github.com/paperclipai/paperclip/pull/20437#issuecomment-6756419093) and [Ponytail](https://github.com/paperclipai/paperclip/pull/20437#issuecomment-6756388693) both reviewed that exact head at 5/5. The one review finding is addressed and resolved; no open findings remain. Older partial CI and the initial 4/5 review remain nonfinal evidence. Hosted acceptance and measured wall-clock savings remain pending. ## Risks - Completed parent captures retain their scratch until the atomic publication completes. A 32-member cohort can retain up to four times the parent scratch of an eight-member cohort. Check actual parent capture, verification and restore sizes against current target filesystem capacity before selecting a larger cohort. Keep the existing resource guards. - Larger member arrays must not raise execution fanout. Every reader/reservation/final stage is bounded to eight and joins current peers before failure. Capture workers remain at most eight; child-verification workers remain two. - More than eight members require the exact same canonical physical root and complete source scope. A different root, new writer, changed source, recovery owner or journal still refuses through the existing owners. - Shared verification is limited to the held invocation fence. The separate fresh final pass remains required after all captures join. Different child sets and restart attempts do not share a local-byte proof. - The old saved membership and archive identities remain authoritative. Older tools fail closed on the larger bound. No schema, archive or provider format changes are included. ## Model Used OpenAI Codex, GPT-6 family, with repository tools and code execution. The runtime does not expose a more specific deployment identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandClaude Opus 5.5
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1ca3e8ea2a |
fix(native): let a resume claimed after a restart write the run's existing log (#20427)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - When a native run is interrupted, Paperclip can persist a same-run resume: a later attempt continues the same run from its exact checkpoint > - If the server restarts before that resume is dispatched, the new server process claims it. The resume then reopens the run's existing log, and only the current controller may write it > - The resume claim took the lease owner but left the dead process's controller identity on the lease. The log writer check compares the boot id, so it refused, and the exact checkpoint resume failed as `run_log_writer_authority_lost` > - This pull request stamps the claiming process's identity on the resume claim, as restart recovery's own claim already does > - The benefit is that a resume persisted before a restart continues after it, instead of failing and needing a manual Retry ## Linked Issues or Issue Description Refs #19831. Storage chaos wave `w-20261110T003423-s9903` (local ST2, seed 9903), task t01 (codex C1, K1). The wave went 7/8; t01 was the one task that needed a Retry. - Run 279772b3 was SIGKILLed during its first turn. The restarted server resumed it, and the Codex snapshot failed ("cannot safely recover an ambiguous Codex turn start"). A same-run resume was persisted. - A second SIGKILL hit (00:35:37), and the next process dispatched the scheduled resume at 00:35:56. - The resume's run-log claim failed in `createRunLogWriterAuthority`: the coordinator lease still carried the killed process's `controllerBootId`. The exact checkpoint resume was refused (`run_log_writer_authority_lost`), and the run ended `adapter_failed`, needing a Retry. The wave had S3 latency injected, but the failure does not depend on it. The new test reproduces it on master with no storage faults. ## What Changed - `server/src/services/native-runtime/native-finalization-reconciler.ts`: `dispatchNativeSessionResumptions` writes the claiming process's controller identity (boot id, pid, host hash, process start) along with its lease owner and expiry. This matches the restart-recovery claim, so ownership proofs and the run-log writer check see the process that actually owns the resume. - `server/src/__tests__/native-session-resumption.test.ts`: a regression test for this case. ## Verification - `native-session-resumption.test.ts`: - A coordinator persisted for resume by a previous process (stale boot id), on a run with an existing object-store log, is dispatched. - The run-log writer check accepts the new claim, and the lease carries this process's identity. - The test fails on master with `run_log_writer_authority_lost`. - Regression: the native resumption, binding, recovery-deadline, restart-recovery, scheduled-resume, owner-release, runner-ownership and recovery suites pass locally. `tsc --noEmit` passes for `server`. ## Risks - The resume claim now also refreshes the controller pid, host hash and process start on the coordinator row. These describe the process that owns the lease, exactly as after a restart-recovery claim. A claim by the same process writes the same values as before. - No schema migration. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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Nicky LeachandClaude Opus 5.5
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232480d18f |
perf(runner): write preparation span rows to the run log in the background (#20426)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before a native run starts its provider, the executor copies the preparation spans (queue, prepare phases, environment) into the run trace and the run log > - It records about 25 spans and waits for one run-log insert per span, one after another > - On a hosted test deployment, that step (`native.controller.span_persistence`, added in #20396) took a median of 0.28 s, and every task waited for it before the Runner started > - The run trace already has a way to write diagnostics without blocking the caller: `defer`, which `finish` drains before the root span closes > - This pull request writes those run-log rows through that path, in order, while the spans themselves are still recorded at once > - The benefit is about 0.25 s less before the provider starts, on every native run, cold or warm ## Linked Issues or Issue Description **What existing behavior does this improve?** The time between the end of heartbeat preparation and `native.session.execute` for native Runner tasks. **Subsystem affected** Server: native runtime tracing (`server/src/services/native-runtime/native-run-trace.ts`) and the native session executor. **Current behavior** `executeNativeSession` calls `trace.record` for each preparation span and awaits it. `trace.end` awaits `emitCompletedSpanEvent`, which inserts one `run.performance.span` row through `onEvent`. On a hosted test deployment, measured with the #20396 spans across 10 runs, `native.controller.span_persistence` took a median of 0.28 s: - 0.30 to 0.36 s for runs right after a computer wake - 0.17 to 0.25 s for runs on an awake computer It is the second largest step between preparation and the provider start (the median of that whole gap is 1.0 s). **Proposed behavior** The spans are still started and ended at once, with the same parents. The speed-budget bookkeeping still runs at once too. Only the run-log row is written later: one row at a time, in the order the spans ended, before the trace finishes. **Reason and benefit** The rows are diagnostics, and they already carry their own start time (`wallStartedAtMs`, `startOffsetMs`). Readers do not depend on the row order: the only reader in the repository, `summarizeStartupReuse`, looks for `runner.process.launch`, which this change does not defer. The provider can start without waiting for these inserts. **Breaking changes** None. ## What Changed - `native-run-trace.ts`: `end` and `record` take an optional `deferRunLog`. With it, `end` queues the run-log row on a per-trace chain registered with `defer`, so rows are written one at a time in order and `finish` waits for them. A row requested after the trace finished is dropped, as for other deferred diagnostics. - `native-session-executor.ts`: the preparation spans and the `environment.startup` scope use `deferRunLog: true`. - `doc/run-log-events.md`: note that native preparation span rows are written late, in order. - `native-run-trace.test.ts`: two tests. - Spans are recorded under their parent while every row write is blocked, and the rows are written in order before `task.provider_session.measured`. - A deferred row requested after `finish` is not written. ## Verification - `npx vitest run src/services/native-runtime/native-run-trace.test.ts src/services/native-runtime/native-run-trace-context.test.ts` (34 passed). Both new tests fail without the source change: the first times out waiting on the blocked write, and the second sees the row written. - `npx vitest run src/__tests__/heartbeat-preparation-gap-spans.test.ts src/services/native-runtime/native-session-executor.test.ts` (1321 passed) - `pnpm --filter @paperclipai/server typecheck` ## Risks - Low risk. The change is diagnostic only: OpenTelemetry spans and the speed-budget checks are unchanged. - The preparation rows can now land in the run log after the first Runner events. Readers already use the payload times, not the row order. - If the server process dies between the provider start and `finish`, the preparation rows of that run can be missing from the run log. The OpenTelemetry spans are not affected. - The deferred rows are written while the run continues, as budget-breach rows already are, so the sink sees concurrent writes from one run. This was already the case for deferred diagnostics. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, test runs, Honeycomb queries) and extended thinking. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
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4608744977 |
fix(workspaces): preserve recovery for verified archived Git sources (#20436)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Durable workspace migration must retain saved Git files and pending native recovery. > - The archived-Git owner validates saved recipes, exact cleanup receipts, and surviving owned branches. > - Online recovery preservation currently accepts only the recipe variant. > - A valid cleanup receipt or owned branch therefore cannot migrate while an old native reference is still prepared. > - This pull request admits every verified archived-Git variant through the same recovery and finalization locks. > - Tasks stay done and keep their selected workspace, history, and pending provider obligations. ## Linked Issues or Issue Description Refs #20424, #20298, and #20418. The related cleanup work in #19812 does not cover this admission gap. **What happened?** Canonical inspection accepts the exact old commit of an archived Git workspace through a valid branch-deletion receipt or an owned surviving branch. Migration still reports `remote_copyback_unresolved` when a terminal native run retains a prepared reference. A read-only staging inventory reproduced this sole blocker for four such workspaces. Their original Git objects and canonical source proofs already exist. **Expected behavior** Preserve the verified Git baseline and every typed native/provider recovery obligation through the existing migration owner. Keep the task status, selection, history, archive state, and recovery records unchanged. Do not reopen the task or substitute the current default branch. **Steps to reproduce** 1. Save a clean archived Git workspace with an authentic cleanup receipt or a surviving owned branch, without a restore recipe. 2. Retain a terminal prepared native reference and its exact provider allocation and recovery action. 3. Remove the old task worktree. 4. Call `migrateRemoteWorkspace` online. **Paperclip version or commit** Reproduced on merged #20424, `915edcff49bb2cbacfbaee604b41e082e0397109`. **Deployment mode** Self-hosted server with PostgreSQL and configured object storage. ## What Changed - Change three conditions to accept a non-null canonical archived-Git source instead of requiring its recipe field. - Use the same typed recovery inspector, sorted native finalization locks, fresh reinspection, and source-task publication locks for all accepted variants. - Reuse the existing Git source validator, private scratch materializer, encrypted snapshot restore, journal, and recovery markers. No source-proof schema or provider protocol changes. - Extend the existing real fixture for cleanup receipts and retained branches. Verify exact old Git commits and unchanged task/recovery state. Refuse receipt revocation and branch movement during upload. ## Verification - Genuine RED on merged #20424: both new source-kind cases fail with `remote_workspace_migration_blocked:remote_copyback_unresolved,workspace_recovery_unresolved`. - GREEN: nine focused PostgreSQL/Git/encrypted-storage cases pass. They include both new variants, two actual upload-time source mutations, the existing recipe interrupted-journal resume, reference/provider mutations, and a competing native finalization owner. - Command: `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'no-recipe archived|unselected archived recipe|archived prepared source|competing native F owner'`. - All nine focused cases, server typecheck layers, module boundaries, and whitespace checks pass on exact published head `03065f97b31846a405a8911c30640ef62374e4a4`, after the clean rebase onto merged #20418. Required CI is now clean on this exact head:56 SUCCESS and4 expected SKIPPED checks, with no pending or failed checks. Fresh Greptile is5/5 with no actionable findings or unresolved threads. - Previous-release state: existing cleanup receipts, owned branches, prepared v3 references, and journal shapes carry forward unchanged. Saved snapshots and source identities retain their existing owners. Unrecognized or changed sources still refuse by the existing named errors. Migration does not declare remote files recovered or provider allocations stopped. - Hosted work in this PR was read-only source inspection and inventory. No staging import, source mutation, lifecycle reopen, or provider call was performed by this PR author. ## Risks The existing archived-Git validator now admits its other verified variants to recovery preservation. Incorrect source proof could publish incomplete authority. This PR keeps its exact commit/receipt/branch checks and full authenticated capture/readback. It also keeps all native ownership, reference, allocation, and publication checks. Missing or changed sources remain blocked, and pending remote data retains its original recovery obligation. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository tools, and code execution. The runtime does not expose a deployment suffix or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
18697b8d21 |
perf(workspaces): share cohort child-source verification (#20418)
## Thinking Path > - Paperclip must preserve agent workspace bytes during online migration. > - A cohort can contain several aliases of the same physical source. > - The importer verifies imported children before capture and again before publication. > - The immutable-object cache avoids repeated downloads but still recaptures local child bytes for every alias. > - This pull request shares the initial proof within the held cohort fence and checks fresh bytes once more after every capture joins. > - The benefit is less repeated local archive work while child mutations still block the whole cohort. > - Required browser CI twice reproduced an independent stale composer-mode bug. A focused regression proves that refreshed persisted task mode was ignored after mount. The state repair follows task data when there is no local override. Explicit local mode choices retain their own generation so a completed send cannot clear the next draft’s choice. ## Linked Issues or Issue Description Refs: #20311, #20387, #20401, #20404. **Current behavior** Two aliases recapture the same imported child's local bytes four times, even with one immutable object read. A larger alias cohort repeats this multi-GB work for each member. **Proposed behavior** Share the successful initial verification for the same physical root, Git roots and exact recorded child set or discovery mode. After all captures join, run a separate fresh final verification for each root and recorded child set. Keep every member's database and publication checks. **Reason and benefit** The local PostgreSQL fixture proves that two aliases now perform two child recaptures instead of four. Hosted timing improvement has not been measured. ## What Changed - Add invocation-local initial and final proof maps to the existing cohort child verifier. - Retain the existing canonical source-owner check before and after shared results. - Defer cohort final nested checks until all captures finish, and join every final reader before publication or fence release. - Keep singleton verification, saved journal schemas, snapshot IDs, archive bytes and per-member publication checks unchanged. - Extend the existing real PostgreSQL alias fixture with a child mutation during the last parent upload. - Repair the required CI planning-mode race with a nullable local override: absent override follows task data; a user selection belongs to the draft. A successful send or confirmed resend/receipt clears it only if no newer choice exists. Failed saves preserve the mode and restored message. Queued-edit backup retains whether the mode was explicit. Leave the browser assertion and timeouts unchanged. ## Verification - Canonical Node24 worktree preflight and plugin SDK prerequisites passed. Server TypeScript passed. - Genuine unchanged-source PostgreSQL RED: two aliases performed four local child recaptures instead of two (one failed, 22 intentionally not selected). GREEN: five source-sharing, last-upload child mutation, capture/cancellation join and actual outer-commit rollback controls passed (18 intentionally not selected; 66.53s). The actual fence-loss control also passed (one passed, 22 intentionally not selected; 38.13s). Both wrappers completed cleanup. - Migration source and tree bytes remain identical to locally qualified `466837cfe997924c3794fd5d0e96134cab1cd04c`; later commits only repair the composer and its tests. - Required planning browser CI originally failed, then failed its one unchanged-head retry, because the planning chip remained absent after opening-question dismissal. Those failures remain recorded ([original](https://github.com/paperclipai/paperclip/actions/runs/42723622165/job/129523785985), [retry](https://github.com/paperclipai/paperclip/actions/runs/42723622165/job/129534415590)). The final-head identical case passes in 30.5s, with all 34 shard cases passing ([final CI](https://github.com/paperclipai/paperclip/actions/runs/42731309796/job/129550549775)). Assertions and timeouts were not relaxed. - Composer regressions reproduced stale loaded mode, optimistic-save rollback, overwritten next-draft choices, and stale mode after confirmed resend/receipt. All 145 composer tests now pass (2.88s). Canonical UI TypeScript and token gates pass. The original planning browser case also passed locally (15.5s; 26.9s including setup). - The first final-head serialized-suite attempt was automatically cancelled at its unchanged 20-minute job limit. Grouped Turbo output did not expose an individual failing assertion; cause remains unknown ([retained attempt](https://github.com/paperclipai/paperclip/actions/runs/42731309796/job/129550550373)). One same-head diagnostic retry was a cache miss and executed all 419 heartbeat recovery tests successfully in 376.94s on the identical CI checkout ([retry](https://github.com/paperclipai/paperclip/actions/runs/42731309796/job/129561196792)). It is not classified as infrastructure or a known flake. - Final exact head `ba1f85f18085dd0e84c594ed0cb68d5bf817c93c`: all 61 checks terminal (56 success, four skipped, one neutral); required CI is green ([workflow](https://github.com/paperclipai/paperclip/actions/runs/42731309796)). Fresh Greptile is 5/5 with every review thread resolved ([review](https://github.com/paperclipai/paperclip/pull/20418#issuecomment-6754705323)). Focused commands: ```sh node --import ./cli/node_modules/tsx/dist/loader.mjs packages/db/src/test-postgres-command.ts pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts -t "shares the merged child verifier|joins active capture peers|keeps every authority and activity unpublished" pnpm exec vitest run ui/src/components/task-chat/TaskChatComposer.test.tsx pnpm --filter @paperclipai/server exec tsc --noEmit pnpm --filter @paperclipai/ui typecheck pnpm check:token-gates ``` ## Risks - Reuse is limited to one invocation under the same complete source and finalizer fences. Different physical roots, Git roots, recorded child sets and discovery mode have different keys. No local-byte proof is stored durably or reused after restart. - Initial and final maps are separate. A child change during any parent upload must fail the fresh final verification before the atomic publication transaction starts. - Final readers all finish before an error can release the source fence. Per-member database child rows, source fingerprints, journals, keys and publication locks retain their existing checks. - This reduces repeated verification for aliases. It does not change capture concurrency, upload policy or immutable checkpoint validation. Hosted speedup remains unverified. - The CI repair must distinguish task data from explicit draft intent. Only a successful send with the same choice generation clears its override; a later draft selection and failed-save rollback retain it. Regression tests cover these transitions. It adds no styling, request, or persistence changes. ## Model Used OpenAI GPT-6 (Codex), with tool use and code execution. The runtime does not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
915edcff49 |
fix(workspaces): preserve archived native recovery during migration (#20424)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Durable workspace migration must retain saved files and pending recovery work. > - An archived Git workspace can have an authenticated restore recipe and a terminal native run with pending remote files. > - Its task can select a different workspace. Reopening the archived workspace would change that task. > - The current migration owner refuses this source because it has no live local directory. > - This pull request uses the existing online recovery preservation owner for this exact archived recipe case. > - Migration retains the old task, provider allocation, recovery action, and native sync reference. ## Linked Issues or Issue Description Refs #20298, #20394, and #20418. Related cleanup work in #19812 does not cover this migration case. **What happened?** A historical archived Git workspace with a saved restore recipe and a terminal prepared native sync reference cannot migrate online. Admission reports `remote_copyback_unresolved` and `workspace_recovery_unresolved`. The old task can already select another workspace, so reopening it is not a safe migration path. **Expected behavior** Authenticate the archived files into private scratch. Preserve all typed native and provider recovery obligations in the existing migration journal and markers. Keep the original task selection, history, archive state, and restore flags unchanged. **Steps to reproduce** 1. Archive a Git worktree with staged, unstaged, and untracked files in a saved recipe. 2. Retain a terminal failed native run, its prepared sync reference, and its matching remote allocation and recovery action. 3. Remove the old local worktree and select a different workspace on the task. 4. Call `migrateRemoteWorkspace` without `writersStopped`. **Paperclip version or commit** Reproduced on `b2a7d322ed0bafda04a0b78ce14e4f25c8d5d170`. **Deployment mode** Self-hosted server with PostgreSQL and configured object storage. ## What Changed - Permit the existing online recovery owner to inspect recipe-backed archived Git sources. - Acquire the existing native finalization locks for those sources. Reinspect their exact proofs after lock acquisition and before publication. - Lock related source-task ancestry before publication. - Reuse the existing private Git restore, authenticated archive, journal, marker, and recovery-source contracts. Add no schema or provider calls. - Leave active sources and archived sources without a valid recipe on their existing refusal paths. - Include the shared UI correction from #20418. A nullable draft override follows fresh task data when the user has no local choice. Explicit choices increment a generation. Normal and recovered successful sends clear only their own choice; failed sends and newer choices remain intact. ## Verification - Unchanged master RED: the new historical-source fixture fails with `remote_workspace_migration_blocked:remote_copyback_unresolved,workspace_recovery_unresolved`. - Five focused real PostgreSQL, filesystem, Git, and encrypted-storage tests pass on Node 24.22.2. The success case loses an upload reply, resumes the same operation and snapshot, restores the staged/unstaged/untracked bytes, and verifies unchanged task history, lease, recovery action, finalizer, and recipe flags. - Recipe, prepared reference, and provider allocation changes during the actual upload each refuse publication. A competing native finalization owner refuses before capture. - Migration command: `pnpm exec vitest run server/src/services/remote-workspace-migration.test.ts -t 'unselected archived recipe|archived prepared source|competing native F owner'`. - All server typecheck layers, module boundary checks, and whitespace checks pass for the migration revision. The migration source bytes remain unchanged through the shared UI follow-ups. - Initial CI run 42727051535 exposed an existing planning-mode browser failure: shard 3/8 passed 33 cases but the refreshed task mode did not appear. The same issue occurred twice on #20418. A real local regression proved that initial cached data could leave the composer in its old mode. This path does not invoke migration. - Review then exposed genuine defects in the initial shared UI repair: an optimistic save rollback could reset a failed draft, and an earlier send could replace a newer draft choice. Recovered delivery also left a consumed choice pinned. All three have real RED→GREEN controls. The final shared fix uses an explicit nullable override, a choice generation, and one attempt-bound settlement owner for normal and recovered success, with no value-equality inference or durable payload changes. - Exact shared UI source now passes all 145 composer tests (2.88s), the original desktop/mobile planning browser case (15.5s; assertions and timeouts unchanged), token gates, and the canonical UI typecheck. The test harness uses the full persisted `IssueWorkMode` type, including `skill_test`, to fix the observed CI typing failure. - These UI results are reused from the identical shared source in #20418 through `ba1f85f18085dd0e84c594ed0cb68d5bf817c93c`. The unchanged planning browser pass is on the explicit-state model before the later settlement-helper extraction. The final receipt/resend controls, full composer suite, typecheck, and token gates include that extraction. They do not claim a local browser run on this entire combined branch. Fresh required CI and review qualify this PR head. - Previous-release state: existing recipe, v3 prepared reference, and journal shapes carry forward unchanged. A saved partial operation resumes with the same IDs. Migration does not certify remote file recovery or provider termination. Live provider recovery and hosted migration remain separate acceptance steps. ## Risks The change admits one more source class into an existing preservation path. An incorrect proof could publish incomplete file authority. The canonical recipe validation, full authenticated restore, native finalization locks, source reinspection, and publication checks remain mandatory. Pending remote data stays pending and retains its original allocation and reference. The shared UI repair updates only an unchanged draft mode; its regression checks preserve a local user choice. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository tools, and code execution. The runtime does not expose a deployment suffix or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandPaperclip
|
3040448da5 |
fix(workspaces): refresh saved cohort source proofs on resume (#20429)
## Thinking Path > - Paperclip preserves agent work when a control-plane server is replaced. > - Online workspace imports save exact cohort, operation and snapshot identities for restart. > - A cohort proof also includes the complete current companion source scope. > - An independent companion import removes that companion from the local scope. > - The saved cohort then fails resume even when every saved member is unchanged. > - This pull request rechecks the current scope under fresh locks and refreshes its proof for all members in one transaction. > - The benefit is restartable online migration while independent work progresses. ## Linked Issues or Issue Description Refs: #19873, #20394, #20418. Related PR search found the original cohort owner, recovery-proof refresh and separate child-verification reuse. This fix addresses cohort scope freshness. **What happened?** An interrupted cohort rejects resume with `workspace_cohort_membership_changed` after a nonmember companion is migrated. The saved source proof includes companion workspace and task IDs. The exact saved members and their fingerprints can remain unchanged. **Expected behavior** The same saved cohort must resume after fresh admission. It must keep all member, operation and snapshot IDs. Changed members, active owners, changed journals and lost source locks must still refuse publication. **Steps to reproduce** 1. Start a two-member cohort and interrupt the second upload after the first archive is saved. 2. Import an archived nonmember companion through the existing canonical migration owner. 3. Resume the same two-member cohort. The original implementation refuses before it acquires the source fence. **Paperclip version or commit** Reproduced on master `3a5572c9e5`. **Deployment mode** Online administrative workspace migration with PostgreSQL and authenticated snapshot storage. ## What Changed - Admit a changed aggregate scope proof only when every saved member has a running journal and its current fingerprint matches both saved fingerprints. - Keep partial reservations on the original strict aggregate-proof path. Keep exact cohort and operation membership checks. - Run the existing source, lifecycle, recovery and finalizer admission before refresh. Lock member rows, inspect the current scope again, and compare every journal in one transaction. - Change only `cohortMigration.sourceProof`. Preserve all other metadata, identities, archive and recovery records. Abort the complete refresh on cancellation, a changed journal or a lost fence. - Extend the existing real PostgreSQL fixture with partial upload, canonical companion migration, refusal controls, transaction rollback, cold archive restore and replay. - Document the proof lifetime and resume boundary. ## Verification - Canonical Node24 worktree preflight passed. Plugin SDK build prerequisites passed. - Genuine RED on unchanged product: the real partial-upload and companion-import sequence fails with `workspace_cohort_membership_changed` (1 failed; 22 intentionally not selected; 10.44 seconds). - The identical positive passes after the fix (1 passed; 22 intentionally not selected; 9.87 seconds). - The complete focused cohort file passes: 23 tests in 33.33 seconds. Existing controls include changed member fingerprints, foreign and completed journals, active operations, peer cancellation, actual source-fence connection loss and outer-commit failure. - The new sequence also checks a held source lock, a held finalizer lock, cancellation before refresh, and an injected second-member update failure. The failed update rolls back every proof change. Both saved archives restore tracked and untracked work, and replay uses the same cohort. - After one final read-only preflight assertion, that complete new sequence passes again in 14.52 seconds with 22 existing cases intentionally not selected. Server TypeScript passes on the final files. Module boundaries and `git diff --check` pass. - Commands: `pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts`; final case selection: `-t 'same uploaded cohort'`; `pnpm --filter @paperclipai/server exec tsc --noEmit`; `node scripts/check-module-boundaries.mjs`. - Initial local setup attempts remain nonpasses: sandbox PostgreSQL could not bind localhost, then the new archived companion fixture used a noncanonical repository folder. The corrected fixture uses the existing managed repository path. Neither setup failure is counted as the product RED. - Fresh [Greptile review](https://github.com/paperclipai/paperclip/pull/20429#issuecomment-6755862789) is 5/5 on exact head `6c640c4667b136e5416c1375f491729cf4bb9b49`, with zero inline threads. Required final-head CI is running. Hosted acceptance is not claimed by this PR. ## Risks - The old aggregate proof contains only a hash. Refresh therefore requires durable fingerprints for every saved member and repeats all current admission guards. A partially reserved cohort cannot use this path. - A stale proof must never hide a changed member or a new writer. Current source inspection, P/I/L/F locks, locked member rows, complete journal compare-and-swap and the existing capture and publication checks remain authoritative. - The all-member update must stay atomic. A database fault or cancellation rolls it back. The original cohort, operation and snapshot IDs remain fixed. - The change adds one bounded transaction only when a fully saved cohort's scope proof changes. It adds no recurring work, schema, provider, archive format, concurrency or deployment changes. ## Model Used OpenAI Codex, GPT-6 family, with repository tools and code execution. The runtime does not expose a more specific deployment identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
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Nicky LeachandPaperclip
|
3a5572c9e5 |
Extend login PTY contracts for existing computers (#20410)
## Thinking Path
> - Paperclip manages agent execution across environments.
> - Environment providers own execution resources.
> - Codex and Claude already share the login PTY transport.
> - A login on an existing computer needs its own allocation and
deadline.
> - Input retries must retain their identity.
> - Codex also needs a fixed credential-file read; Claude already
returns its token through PTY output.
> - This change extends the shared contract and keeps both existing
provider parsers.
## Linked Issues or Issue Description
**Problem**
The existing login contract assumes a temporary sandbox. It cannot
describe a login allocation on an existing computer or export its fixed
credential result without generic execution.
**Proposed solution**
Add shared allocation purpose, command identity, PTY deadline, and input
identity fields for both Codex and Claude. Add one optional
credential-result hook for Codex's auth.json file.
**Alternatives considered**
A separate Claude login implementation would duplicate the current
setup-token parser and owner-bound credential writer. Claude continues
to use that existing path. The new artifact hook is Codex-specific
because Claude's setup-token result comes through the existing shared
PTY output stream.
## What Changed
- Export the login contract types from the main SDK entry point.
- Forward login purpose and command through plugin allocation and retain
them in lease metadata.
- Forward the PTY deadline and give each input write a stable identity.
- End a login route when the worker cannot confirm input delivery.
- Preserve the opening company scope for input, stop, and close
callbacks.
- Advertise and dispatch the optional fixed Codex credential-result
hook.
The allocation, deadline, input, output, and cleanup contracts serve
both providers. This PR does not enable either provider on an existing
computer. The dependent consumer PR connects admission, services,
credential completion, and UI for both providers.
## Verification
- Close-ordering regression: all 91 host worker-manager tests passed,
including concurrent close callers waiting behind a held plugin
acknowledgement after input failure. Server TypeScript check passed. All
current CI gates, ordinary review, and the selected follow-up review
pass on
|
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DottaandClaude Opus 5.5
|
347d85fef3 |
perf(chat): index GitHub review lookups and share review-wait reads (#20400)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - GitHub chat endpoints let agents review pull requests. The server reads review state when it lists issues and when it updates GitHub checks. > - On a hosted instance, two GitHub review queries used the most total database time. One query ran about 660,000 times at about 33 ms. The other query ran about 10,000 times at about 1 s. > - The first query finds a source comment's chat link. No index covers `chat_message_links.comment_id`, so each call reads the full table. Issue lists also read the same review waits two times per request. > - The second query joins deliveries, links and runs on a JSON key. The planner walks the agent's run history in creation order and reads each run's context. > - This pull request adds four concurrent indexes, splits the run lookup into two small reads, and shares review-wait reads in one issue-list request. > - The benefit is less background database load, so request reads wait less. The results stay the same. ## Linked Issues or Issue Description **What existing behavior does this improve?** GitHub review state reads. These are the inherited review-wait lookup by source comment, and the review-check lookup of the run that a delivery's comment woke. **Subsystem affected** Server chat channels (GitHub review waits and checks), issue list attention maps, and the database schema. **Current behavior** - `readInheritedGitHubReviewWait` filters `chat_message_links` by `company_id`, `comment_id` and `direction`. No index has `comment_id`, so PostgreSQL reads the full table on each call. The run-origin check does the same lookup first. - An issue list calls the external review-wait read from the review attention map and again from the blocked-inbox attention map. The two maps read the same in-review issues. - `githubReviewCheckState` joins deliveries, links and runs with `context_snapshot->>'wakeCommentId' = comment_id::text`, sorts by `created_at desc` and takes one row. The planner reads the agent's runs in creation order and reads each run context. If no run matches yet, it reads all of them. The delivery filter on `normalized_event` and the link join on `delivery_id` also have no index. **Proposed behavior** The same rows come back from small index reads. Each issue's review wait is read one time per issue-list request. **Reason and benefit** These two statement families used about 33,000 s of database time in one cumulative statistics window. The database had about 50 concurrent active queries, and request reads waited behind this background work. **Breaking changes** None. The migration adds indexes only. ## What Changed - Migration `0456_chat_review_lookup_indexes` builds four indexes with `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. It runs through the existing top-level statement path, which repairs an invalid index on retry: - `chat_message_links_company_comment_idx` on `(company_id, comment_id)` where `comment_id is not null`. - `chat_message_links_delivery_idx` on `(delivery_id)` where `delivery_id is not null`. - `chat_deliveries_github_automatic_delivery_idx` on `(endpoint_id, normalized_event->'githubAutomatic'->'context'->>'deliveryId')` where that value is not null. - `heartbeat_runs_company_wake_comment_idx` on `(company_id, context_snapshot->>'wakeCommentId')`. This index is not partial. The planner does not use expression statistics from a partial index. Without these statistics, it estimates many matches and keeps the creation-order walk. - `githubReviewCheckState` reads the delivery's comment IDs first. If there is a comment, it reads the newest same-agent run with one of these `wakeCommentId` values. If there is no comment, it skips the run read. The comparison stays text equality on `comment_id::text`. - `createExternalReviewWaitReader` shares one read per issue between the review and blocked-inbox attention maps of one issue-list request. The reader exists only for that request. - `doc/DATABASE.md` describes the indexes and the new read order. - `scripts/benchmark-review-lookup-indexes.ts` compares the pre-fix and new code with and without the indexes. `scripts/benchmark-review-lookup-index-migration.ts` times the migration on a large synthetic database. ## Verification Local SQL measurements on a synthetic fixture. They are not production timings. Environment: embedded PostgreSQL 18.1, baseline revision `02bfe71a6b`. Fixture: 50,000 links, 5,000 deliveries with about 2 KiB events, and 4,000 runs with about 12 KiB incompressible contexts. The wake run is in the middle of the run history. Each value is the median server execution time from `EXPLAIN ANALYZE` (2 warmups, 9 samples). The order was: no indexes, indexes, then no indexes again. | Caller and statement | Before (no indexes, two passes) | After | Shared buffers before → after | | --- | --- | --- | --- | | Inherited review wait, link by source comment (same SQL) | 2.72 / 2.36 ms | 0.076 ms | 929 → 12 | | Review check, wake run found | 31.9 / 21.9 ms | 0.29 ms (two statements) | 25,776 → 62 | | Review check, no wake run yet | 71.0 / 47.5 ms | 0.06 ms (two statements) | 34,861 → 12 | - Indexes alone do not fix the review check. The old SQL with the new indexes took 8.6 ms (run found) and 29.7 ms (no run), because it still walked the run history. The new SQL without the new indexes was neutral (23.5 and 35.1 ms). - Service wall times on this shared machine were noisy, so the table reports server execution time. - Correctness: the benchmark fails unless the inherited statement returns the same positional rows in each index state. The check service result and the final wake-run rows of the new code must also match the pre-fix module for both cases. - Migration timing, normal migration runner, synthetic data: 200,000 runs (1.8 GB with 8 KiB incompressible contexts), 500,000 links and 100,000 deliveries. First run 4.2 s; rerun 0.38 s. Separate builds: links by comment 1.5 s, run wake comment 1.1 s, deliveries 0.7 s, links by delivery 0.3 s. All indexes were valid. The run index was 8.3 MB. - New tests: - `server/src/__tests__/github-review-check-state.test.ts` checks that the newest same-agent run is selected. It also checks that other agents, other companies, uppercase IDs, non-string values, list-only `wakeCommentIds`, comment-less links and unknown deliveries do not match. It checks that the generated statements can use the new indexes. - `server/src/services/native-runtime/external-review-wait.test.ts` checks that the reader reads each issue one time, keeps concurrent callers correct, and rejects all waiting callers when a read fails. - Red/green: with the pre-fix `review-check-state.ts`, the behavior test passes and the index test fails. With this change, both pass. - Focused runs pass: `issue-blocker-attention`, `heartbeat-issue-liveness-escalation`, review-wait, review-check-state, external-review-wait, review-repair (106 tests), and `external-chat-wait.integration` (285 tests). `pnpm --filter @paperclipai/server typecheck` and `pnpm --filter @paperclipai/db check:migrations` pass. Commands: ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-review-lookup-indexes.ts --baseline-ref=02bfe71a6b pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-review-lookup-index-migration.ts ``` ## Risks - The migration builds four indexes concurrently. It does not block writes. On a large database, the run index reads every run context one time. The local run took 1.1 s for 1.8 GB from a warm cache. Cold storage on smaller compute can be slower. - The run index adds one entry for each run insert and for each run update that is not a heap-only update. Many runs have no `wakeCommentId`, so these entries hold a null key. - The review check now sends two statements instead of one when a delivery has a comment. Each statement reads only a few index entries. - When two matching runs have the same `created_at`, either can be selected. The previous query had the same tie behavior. - This change does not change the number of in-review issues that one issue list reads. The blocked-inbox map still reads all in-review issues of the company. A smaller scope needs a separate change to the liveness classifier. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`) by Anthropic, in Claude Code with tool use (shell, file edits, local PostgreSQL benchmarks). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
326df52673 |
perf(api): rank Mine inbox candidates from the participation set (#20413)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Mine inbox reads `GET /api/companies/:companyId/inbox/mine`. Its
main query is `issueService.list` with "touched by me", "not archived by
me", six statuses including `done`, and `LIMIT 100` by canonical last
activity.
> - That query evaluates `touchedByUserCondition` (a five-way OR of
EXISTS) on every status-matching issue in the company. Because `done` is
included, the scan grows with company history, not with the user's work.
> - The unread badge already solved the same problem with a UNION of
indexed participation sources (#17973). The list path did not.
> - This pull request makes the Mine list rank page ids from that same
participation UNION, then load full rows (with the expensive select-list
subqueries) only for the 100 selected ids.
> - The benefit is that the main Mine query scales with the user's
participation instead of the company's issue count. Results stay
identical, and a new test proves it against the original scan.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The latency of the Mine inbox snapshot, `GET
/api/companies/:companyId/inbox/mine`.
**Subsystem affected**
Server: issue list service (`server/src/services/issues.ts`) and the
Mine route.
**Current behavior**
Measured on 2026-11-09: 280–570 ms server time on a dev instance and
1.9–3.2 s on staging. The list query scans every status-matching issue
(28k of 30k in the fixture below) to test participation, then sorts the
touched ones.
**Proposed behavior**
The list query reads only the user's participation set and computes the
row projection only for the page.
**Reason and benefit**
Inbox opens are frequent. The old cost grows with every completed task
in the company.
Refs #17973 (same UNION for the unread badge).
## What Changed
- Extracted the participation UNION from `unreadInboxIssueIds` into
`mineParticipationIssueIds()`. The unread badge uses it unchanged.
- New `IssueFilters.touchedCandidates: "participation"`. When it is set
with `touchedByUserId` (and there is no search and no
`oneChildPerParent`), `list`:
1. replaces `touchedByUserCondition` with `issues.id IN (<participation
UNION>)`. Each UNION member is one OR branch of the old condition, so
the set is the same;
2. runs a narrow `candidates` query (`SELECT id … WHERE <all other
filters> ORDER BY <same order> LIMIT/OFFSET`);
3. loads the full projection for only those ids (re-checking company,
visibility and the read condition), and restores the phase 1 order.
- Only the Mine route sets the flag. Every other `svc.list` caller keeps
the old SQL.
- A new Server-Timing phase, `inbox_issues_candidates`.
- `server/src/__tests__/inbox-mine-candidates.test.ts`: a
result-equivalence test.
- `scripts/benchmark-inbox-mine.ts`: a local benchmark that seeds a
large fixture, compares full payloads, and records `EXPLAIN (ANALYZE,
BUFFERS)` per query.
### Not changed, with evidence
- **Recomputed comment/activity maxima** (`lastActivityStatsForIssues`):
0.9 + 0.2 ms per call in the plans. Not worth a second code path.
- **Touched condition inside `userCommentStatsForIssues`**: 1.4–2.1 ms.
Not changed.
- **`liveDescendantCountMapForIssues`**: 12 ms at 30k issues and 40 ms
at 90k. It now costs about as much as the list query. It scans all live
runs and hashes all company issues. It is company-wide work, outside the
candidate selection, so I left it for a separate change.
## Verification
### Correctness
`inbox-mine-candidates.test.ts` runs the old scan and the new path on
the same data. It asserts equal ordered ids and equal full JSON
payloads. Fixture: 170+ touched issues (more than one page, with tied
timestamps) plus these edge cases:
- included: created by me, assigned to me only, user activity, my direct
comment, `done`, pending request addressed to me, archived then
re-activated by a newer outside comment, read state with a later agent
comment, a live child (live descendant count);
- excluded: archived with no newer activity, mention-only, read audit
only (`issue.read_marked`), uppercase entity id, channel-sourced
comment, agent-created with my user id, `cancelled`, hidden, harness,
plugin operation, private to another user (`issueReadSqlCondition`),
answered request, untouched issues, another company.
It also compares other shapes: no archive filter, `status=done` with the
full projection, `offset`/`limit`, ascending order, unrestricted read
condition, a second user, and a user with no participation. Mutation
check: removing the comment source from the UNION makes the test fail.
The benchmark also asserts identical full payloads for every sample of
both arms.
Focused suites (local): `inbox-mine-candidates`, `inbox-mine-routes`,
`authorization-privacy-query`, `issues-unread-inbox`,
`inbox-archive-routes`, `issues-assignee-unread`,
`issues-creation-visibility` — all pass.
### Performance (local SQL measurements)
Command: `pnpm --filter @paperclipai/server exec tsx
../scripts/benchmark-inbox-mine.ts --baseline-ref=18c3f4ef7b
--issues=<N> [--touch-density=<d>]`. Baseline =
|
||
|
DottaandClaude Opus 5.5
|
4a2eb920cf |
fix(storage): wait out a store outage on a run's critical path instead of failing it (#20299)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A cloud instance keeps run logs and evidence in object storage, so a run touches the store as soon as it starts > - In storage chaos wave `w-20261109T145628-s9902` (ST1: 75–176 s windows where every S3 call returns 503), only 1 of 8 tasks finished. A run starting or resuming during an outage failed within a second as `adapter_failed`, generic recovery burned its attempts seconds apart, the task was escalated to the board, and the user saw the raw S3 error > - This pull request treats a transient storage error as an infrastructure wait: the run is retried on a minute-scale schedule, rapid recovery is suppressed, the board shows it as working, and the run error says storage was unavailable > - The benefit is that a store outage of several minutes delays work instead of failing and stranding it ## Linked Issues or Issue Description Refs #19831. Storage chaos wave `w-20261109T145628-s9902` (master `610b54f551`, `--storage s3`, ST1). **Where the run fails.** At run start or resume, `run-output` `begin` opens the run log: `getRunLogStore().begin` → object run log store → object byte journal `claim` → S3 conditional PUT. The journal retries only 3 times within about 300 ms, so a 503 escapes and fails the run as `adapter_failed`. The async stack ends in the SDK middleware with no app frame. `log_store` stays null on the failed run, which pins the claim. **What followed.** - `failRun` released the issue into generic immediate recovery. Recovery retried 1–2 s apart inside the outage (t01: 14:58:33, :35, :59, 14:59:01), then stopped and opened a board-owned `stranded_assigned_issue` action. These are the open recovery actions on CHA-1, CHA-4, CHA-7 and CHA-8; a later Retry hit the outage again and escalated the same way. - The run error was the raw S3 text ("Injected storage outage"). **Slow store (ST2, `w-20261109T151946-s9903`).** With about 9.7 s of added latency per call, the same claim hit the journal's 15 s per-operation deadline (`AbortSignal.timeout(15_000)`). The run failed after about 36 s with `AbortError: Request aborted` and burned 3 runs the same way; 4 of 8 tasks needed a Retry. t02/t03 (Retry parked with `process_identity_missing`) are a separate native-recovery class and are handled in a follow-up. **Daytona storage chaos ST1 (`w-20261109T161202-s9912`, 1/8):** with S3 returning 503 for 72 to 154 s at a time: - Workspace restore failed at once (`remote_workspace_restore_failed: step=snapshot_download; storage=provider_error`), three times in 40 s, then `setup_failed`. It left an active recovery action behind. - Runs reattached after a restart died within 2 s on the run-log claim, then became reconciliation-required. - Setup failed on other storage reads. - 6 of 7 failures needed a UI Retry. So the rule here is one class rule: a transient store error on a run's critical path waits, it never fails the run. ## What Changed - New `server/src/storage/storage-unavailable.ts`: - `isStorageUnavailableError` reads the recorded storage failure diagnostics first, then the SDK error shape. Unavailable means 429/500/502/503/504, the S3 throttling and timeout names, network codes (`ECONNRESET`, `ECONNREFUSED`, `ETIMEDOUT`, `EPIPE`, `EAI_AGAIN`, `ENOTFOUND`), or an `AbortError` whose cause is a `TimeoutError` (a per-operation deadline). 403, 404 and 412 are not outages, and neither is an abort caused by the run's own Stop. - It defines the `storage_unavailable` code, the `storage_unavailable_wait` retry reason, the retry policy (60 s × 10 attempts, about 10 minutes) and the user-facing message. - `server/src/services/heartbeat/run-completion.ts`: - `failRun` classifies such a failure as `storage_unavailable` with the plain message. - Unless native recovery owns the run, it schedules the storage wait with `scheduleBoundedRetryForRun`, skips the interaction-continuation retry, and releases the issue with `suppressImmediateRecovery`. - `failRunSetup` uses the same policy for this code. - `server/src/services/heartbeat/retries.ts`: `storage_unavailable` joins the transient infrastructure codes. It gets its own retry budget and policy, like `runner_revision_mismatch`. - `server/src/services/task-interruption-presentation.ts`: `storage_unavailable_wait` is a resource wait, so the board shows the task as working with no Retry while it waits. - **One shared outage wait for the run's critical path** (`server/src/storage/storage-unavailable.ts`): - `retryThroughStorageOutage` retries a transient store failure with backoff (2 s doubling to 30 s) until that storage operation's outage has lasted 5 minutes, then gives the error back. The outermost wait of an operation records its first failure, and nested and parallel waits inside it share that start; no other request's success extends it. Shared probes and shared reads run under their own scope, so one run's Stop never cancels work another run waits on. A stop signal ends the wait, and non-outage errors are never retried. - Inside `waitOutStorageOutages`, every replayable S3 request waits instead of failing: get, head, delete, buffered and file puts, and multipart create, file parts and complete. A consumed upload stream is never resent, and requests outside the scope keep failing fast. - The scope covers run execution (`heartbeat.ts` `executeRun`: setup, workspace restore, run-log claim and the run itself), plus `loadWorkspaceSnapshotArchive` and `uploadWorkspaceSnapshot`, which copy-back and recovery workers use too. - The run-log claim retries as a whole, because the journal bounds each operation with a 15 s deadline. - Past the budget, the run takes the bounded `storage_unavailable` wait below. - The classifier follows the error's `cause` chain, so a restore failure wrapping an outage counts. `failRunSetup` checks storage before restore failures, so that case takes the storage wait instead of two quick retries and an escalation (the R6 leak). - `object-byte-journal.ts`: when its deadline expires, the journal rethrows the recorded storage error instead of a bare `TimeoutError`. ## Verification Red/green (each new test fails against master and passes with this PR): - `run-completion.test.ts` "waits a minute and suppresses rapid recovery when a run fails because storage is unavailable (storage chaos ST1)". An S3-shaped 503 records `storage_unavailable` with the plain message (no raw S3 text), schedules `STORAGE_UNAVAILABLE_RETRY`, releases with `suppressImmediateRecovery: true`, and skips the continuation retry. "keeps an ordinary adapter failure on the normal recovery path" guards the default. - `task-interruption-query.test.ts` "does not present an overdue storage_unavailable_wait wait as a failed attempt": working, `canRetry: false`. - `storage-unavailable.test.ts`: which errors count as an outage and which do not, including recorded diagnostics, a deadline-aborted call (ST2), and a Stop-aborted call that must not count. Static checks: - `tsc --noEmit` passes for `server`. Live verification: Phase 3 will rerun ST1 (seed 9902) with the MinIO fault proxy after merge. - `server/src/__tests__/storage-outage-wait.test.ts` runs against a local S3 that answers 503 for 3 s: - Inside the scope, a snapshot `getObject` and a run-log conditional PUT succeed once the store is back. - Outside it, a request fails fast. - A stop ends the wait. - Unit cases cover the budget, non-outage errors, and a `RemoteWorkspaceRestoreError` wrapping an outage. - `run-completion.test.ts`: a setup failure from a restore that wrapped an outage takes the storage wait (red before). - `object-byte-journal.test.ts`: a real `claim` whose head PUT hits its deadline is classified as a storage outage (red before). ## Risks - A storage outage now holds a task for up to about 10 minutes of automatic waits instead of escalating within seconds. A longer outage still ends in the existing board recovery. - A run whose failure is misclassified as storage-unavailable waits instead of using fast recovery. The classifier accepts only server-side or network failures from the storage SDK, never 4xx answers. - No schema change. - A run can now wait until a storage outage has lasted 5 minutes before it fails over to the bounded wait. It shows as working throughout, and Stop ends the wait. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edits). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandClaude Opus 5.5
|
0116e45958 |
perf(db): index pending budget Stops instead of scanning all run results (#20391)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Budget enforcement stops agent runs when a budget hard limit is reached. The stop intent is saved in each run's `result_json` until run control delivers it. > - The budget worker, run control, and the idle-sleep check find these pending stops with a predicate on `result_json`. No index supports that predicate. > - Each check therefore reads every heartbeat run and its large result JSON from TOAST. On a hosted database, this statement family was among the most expensive: about 8,000 calls at about 1 s each, about 9,800 s in total. > - Pending stops are rare. The predicate is constant, so a partial index can contain only those rows. > - This pull request adds that partial index. The SQL that the server sends does not change. > - The benefit is that each check reads a few index entries instead of the full table. The database has more capacity for request work. ## Linked Issues or Issue Description **What existing behavior does this improve?** The check for committed budget Stops that are not delivered yet. The budget worker runs it each time it looks for work (`hasPendingBudgetEnforcement`), and again for each delivery pass (`listPendingBudgetCancellationScopes`). Run control and the idle-sleep check use the same predicate. **Subsystem affected** Budget enforcement in the server (`server/src/services/heartbeat/budget-cancellation.ts`, `server/src/services/budgets.ts`, `server/src/services/heartbeat/run-control.ts`, `server/src/services/idle-sleep-safety.ts`) and the `heartbeat_runs` schema in `packages/db`. **Current behavior** The query groups all rows of `heartbeat_runs` and reads `result_json->'startupCancellation'->'budgetEnforcement'` for each row. A limit of 1 does not help, because the group and sort occur before the limit. Cost grows with the run history, not with the number of pending stops. **Proposed behavior** A partial index, `heartbeat_runs_pending_budget_cancellation_idx`, contains only runs with a pending budget Stop. The planner uses it for all four callers. The results are the same. **Reason and benefit** Local SQL measurements show a 300x to 1,000x decrease in time and buffer reads (see Verification). **Breaking changes** None. ## What Changed - Added the partial index `heartbeat_runs_pending_budget_cancellation_idx` on `heartbeat_runs (company_id)`. Its predicate is identical to `pendingBudgetRunCancellationPredicate`. - Added migration `0455_pending_budget_cancellation_index.sql`. It uses `CREATE INDEX CONCURRENTLY IF NOT EXISTS`, and it is in the list of migrations that run outside a transaction, as `0436` is. - Moved the scoped run-control read and the idle-sleep check into exported builders in `budget-cancellation.ts`, next to the scope list query. The SQL does not change. The callers and the test now share the same statements. - Added a real PostgreSQL regression test. It checks that delivered, malformed, and missing intents are not pending. It also EXPLAINs the statements that the callers send (scope list with limit 1 and 100, scoped read, `EXISTS` check) and requires the new index in each plan. If a person changes a query shape, the server predicate, or the index predicate, the test fails. - Added `scripts/benchmark-budget-cancellation-scan.ts`. It captures the SQL that the real service sends, then compares the plans, timings, and complete rows with and without the index. - Updated `doc/DATABASE.md`. ## Verification Red/green regression test: - Before the migration, the new test failed: the plan was `Seq Scan` with the predicate as a filter. - After the migration: `npx vitest run src/services/heartbeat/budget-cancellation.test.ts` passes (17 tests). - Also passed: `src/__tests__/budgets-service.test.ts`, `src/__tests__/idle-sleep-diagnostics-postgres.test.ts`, `src/services/budget-resume-continuation.test.ts`. - `pnpm --filter @paperclipai/db check:migrations`, and typecheck of `@paperclipai/db` and `@paperclipai/server` pass. Performance and result equality (local SQL measurements only): ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-budget-cancellation-scan.ts --runs=20000 --payload-kib=16 [--reverse] ``` - Fixture: embedded PostgreSQL 18.1. 20,241 runs in 2 companies, with incompressible result JSON of about 16 KiB (table 379 MB). 40 pending stops in 6 scopes, 200 delivered or malformed decoys, and 1 cross-company intent. - The SQL is the same in both treatments. The script toggles only the new index. 2 warmups and 7 samples per query. Rows are compared outside the timed part. Ordered queries must match in order. The scoped run-control read has no `ORDER BY`, so it is compared as a multiset. | Query (caller) | Baseline median | With index median | Shared buffers | | --- | --- | --- | --- | | `listPendingBudgetCancellationScopes(db, 1)` (worker `hasPending`) | 688 ms | 2.1 ms | 243,500 → 1,158 | | `listPendingBudgetCancellationScopes(db)` (delivery) | 799 ms | 1.4 ms | 243,500 → 1,158 | | Scoped pending runs (run control) | 357 ms | 1.1 ms | 121,835 → 322 | | `EXISTS` pending (idle-sleep check) | 440 ms | 0.37 ms | 240,560 → 2 | - Reverse order (index first) gave the same result: 524 ms → 1.6 ms, 464 ms → 1.4 ms, 306 ms → 1.0 ms, 306 ms → 0.42 ms. - Plans change from `Seq Scan` (or a broad bitmap scan) to `Index Scan` or `Index Only Scan` on the new index. - All result rows are equal in every run. Migration duration: - 20,241 runs (379 MB): index build 2.0 s to 3.9 s. - 200,241 runs with 8 KiB result JSON (2.1 GB): index build 5.6 s. With this table size, the four queries change from 1,148 / 879 / 514 / 4,392 ms to 1.1 / 1.2 / 0.85 / 8.3 ms. - The build is concurrent, so it does not block run writes. ## Risks - Migration: the build reads every run's result JSON one time. It is concurrent and resumable (`IF NOT EXISTS`). The executor repairs an invalid concurrent index on retry. - Write cost: run writes evaluate the index predicate. The index contains very few rows, so the extra cost is small. - Predicate drift: if a later change edits only one of the two predicates, the planner cannot use the index. The new regression test detects this. - The hosted timings are not measured yet. The local numbers come from a synthetic fixture. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
ab80fea62f |
perf(recovery): probe run bindings per comment in the lost-wake check (#20412)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The ownership reconciler finds user comments whose wake a restart lost, and it saves a wake for them (plan invariant 4) > - Its lost-wake check matched a task's runs with one OR across the legacy context ID and the native issue column > - With that OR, PostgreSQL can join runs only by company. It then tests each recent comment against every run of its company and reads each run's context > - On a hosted staging database, this statement used about 23 s per call on average (384 calls, about 8,900 s in total). One call ran for 35 s. Other requests waited behind it > - This pull request reads the check in three stages and probes the two run bindings separately with existing indexes > - The benefit is the same result with bounded, index-driven work for each recent comment ## Linked Issues or Issue Description **What happened?** The reconciler's user-comment lost-wake check was one of the most expensive statements on a hosted staging database. Query statistics showed 384 calls with a mean of about 23 s. One active call was seen at 35 s. The database compute was busy, and short authentication reads waited behind long statements. The statement matched runs with `(context_snapshot->>'issueId' = issue OR native_issue_id = issue)` in three subqueries. The OR gives PostgreSQL no join key except `company_id`. A local plan on synthetic data showed the cost: a hash join of 273 comments against all 38,002 runs, which took 1.0 s of a 1.3 s statement. The work grows with recent comments multiplied by the company's run count, and each test reads a run context. **Expected behavior** Each recent comment uses a small number of indexed probes. The check returns the same comments in the same order, with the same limit and grace logic. **Steps to reproduce** 1. Seed a company with a deep run history and a few hundred recent user comments. 2. Let some recent comments have no wake (for example, after a restart lost the wake of a steered comment). 3. Run the check. PostgreSQL can pick a hash join on `company_id` with the OR as a join filter. With nested loops off, the old statement takes seconds. The local benchmark below shows this. **Paperclip version or commit** Baseline: `02bfe71a6b`. **Deployment mode** Server with PostgreSQL. Local proof uses disposable PostgreSQL 18.1. Production and staging use hosted PostgreSQL. Related: the earlier change that split native and legacy bindings for other ownership reads (see the "Execution recovery query performance" section in `doc/DATABASE.md`). A search found no open pull request for this check. ## What Changed - `checkUserCommentsWithoutWake` reads in three materialized stages: 1. Recent user comments on assigned, non-conversation tasks that no wake request carries. This stage keeps the same issue, status and agent-closed rules. 2. Of those, comments with no live or later run and with at least one earlier run. 3. Of those, comments that no live run acknowledged in an item event (the steer check). Only this stage reads event payloads. - Each run lookup is two probes: one on the legacy context ID and one on the native issue column. Both use existing indexes. `exists (A or B)` becomes `exists (A) or exists (B)`, which is logically the same. - Each probe ends with `offset 0`. This keeps it a per-row index lookup. Without it, PostgreSQL can build a hashed subplan over all runs, or a hash join over all item events of the company. The repository already uses this fence in `execution-blocker.ts`. - The final `order by c.created_at limit N`, the projection, the grace window and the reported reason do not change. - Add `scripts/benchmark-comment-wake-check.ts`. It loads the check from an explicit baseline commit and from the working tree, and it compares the complete service result and the complete positional SQL rows before it records time. - Add a regression test for each run binding on its own: native only, legacy only, live run, later run, steered run, an acknowledgement before the comment, a log-only mention, a run that ended before the comment, and a run in another company. - Document the check and the benchmark command in `doc/DATABASE.md`. - No schema change, index, migration, or new startup work. ## Verification - `pnpm exec vitest run server/src/__tests__/ownership-reconciliation-report.test.ts --maxWorkers=1`: 34 passed. This includes the existing lost-wake, restart, steered and agent-closed tests and the new binding test. - `pnpm --filter @paperclipai/server typecheck`: passed. - `pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-comment-wake-check.ts --baseline-ref=02bfe71a6b --samples=7` Benchmark setup: PostgreSQL 18.1 (embedded, local), `shared_buffers` 128 MB, `work_mem` 4 MB. All data is synthetic, with md5-hex filler so contexts and payloads do not compress well. There are two companies per fixture. Two warmup rounds, then 7 timed samples for each arm, in alternating order. Each sample runs the real check function. Before any timing, each fixture asserts that the complete check result and every positional SQL row are equal for baseline and treatment, and that the fixture reports at least one owed comment. Every timed sample also asserts the same result. | Fixture | Runs / recent comments / owed | Baseline median | Treatment median | Speedup | Hash-join plan, baseline → treatment | | --- | --- | --- | --- | --- | --- | | small | 2,541 / 50 / 6 | 8.5 ms | 2.6 ms | 3.2x | 19 ms → 3 ms | | representative | 75,502 / 750 / 75 | 26.4 ms | 23.3 ms | 1.1x | 2,262 ms → 17 ms | | lost steer wakes | 38,002 / 750 / 75 | 454.7 ms | 66.9 ms | 6.8x | 2,717 ms → 68 ms | | deep history | 150,750 / 1,125 / 114 | 26.9 ms | 18.8 ms | 1.4x | 4,006 ms → 34 ms | | busy hour | 128,750 / 5,625 / 200 (limit) | 79.2 ms | 47.4 ms | 1.7x | 20,047 ms → 75 ms | | long steered runs (stress) | 19,100 / 600 / 60 | 626.4 ms | 457.4 ms | 1.4x | 5,871 ms → 502 ms | - The table above used baseline `02bfe71a6b`, the branch base at that time. After the rebase, a repeat run with baseline `8004ad069e` (the new merge base, with the helper guard fixed to run from the repository root) gave the same picture on a busier machine: small 15.4 → 9.1 ms, lost steer wakes 1,733 → 139 ms, busy hour 103 → 65 ms, all with equal results. - The "lost steer wakes" fixture shows the slow plan with default planner settings. PostgreSQL hashed all runs by company and tested 273 comments against 38,002 runs. - The last column runs each statement once with `enable_nestloop = off`. This makes the company-only hash join that the old statement allows visible, and it shows that the new statement has no such plan. The result is checked as equal in this mode too. Staging's 23 s mean matches this growth: recent comments multiplied by the company's run count. - Shared buffers fell in every fixture except "small" with default settings (for example, busy hour 176,416 → 89,803). - Neutral path: in the "long steered runs" stress fixture, every steered comment lost its wake. These comments correctly reach the steer check. That check must read the payload of each item event after the comment in the run that was live, so it is the remaining cost. In normal operation a comment sent to a live run has a deferred wake that carries it, so stage one removes it. ## Risks - Low risk. The predicate is the same conjunction of conditions. Only the evaluation order and the probe shape change, and the benchmark asserts complete-row equality on six fixtures and in both planner modes. - Rows with the same `created_at` have no defined order, as before. The benchmark uses distinct times so positional comparison is meaningful. - `offset 0` stops PostgreSQL from turning these probes into joins. If a task someday has a very large number of runs, each probe still uses the company and issue indexes. - Upgrade safety: this change reads saved run, wake and event state only. It changes no persisted shape, run identity, or saved session, so state saved by the previous release carries forward unchanged. A cutover test is not applicable. - Not verified on the hosted database. The local proof uses synthetic data, and I did not capture a hosted plan. Confirm with a fresh query statistics window after deployment. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use (shell, file editing, local PostgreSQL) in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
|
88186fe578 |
fix(workspaces): preserve unmaterialized repository intent during migration (#20416)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Workspace migration preserves saved files when a web server becomes replaceable. > - A repository request records intent before any checkout exists. > - Online migration currently requires that request to finish, even when preparation needs credentials and has saved no repository files. > - This pull request preserves that database intent while migrating the existing workspace files. > - Normal admission still owns repository acquisition and authorization after restore. ## Linked Issues or Issue Description **What happened?** Online workspace migration refuses a pending repository request, or a request marked `needs_repair` with `repository_preparation_failed`, even when its contained checkout path does not exist. This can force an unrelated agent turn and credential acquisition before existing files can be preserved. **Expected behavior** Preserve an absent, unpinned repository request unchanged. Migrate the existing files under the normal source locks. Prepare the repository only on a later authorized admission. **Steps to reproduce** 1. Create a task-scoped local workspace with saved files and an absent repository checkout. 2. Keep its repository request pending, or let canonical preparation fail before checkout publication. 3. Attempt online workspace migration. Before this fix, it refuses with `repository_preparation_unresolved`. **Paperclip version or commit** Reproduced against master `8004ad069e`. **Deployment mode** Self-hosted control plane with PostgreSQL and local legacy workspace files. The regression uses real local PostgreSQL and independent filesystem restore. Related migration work: #20371. No duplicate open unmaterialized-request fix was found in the GitHub search. ## What Changed - Accept unchanged pending requests and canonical preparation failures only when no pin or branch exists and the contained checkout path is absent. - Require a proven online source or the existing offline writer-stop contract. - Leave companion workspace requests under their existing strict blocker. Classify the current workspace request with its filesystem check. - Extend existing migration and cold-admission fixtures. Repository rows retain their catalog, requested ref, failure state, timestamps, and identity. ## Verification - RED: the real PostgreSQL/filesystem regression produced two `repository_preparation_unresolved` failures for online pending and failed requests. Offline pending passed. Duration: 24.95 seconds. - Local server TypeScript check passed with Node 24 and pnpm 9.15.4. - GREEN on final head `eeaea6134a56397ca8c12ed8f7009a19c41d79b1`: 18 focused cases passed across the existing migration and cold-admission suites in 77.48 seconds. This covers offline pending intent, online pending/failed intent, active preparation and partial checkout refusals, strict companion requests, publication races, real archive restore, and later normal repository preparation. - The first GREEN attempt reached successful cold preparation, then failed one inherited assertion that expected the old failure code after success. The assertion now expects the canonical owner to clear it. The migration row-equality checks had already passed; no production change was needed for this assertion failure. - Final-head [PR workflow 42723571639](https://github.com/paperclipai/paperclip/actions/runs/42723571639) completed SUCCESS. The [final `ci / verify` gate](https://github.com/paperclipai/paperclip/actions/runs/42723571639/job/129531238991) passed at 2026-11-10 00:08:04 UTC. The full rollup contains 55 successful checks and 4 intentional skips, with no pending or failed checks. Greptile reviewed exact head `eeaea6134a56397ca8c12ed8f7009a19c41d79b1` at 23:52:42 UTC with 5/5, a successful check, and no inline threads. The optional `pnpm verify --explain` selection was invalidated when the assertion commit landed during selection; no verification pass is claimed from it. Focused local tests and required CI supply the verification scope. - The first local test invocation could not resolve the plugin SDK before its local build. It ran no tests. The SDK was then built and the RED regression ran successfully as a failure proof. ## Risks - The failed-request exception is limited to `repository_preparation_failed`. Unknown failures remain blocked. - Active preparation, a pin, a branch, a partial checkout, unsafe paths, and unresolved companion requests still block migration. - Migration does not edit repository intent or grant repository/task access. A restored request can still fail normal preparation if its current authorization or source is unavailable. - Offline migration retains its existing writer-stop and maintenance checks. Online migration retains its source, task, lifecycle, and publication fences. - This patch changes internal migration admission. No schema, public API, user command, or documentation contract changes. ## Model Used OpenAI Codex, GPT-6 family, with reasoning and tool use. The exact serving model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
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DottaandClaude Opus 5.5
|
50df9a19b9 |
perf(inbox): read only the execution workspaces Mine rows reference (#20388)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The Mine inbox is the first page a board user opens to see the tasks that need them > - The page loaded the company's full execution-workspace summary list and kept task rows hidden until that list arrived > - On a company with thousands of workspaces, that read checks each workspace row against the privacy predicate. It was the slowest request on the page > - The inbox needs workspace names only for the workspaces its rows reference, and only when the view shows workspace data > - This pull request adds an `ids` filter to the summary read, makes the inbox request only referenced workspaces, and stops rows from waiting for workspace data when the view does not show it > - The benefit is that Mine rows appear when the task data arrives, and the workspace read becomes a small bounded query ## Linked Issues or Issue Description **What existing behavior does this improve?** The Mine inbox (`/:companyPrefix/issues?view=mine`) shows its task rows late on companies with many execution workspaces. **Subsystem affected** Board UI inbox and the execution-workspace summary API. **Current behavior** The page calls `GET /api/companies/:id/execution-workspaces?summary=true` with no filter. On a large company this returned 8,758 rows (2.5 MB) and took 12.3 s on the server. The reveal gate included this read, so rows appeared at 13.4 s although `inbox/mine` arrived at 1.6 s. **Proposed behavior** The inbox requests summaries only for the workspaces its rows reference. Rows appear when the Mine task data arrives, unless the view shows workspace data. **Reason and benefit** The workspace read becomes a small bounded query, and it leaves the critical path for the default Mine view. **Breaking changes** None. The `ids` parameter is optional and additive. ## What Changed - `packages/shared`: add `executionWorkspaceSummaryIdsQuerySchema` (comma-separated UUIDs, 1–100 distinct values) and `EXECUTION_WORKSPACE_SUMMARY_IDS_MAX`. - `server`: `GET /companies/:companyId/execution-workspaces` accepts `ids`. Bad input returns 422. The service adds `inArray(execution_workspaces.id, ids)`. The company scope and the actor read condition still apply, so privacy does not change. - `ui/src/api/execution-workspaces.ts`: `listSummaries` accepts `ids`. New `listSummariesByIds` reads ids in chunks of 100 and concatenates the results. - `ui/src/pages/Inbox.tsx`: the workspace query is keyed on the sorted distinct `executionWorkspaceId`s of the rows the inbox holds (Mine, touched, context and remote search issues). It uses `keepPreviousData` and runs only when isolated workspaces are on and at least one id exists. - Reveal gate: rows wait for the workspace read only when workspace data changes what the rows show. This is workspace grouping, a visible Workspace column, or an active search (workspace names are searchable). Otherwise rows reveal without it. - Tests: route ids pass-through and 422 cases (non-uuid, empty, separators only, more than 100); service test for the id filter with company scope and the read condition; UI api chunking test; Inbox tests for "rows reveal while the workspace read is pending when no workspace column or grouping is active", rows waiting when the Workspace column is visible, and "shows the resolved isolated workspace name" with the id-filtered call. Follow-ups (not changed here, they still read the unfiltered list): - `ui/src/pages/LegacyInbox.tsx:772` - `ui/src/components/IssuesList.tsx:985` - `ui/src/components/LegacyIssuesList.tsx:888` - `ui/src/components/NewIssueDialog.tsx:570` (filtered by project and reuse, but not by ids) ## Verification Focused checks on this revision: - `cd server && npx vitest run src/__tests__/execution-workspaces-routes.test.ts src/__tests__/execution-workspaces-service.test.ts -t "summar|ids"`: 14 passed (embedded Postgres ran the service test). - `cd ui && npx vitest run src/api/execution-workspaces.test.ts src/pages/Inbox.test.tsx`: all passed. - `pnpm --filter @paperclipai/server --filter @paperclipai/ui --filter @paperclipai/shared typecheck`: passed. - `pnpm check:token-gates`: clean. - `pnpm verify` selected 2,481 Vitest files (the shared validator change reaches most suites). I stopped it at a 25-minute limit on a heavily loaded shared host. Before the limit, three server tests outside this change failed: `agent-commentary-skills` (skill mount), `agent-config-read-access` (24.8 s timeout) and `agent-directory-working-copies`. Required CI supplies the full coverage. - Review fix `fc3f82dae0`: when workspace data is visible, the reveal gate also waits while `keepPreviousData` supplies the previous id set's summaries. A new test switches Mine → Recent to a new workspace and checks the Recent row stays hidden until its workspace loads. It fails without the change. - Follow-up commits `bf34f84823` and `8fc743b5ca` add a 100-row Mine test with a counted workspace id scan. It fails with the old `= []` defaults and passes with the stable `NO_ISSUES` default. Performance (local, synthetic fixture): - Instance: isolated worktree instance, `authenticated` mode, signed in as a non-admin company member so the real workspace privacy predicate runs. Production UI bundle (`PAPERCLIP_UI_DEV_MIDDLEWARE=false`). Headless Chromium 1440×900, a new browser context per run (cold HTTP cache and cold query cache). macOS, Apple Silicon, with other local sessions running. - Fixture: 8,750 execution workspaces (each with a source task and a privacy-source key), 38,750 tasks, 150 Mine tasks; the Mine snapshot returns 100 rows that reference 100 workspaces. - Finish event: the first `[data-slot="task-row"]` is in the DOM. | Measurement | Before (`02bfe71a6b`) | After | | --- | --- | --- | | Cold time to rows, median of 7 | 1,209 ms (1,046–1,312) | 702 ms (567–1,209) | | Workspace summary read, server wait (time to first byte), median of 7 | 496 ms unfiltered, 2.0 MB | 18 ms with 100 ids, 22 KB | The difference of medians is 507 ms. This is close to the unfiltered read's wait on this fixture (about 550–590 ms in the browser runs). The runs were sequential batches, not alternating pairs. Limits: this fixture does not reproduce the 12.3 s server time seen on the development instance. Here the unfiltered read cost 0.5–1.7 s and grew with the company's task count. The browser gain on the original instance should be close to that instance's unfiltered read time, but I did not measure it there. ## Risks - Low risk. The `ids` filter only narrows the existing query. It does not change the read condition or the company scope. - A row whose workspace is not readable by the actor shows no workspace name, as before. - When the Workspace column or grouping is visible, rows still wait for the workspace read. That read is now small. - When the id set changes, the query refetches all chunks. Before a view first reveals, rows wait for the new summaries if workspace data is visible. After that, the previous names stay visible while a refresh loads. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with tool use (shell, file edit, headless browser). Extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandClaude Opus 5.5
|
e1010e7678 |
perf(api): per-phase Server-Timing for the Mine inbox snapshot (#20408)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work.
> - The Mine inbox page reads one snapshot: `GET
/api/companies/:companyId/inbox/mine`.
> - This read is slow. It takes 280–570 ms on a dev instance and 1.9–3.2
s on staging.
> - The response has only the total `paperclip_api` Server-Timing value.
We cannot see which phase is slow.
> - Issue detail already reports per-phase Server-Timing
(`issue-read-timing.ts`). The Mine snapshot does not.
> - This pull request adds per-phase Server-Timing to the Mine snapshot,
including each lookup inside the issue list.
> - The benefit is that DevTools on any instance shows the slow phase
directly. A follow-up PR uses it to prove a query rewrite.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The Server-Timing header of `GET /api/companies/:companyId/inbox/mine`.
**Subsystem affected**
Server API: issues routes and the issue list service.
**Current behavior**
The header has only `paperclip_api;dur=…`. Slow access checks, issue
lists, parent context, failed-run reads and list enrichment lookups all
look the same.
**Proposed behavior**
The header also has `paperclip_inbox` (total) and one `inbox_<phase>`
entry for each phase that ran.
**Reason and benefit**
We need phase evidence from staging and production to rank the slow
parts. No telemetry is sent; this is a response header only.
## What Changed
- Added `server/src/services/inbox-mine-timing.ts`. It times closed,
content-free phases and formats a Server-Timing value. It emits no spans
and no telemetry events.
- `issueService.list` accepts an optional third argument, `{ timePhase
}`. It wraps the list's own reads: `query`, `labels`, `active_runs`,
`user_stats`, `read_stats`, `last_activity`, `archives`, `blocked_by`,
`live_descendants`, `attention`. Callers that do not pass it are
unchanged.
- The Mine route reports `inbox_access`, `inbox_issues`,
`inbox_parents`, `inbox_failures`, `inbox_failure_context` and
`inbox_issues_<list phase>`. The existing middleware merges these with
`paperclip_api`.
- The index-projection list no longer awaits a `Promise.all` of
already-empty attention maps. The result is the same.
- `inbox-mine-routes.test.ts` asserts that all phases are present with a
valid duration.
## Verification
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/inbox-mine-routes.test.ts` — 6/6 pass, including the new
header assertion.
- `tsc --noEmit -p server` — no errors in the changed files.
- `pnpm verify --explain` selects 2,417 of 3,204 test files for this
change, because `services/issues.ts` is imported almost everywhere. I
did not repeat that full suite locally (AGENTS.md §7); required CI
supplies it.
- Manual: open the Mine inbox, then DevTools → Network → `inbox/mine` →
Timing. The phases show under Server Timing.
## Risks
- Low risk. The header adds about 13 short entries. Phase names are
fixed strings and contain no task data.
- `timePhase` is optional, so other `svc.list` callers do not change.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, via Claude Code with
tool use (shell, file edits). Standard context window; extended thinking
not used.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
---------
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
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DottaandClaude Opus 5.5
|
7a93cc6215 |
fix(server): redact invitation tokens from agent run logs (#20360)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People join a company through an invitation link. The link carries a bearer token in its URL path. > - An agent can create an invitation in chat and give the person the join link. > - The server writes each agent run to a run log file (`.ndjson`). This file is a plain diagnostic copy. Local agents run as the same OS user, so they can read it. > - #20343 removed invitation tokens from HTTP logs. The run log still kept the full join link and the raw token. > - This pull request removes invitation tokens from run-log chunks when the server writes them. > - The benefit is that a live join link does not stay in a file that other local agents can read. The person still gets the working link in the chat reply. ## Linked Issues or Issue Description Refs #20343 (same token policy for HTTP logs). **What happened?** An agent created an invitation in chat and replied with a `/invite/<token>` join link. The agent run log file under `data/run-logs/` kept the full token. The token was in the agent message and in the tool result. **Expected behavior** The run log keeps the route and drops the token: `/invite/***REDACTED***`. A raw `pcp_invite_...` token also becomes `***REDACTED***`. The chat reply that the person reads keeps the working join link. **Steps to reproduce** 1. Check out master. 2. Run `server/src/services/heartbeat/run-log.test.ts` from this PR. 3. The "run-log invitation token privacy" tests fail. The token stays in both the legacy text chunk and the canonical native envelope. **Paperclip version or commit** Master at the merge base of this branch. **Deployment mode** Source server, local run logs (`local_file`). The same functions also format object-store run logs. ## What Changed - Add `redactInvitationTokens()` in `server/src/middleware/invitation-token-redaction.ts`, next to the HTTP log redactor from #20343. It removes the token from `/invite/<token>` segments and from raw `pcp_invite_` tokens inside free text and JSON text. The character classes stop at JSON, Markdown and URL delimiters, so the record structure stays valid. `redact-sensitive.ts` stays byte-identical, because the chat eval pins its exact bytes before it accepts a real invitation link. - Apply it in `compactRunLogChunk()` and `redactCanonicalNativeRunLogChunk()`. These are the two functions that format every agent run-log chunk before the store writes it. The run excerpt columns use the same chunk, so they are also redacted. - `canonicalNativeRunLogRedactionForms()` also yields the earlier, unredacted projection. A run log written by an earlier release still verifies after an upgrade. - `restoreCompactedEvent()` accepts a truncated record that the earlier compactor wrote with the token. Cold recovery of such an old log still works. - Add a test that proves the chat reply comes from database run events, not from the run log. The reply keeps the full join link, and the presentation path never reads the run log. ## Verification - From `server`: `node ../node_modules/vitest/vitest.mjs run --config vitest.config.ts src/services/heartbeat/run-log.test.ts src/__tests__/invitation-token-redaction.test.ts src/__tests__/redact-sensitive.test.ts src/__tests__/heartbeat-run-log.test.ts src/__tests__/logger-invitation-redaction.test.ts src/services/native-runtime/native-run-log-watermark.test.ts src/services/native-runtime/native-run-log-recovery.test.ts src/__tests__/heartbeat-run-output.test.ts src/services/native-runtime/agent-chat-response-recovery.test.ts` passes. - Before the `run-log.ts` change, the two new redaction tests in `run-log.test.ts` failed (red), then passed (green). - `native-run-log-watermark.test.ts`: a legacy-compacted record with a token in its retained head cold-recovers. It failed with `native_log_source_coverage_unproven` before the restore fix. - `agent-chat-response-recovery.test.ts` (embedded Postgres): a final reply with a join link is saved as the exact comment with the token. No run-log read happens. - `tsc --noEmit -p server` shows no errors in the changed files. - A live chat eval (`access.invite-teammate`) run with this change confirms the run-log file has no token. The run is linked in a comment. ## Risks - Low risk. Run-log readers (run transcript view, feedback export, support inspection) now show `***REDACTED***` in place of invitation tokens. This removes a live credential from a diagnostic copy. It does not change the chat reply or the stored run events. - A path segment after `/invite/` in free text is always redacted, even if it is not a token. This loses only diagnostic detail. - A token that a provider streams across two separate chunks is not joined first. Each chunk is redacted on its own. A complete token in one chunk, such as a final message or a tool result, is removed. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandPaperclip
|
b09f17fbfd |
fix(agents): repair queued setup through task connection cards (#20361)
## Thinking Path > - Paperclip manages AI agents doing work for people. > - Agent verification must finish before an accepted task can start. > - A missing AI account default can prevent verification before a provider starts. > - Lifecycle policy treated that owned configuration refusal as a temporary failure and retried each minute. > - The accepted turn remained Queued without explaining the prerequisite. > - Park account configuration failures and reuse the task's existing inline connection card. > - Successful repair rechecks verification and releases the original queued turn under its original authority. ## Linked Issues or Issue Description **What happened?** An OpenCode agent selected the responsible user's OpenRouter default, but that default did not exist. Verification retried unchanged configuration indefinitely and its accepted task stayed Queued. **Expected behavior:** Preserve accepted work, explain the setup prerequisite, and let the appropriate person repair it using the existing task connection UI. Completion must verify the agent before starting the same queued turn. Genuine pause, approval and access gates remain effective. **Reproduction:** Create an OpenCode Runner agent with a responsible-user OpenRouter binding and no personal default; assign a task while verification is pending. The base retries verification and shows an unexplained queue. Related: #18702 handles pending task connection recovery after account repair. This PR handles the earlier agent-verification boundary. #20330 addresses a separate Codex governed-wait timeout and is already merged. ## What Changed - Share owned account-selection failure evidence through a pure library contract. Lifecycle policy parks those configuration failures with fixed, redacted guidance; temporary infrastructure errors retain their retries. - Batch setup-state reads for unstarted queued turns. Distinguish manual repair from automatic setup retries and preserve Stop, started/history state and lifecycle holds. - Reuse the existing `connection_intent` card, account selection and completion APIs. Its controller-only `agentSetup` marker accepts only never-started legacy turns; runtime tokens still require a running run. - Address the card to the lifecycle verifier's account owner, preserving the task's execution principal and private-task visibility. Attach missing cards on admission, verification, startup and full recovery, including retained retries and continuations. Repeated delivery and publication remain bounded. A new queued turn supersedes the setup card of a stopped turn; generic connection cards retain cross-run reuse. - Recheck lifecycle verification after usable-account completion, then release the existing turn through the normal readiness path. Preserve decline, Stop, reassignment and changed setup-owner gates. Fence an in-flight verification failure from overwriting a repair; add no provider wake or recurring worker. - Park owned account refusals during resume as well as initial verification. Bind setup cards to the lifecycle operation, settle obsolete deliveries, and keep explicit Retry guidance accurate. - Reuse the router’s existing lifecycle pin for setup repair without rerouting the task, advancing the pool cursor, or replacing its saved binding. Legacy direct-account cards remain readable. - Hide the incorrect Resume banner during setup, retaining genuine manual/budget pause controls. Document the execution and retry contract. ## Verification - Red: eight original behavior assertions failed on the base, including the real selector's retry decision and the real batched queue projection. Six owned selection cases failed classification. Temporary-error presentation, different task/verifier users, retained retry/continuation recovery and the setup Resume banner also have failing-before/passing-after regressions. - Green: 430 affected backend, lifecycle, shared-contract and UI tests passed before the final review corrections. Subsequent focused runs cover one inline card, real account selection/completion, duplicate delivery/publication, verification before readiness, unchanged run authority, private tasks, no extra provider wake, decline/Stop/reassignment, company isolation, invalid runtime tokens, transient retries and redacted diagnostics. - Final setup/card and generic connection-service suites: 49 tests passed. The stopped-turn case failed before the correction, then passed with real account completion, the stopped source remaining cancelled, and the replacement source remaining queued. - After rebase, all 129 focused assertions passed. The local queue suite’s 88 execution assertions passed repeatedly, but its database-fixture teardown exceeded both 30-second and 120-second hooks. An isolated queue case completed, and the setup/connection suites fully passed. The original queue test and cleanup remain unchanged; broad CI supplies the full-suite result. - Server/UI typechecks, module boundaries, token gates and diff checks passed. `pnpm verify --explain` requested broad CI because the execution-contract document changed; no redundant full local suite was substituted. - Real source acceptance: macOS arm64, Node 26.4.0, isolated embedded PostgreSQL and local board identity. Created an OpenCode/OpenRouter agent and task through the API with no default. Admission retained one unstarted turn and produced the existing inline Connect OpenRouter card. The browser opened its credential form and closed it without entering credentials. The same card/run persisted after server restart and reload, with the setup label and no incorrect Resume. The browser also reproduced Stop followed by a new queued turn retaining the stale card on the prior head. On `12f609c98372fd1e50644028db75cfcc8deb210d`, startup superseded the stale card and retained the same replacement turn, with the original turn still cancelled and no provider execution. - The earlier CI case-search failure also reproduces on exact base `0e3fdebea8257bdff11573081c76b306f12db230` without this PR. Its repair is now in master via #20371; this branch is rebased onto it and contains no API-search changes. - Staging's actual Runtime test returned “Connect an account and choose your personal default” before provider startup. The original turn later started independently on deployed code, then hit a separate workspace-export failure. Automatic file recovery subsequently marked that run successful; its task remains Blocked and the trial’s useful output is unverified. This PR is not deployed; provider authentication through its card and downstream publication remain unverified. No account, credential, default, permission or binding was changed during diagnosis. - Previous revision review: Greptile 5/5 on `12f609c98372fd1e50644028db75cfcc8deb210d`, with all four inline findings addressed and resolved. [Full CI passed](https://github.com/paperclipai/paperclip/actions/runs/42713494508) on that revision: 59 successful checks, one neutral check and three intentional skips, with no pending or failed checks. - Latest revision `976bcae993805a8a2222395bbff9394f6791b424`: resume, router and Retry-copy regressions failed before repair. Green: 92 lifecycle/setup/shared tests, 83 setup/generic-connection/router tests, and 137 UI/shared tests. Server/UI typechecks, module boundaries and token gates passed. [Full CI passed](https://github.com/paperclipai/paperclip/actions/runs/42720731137) on this exact revision: 59 successful checks and three intentional skips, with no pending or failed checks. Greptile reviewed this head at 5/5; all six review findings are addressed and resolved. Real Stop/retry acceptance retained the same replacement turn and current-operation card through two actual server restarts, with no provider execution. ## Risks - Known account configuration failures now require repair or explicit Retry. Temporary failures keep automatic retries; accepted work and authority remain intact. - The projection adds one company-scoped batch read only for unstarted queued turns. Card attachment examines at most 100 active candidates and adds no timer, worker, schema or migration. - The optional stored setup-card marker requires an aware reader during rollback. No run/session/checkpoint identity format changes. Setup presentation grants no access and cannot bypass verification or other gates. ## Model Used - OpenAI GPT-6 (Codex), with reasoning, tool use, code editing and test execution. The exact serving model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
2f47d0fadb |
perf(workspace): run portable archives in bounded CPU workers (#20404)
## Thinking Path
> - Paperclip preserves agent work when its control plane changes.
> - Workspace imports capture and verify portable filesystem archives.
> - The archive function uses asynchronous I/O but hashes and handles
manifests on the caller's JavaScript thread.
> - Concurrent imports therefore share one CPU execution context for
that work.
> - This pull request runs the same archive function in bounded native
Node workers.
> - The parent keeps all database, storage, source locks and publication
decisions.
## Linked Issues or Issue Description
**What happened?**
Concurrent administrative workspace imports can spend many minutes
capturing archives while the owning Node process uses about one CPU
core. Promise concurrency does not move hashing and manifest work off
that process's JavaScript thread.
**Expected behavior**
Independent archive calls use separate CPU execution contexts. At most
eight archive workers run in one process. Cancellation must wait for
file cleanup and actual worker exit before the caller releases its
locks.
**Steps to reproduce**
Run several workspace captures in one process. The existing wrappers
call the same archive function on the parent thread. The regression
holds eight real worker threads at a CPU barrier while the parent
remains responsive, then cancels a queued ninth call without spawning
it.
**Deployment mode**
All server callers of the portable capture and restore wrappers. Related
import work: https://github.com/paperclipai/paperclip/pull/20311 and
https://github.com/paperclipai/paperclip/pull/20394.
## What Changed
- Run the existing self-contained archive function in native workers.
Its algorithm and format stay byte-identical.
- Limit active workers to eight per process, with a 1 GiB old-generation
heap limit each. Workers stop when their owned call finishes.
- Forward cancellation to the worker's AbortController. Wait for actual
exit before returning, throwing or releasing an active slot. Cancel
queued calls before they spawn.
- Own capture scratch in a private parent-created worker temporary root.
Remove it after actual exit, including abnormal exit.
- Keep direct archive algorithm fault tests on the canonical
implementation. Add real-worker byte, manifest, restore, CPU barrier and
cancellation tests.
## Verification
- Four real-worker regressions passed: forced-exit capture scratch
cleanup; exact capture bytes/manifest and restored files/modes/links;
eight CPU barriers plus queued abort; abort cleanup joined through
actual worker exit.
- Canonical workspaceArchive declaration/body hash is unchanged from the
base:
`d6cffeab112b817fab8f65a3c0d8ecdc8d23589d37bf44ae30fe9e53213d54f4`.
- The combined archive run passed 114 cases. Three Unix-socket cases
failed because the sandbox denied listen with EPERM; a focused retry
with socket permission passed all three. The initial separate worker run
passed all three cases; the new head passed all four, including
forced-exit cleanup. All server layered typechecks and module boundary
checks passed.
- The initial
|
||
|
DottaandClaude Opus 5.5
|
c985541a57 |
perf(db): index retry-exhaustion receipts for the attention scan (#20386)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The attention feed shows runs that failed after automatic retries stopped > - To find these runs, the feed reads every `heartbeat_run_events` row of the company and filters the rows by a message prefix > - Run output makes this table very large, so each feed request does a large scan > - On a hosted test database, this one statement used the most total database time: 923 calls at a mean of 5 s (4,709 s in total) > - Request authentication waits behind this background work, so all users feel the load > - This pull request adds a small partial index that holds only the retry-exhaustion receipts > - The benefit is that the same query reads a few index entries instead of all company events ## Linked Issues or Issue Description **What existing behavior does this improve?** The attention feed query that finds retry-exhausted runs (`listAttentionExhaustedRuns`). **Subsystem affected** Server attention feed and the `heartbeat_run_events` table schema. **Current behavior** The query reads all company rows in `heartbeat_run_events`, filters them by `event_type = 'lifecycle'` and the `Bounded retry exhausted` message prefix, and then joins the few matches to failed or timed-out runs. The cost grows with all run output. It does not grow with the number of exhausted runs. **Proposed behavior** A partial index holds only the matching receipts. The query plan reads the index and joins a few rows. The query text and the result do not change. **Reason and benefit** The scan was the most expensive statement by total time on a loaded hosted database. A local reproduction shows a 54x faster query and about 116x fewer buffer reads. **Breaking changes** None. The API, the feed rows, and their order do not change. ## What Changed - Add the partial index `heartbeat_run_events_retry_exhausted_idx` on `(company_id, run_id, id DESC)`. The index covers only rows where `event_type = 'lifecycle'` and `message like 'Bounded retry exhausted%'`. - Add migration `0454`. It uses `CREATE INDEX CONCURRENTLY IF NOT EXISTS`. The migration runner runs it as a top-level statement, the same as migrations 0432, 0436 and 0450. - Add a regression test. It pins the row order (newest run first, then the newest receipt on a tie) and the latest receipt per run. It also checks that the query plan can use the new index. If the query predicate changes so that the index no longer applies, the test fails. - Add `scripts/benchmark-exhausted-run-attention.ts`. It measures the same query with and without the index, and the time to build the index. - Document the index in `doc/DATABASE.md`. ## Verification Cause and thesis. The scan cost comes from reading all company events, not from the few exhausted runs. Thesis: an index that holds only the receipts makes the query cost depend on the number of receipts, and keeps the result identical. The benchmark below confirms the thesis. Rejected alternative without a migration. I first tried a LATERAL lookup that starts from the failed and timed-out runs. On the same fixture it was about 2x slower (median 379 ms against 194 ms). It reads the full event history of each failed run with random I/O, and that costs more than one sequential scan. Local SQL benchmark (the SQL that the service generates; same SQL with and without the index): ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-exhausted-run-attention.ts --runs=30000 --events-per-run=100 --samples=9 ``` Fixture (synthetic): one company with 30,000 runs (3,819 failed or timed out) and 3.0 M events, plus a decoy company with 0.5 M events. The table is 1.4 GB. About 5% of events are `lifecycle` events. Events of 20 concurrent runs are interleaved. 1 in 23 runs has a receipt, some runs have two receipts, and output decoys contain the prefix. Two agents are terminated. Embedded PostgreSQL 18.1 on an Apple laptop. The hosted database is Neon with different compute, so the absolute times are local SQL measurements only. The script runs two cycles (without index, then with index; then with index, then without index) to expose cache bias. Each measurement has 2 warmups and 9 samples. | Query | Without index | With index | Samples and spread | Output check | | --- | --- | --- | --- | --- | | `listAttentionExhaustedRuns` | median 157 ms (96–1,271 ms) | median 3.3 ms (2.2–5.7 ms) | 18 each | 133 rows, positional rows equal in all 4 measurements | | Buffers (EXPLAIN ANALYZE) | 127,743 blocks | 5,580 blocks | | plan uses the new index (asserted) | Speedup: 48x (median), on head `ae6037b2a0` (the same SQL and index as the final head). The machine was under heavy load from other work, so the spread without the index is wide. An earlier run on the first head gave 248 ms against 4.6 ms (54x). Index build (`CREATE INDEX CONCURRENTLY` from the migration file): 1.7 s and 2.5 s for the 1.4 GB table. Index size: 152 KiB. Review fix: the query now writes `event_type = 'lifecycle'` as a SQL literal, not a bound parameter. With prepared statements, PostgreSQL can reuse a generic plan. A generic plan cannot prove that a bound parameter matches the index predicate, so it would not use the index. Tests: - `cd server && npx vitest run src/__tests__/attention-service.test.ts`: 44 passed. The new test checks a fresh plan and a forced generic plan (`plan_cache_mode = force_generic_plan` with `PREPARE`). It failed with the bound `event_type` parameter and with a changed message prefix (confirmed red), and it passes with the fix. Locally, the file's `afterAll` database cleanup hook timed out on a heavily loaded machine (load average about 28). The timeout also occurs when the new test is excluded. - `pnpm --filter @paperclipai/db check:migrations`: passed. - `pnpm --filter @paperclipai/db typecheck` and `pnpm --filter @paperclipai/server typecheck`: passed. - `pnpm verify`: see the CI results for this head. ## Risks - Migration time. A concurrent index build reads the full `heartbeat_run_events` table and does not block writes. Locally, the build took 1.2–2.5 s for 1.4 GB. The time grows linearly with the table size. I did not time the build on a production-size clone. On a database with a 5 s full company scan, I estimate the build at tens of seconds, which is in the 1–2 minute budget. This estimate is not proven. - If the build stops, PostgreSQL can leave an invalid index. The migration runner repairs invalid concurrent indexes when it runs again, and `IF NOT EXISTS` makes a rerun safe. - The index predicate must stay textually equal to the query predicate. If someone changes the message prefix or binds a predicate value as a parameter, the planner cannot use the index. The new test catches both cases, for fresh and generic plans. - Each new receipt writes one more small index entry. Receipts are rare, so the write cost is very small. - The hosted improvement is not verified until deployment. After deployment, compare a new query-statistics window for this statement. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). Standard context window and reasoning mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandClaude Opus 5.5
|
c57cd1bdb9 |
perf(server): read plugin lifecycle inbox heads in one pass (#20405)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Plugins get agent, project and agent runtime changes from the `resource_lifecycle_events` journal. Each plugin acknowledges events one resource at a time. > - The inbox page query checked each unacknowledged event against all older events of the same resource. Each check walked the acknowledged history of that resource. > - Agent runtime streams get a new event for each configuration change, so one resource can have thousands of acknowledged events. The cost grew as pending events times acknowledged history. > - On a hosted instance, three copies of this read ran for 601 seconds each, and one earlier copy ran for 19 minutes. The delivery worker runs it again after each acknowledgment. > - This pull request selects the head of each resource in one pass and keeps the same result. > - The benefit is that the page read is linear in the company journal size. In local tests it is 250x to 660x faster, and the result rows are equal. ## Linked Issues or Issue Description **What happened?** The plugin lifecycle inbox page query (`select "id", "company_id", "resource_type", "resource_id", "action", "created_at" from "resource_lifecycle_events" where ...`) ran for 601 seconds on a hosted database. Three copies were active at the same time. **Expected behavior** A lifecycle page read must stay fast when a resource has a long acknowledged history and a pending backlog. **Steps to reproduce** 1. Give a company 40 agents with 1,500 `agent_runtime` events each. 2. Acknowledge the first 1,200 events of each agent for one plugin. 3. Call `pluginLifecycleInbox(db, pluginId).list(companyId, 100, undefined, ["agent", "project", "agent_runtime"])`. 4. The read takes about 10 seconds for 60,000 events of that company. At 200,000 events it takes about 6 minutes. **Paperclip version or commit** `02bfe71a6b` (master). **Deployment mode** Hosted (PostgreSQL). Local repro uses embedded PostgreSQL 18. ## What Changed - `server/src/services/plugin-lifecycle-inbox.ts`: `list` now selects one head per resource with `DISTINCT ON (resource_type, resource_id)`. The head is the unacknowledged creation, else the oldest unacknowledged event. Then the query applies `afterId`, id order and the limit. This is the same set that the old `firstForResource` predicate admits. `acknowledge` keeps the old predicate for its single-event check. - `plugin-lifecycle-inbox.ts`: new `hasPending(companyId, types)`. It returns whether any unacknowledged event exists. Each resource with an unacknowledged event has a head, so this gives the same answer as `list(companyId, 1).length > 0`. - `server/src/services/plugin-lifecycle-delivery.ts`: the idle-sleep journal check uses `hasPending`. This keeps its early exit. A one-row `list` page would read the full journal. - `server/src/__tests__/resource-lifecycle-events.test.ts`: new database test for heads across acknowledged history, a creation recorded after transitions, acknowledged gaps, shared ids across resource types, per-plugin progress, another company, `afterId` pages, limits, `hasPending`, and the next head after an acknowledgment. The test also passes on the old query, so it locks the contract. - `scripts/benchmark-plugin-lifecycle-inbox.ts`: new benchmark. It loads the baseline service from git, runs both on the same fixture, alternates order, asserts equal rows, and prints plans. - `doc/DATABASE.md`: describes the read cost and the benchmark command. - No schema change, index or migration. ## Verification Thesis: the old read cost is (unacknowledged candidates) x (acknowledged older events per resource), because each candidate walks the acknowledged prefix of its resource. One pass that keeps the per-resource head removes that product and returns equal rows. Baseline plan at 220,080 events: 40,020 candidates each walked about 3,999 older rows, which gave 160,039,980 acknowledgment probes and 562,140,833 buffer hits. The treatment plan reads the journal once with a hash anti join and sorts the 40,020 unacknowledged rows (3,925 buffer hits). Local SQL timings (embedded PostgreSQL 18, Apple Silicon; event counts include a 20,000-event second company, synthetic data, warm cache, one warmup, order alternates): | Fixture (events / acknowledged) | Case | Before median | After median | Samples (after) | Speedup | | --- | --- | --- | --- | --- | --- | | 40,060 / 16,040 | page of 100, all types | 3,263 ms | 13.1 ms | 3 (12.0-14.1) | 250x | | 80,080 / 48,060 | page of 100, all types | 10,137 ms | 23.9 ms | 5 (22.7-32.6) | 424x | | 220,080 / 160,060 | page of 100, all types | 355,718 ms | 538 ms | 3 (72-785) | 662x | | 1,020,080 / 960,060 | page of 100, all types | not run (est. > 30 min) | 1,682 ms | 7 (1,203-2,384) | - | | 80,080 / 48,060 | page of 100, agent and project only | 1.5 ms | 1.6 ms | 5 | neutral | | 80,080 / 48,060 | idle-sleep check | 14.5 ms | 13.8 ms | 5 | neutral | | 1,020,080 / 960,060 | idle-sleep check | not run | 406 ms | 7 | - | - Result rows are equal (`assert.deepEqual` on all mapped rows, in order) for each case where both versions ran. - The agent runtime revision read in `plugin-agent-runtime-state.ts` and `agent-file-store.ts` (`select id ... order by id desc limit 1`) uses a backward index-only scan and reads 5 buffers at 1M events. It is not changed. Commands: ```sh pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-plugin-lifecycle-inbox.ts --baseline-ref=02bfe71a6b --agents=40 --per-agent=1500 --acked=1200 --samples=5 pnpm --filter @paperclipai/server exec tsx ../scripts/benchmark-plugin-lifecycle-inbox.ts --baseline-ref=02bfe71a6b --agents=40 --per-agent=25000 --acked=24000 --samples=7 --treatment-only cd server && npx vitest run src/__tests__/resource-lifecycle-events.test.ts src/__tests__/plugin-lifecycle-delivery.test.ts src/__tests__/agent-runtime-hooks.test.ts ``` - `resource-lifecycle-events.test.ts`: 28 passed. `plugin-lifecycle-delivery.test.ts`: 40 passed (includes idle-sleep "none" and "present"). `agent-runtime-hooks.test.ts`: 22 passed. - `tsc --noEmit -p server`: pass. ## Risks - The page read is still linear in the company journal size, because acknowledgments are per plugin and the journal has no retention yet. At 1M events a page takes about 1.7 s locally. Each acknowledgment wakes another full pass. A per-plugin cursor or retention can remove this later. - The planner can choose a different plan on the hosted database. The local plans use a hash anti join and one sort. The hosted improvement is not yet measured. - `acknowledge` still checks one event against older events of its resource. That check is linear in that resource's history per call, as before. - Low behavior risk: the new test passes on both the old and new queries. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, local PostgreSQL). Extended reasoning on. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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|
DottaandClaude Opus 5.5
|
17014cd7db |
perf(server): make run liveness backfill lookup issue-scoped (#20393)
## Thinking Path
> - Paperclip is the open source app people use to manage AI agents for
work
> - Each finished agent run gets a liveness classification. The task
page shows it, and recovery reads it.
> - Run finalization writes the classification. A backfill repairs runs
that do not have it, for example older runs or runs whose finalization
failed.
> - The task page runs read (`GET /issues/:id/runs`) starts this
backfill on each read, for each task.
> - The candidate lookup reads every unclassified finished run in the
company. For each row, it reads the run context and probes
`activity_log`. Rows of other tasks never match, so each read repeats
the same work.
> - On a hosted test instance, this lookup used approximately 1 s per
call, 2,636 calls, and 3,500 s in total.
> - This pull request makes the lookup read only the rows of the task,
and skips a task after a pass finds nothing left to repair.
> - The benefit is less database work per task page read. The
classification still gets written.
## Linked Issues or Issue Description
**What existing behavior does this improve?**
The run liveness backfill that the task runs read starts
(`scheduleRunLivenessBackfill` in `server/src/services/activity.ts`).
**Subsystem affected**
Server: activity service, task runs read, run liveness backfill.
**Current behavior**
Each task runs read runs this lookup:
```sql
select ... from heartbeat_runs
where company_id = $1 and liveness_state is null and status not in ('queued', 'running')
and (context_snapshot ->> 'issueId' = $2
or exists (select 1 from activity_log where company_id = $3 and entity_type = 'issue'
and entity_id = $4 and run_id = heartbeat_runs.id))
limit 20
```
PostgreSQL reads all unclassified finished runs of the company through
`heartbeat_runs_company_liveness_idx`. It then reads the context of each
row, which can be large, and probes `activity_log` for each row.
Unclassified runs of other tasks, and runs without a task, stay
unclassified, because no read of their own task repairs them. Thus the
cost grows with the company, not with the task. The lookup also runs
again on each read when the task has nothing to repair.
**Proposed behavior**
- The lookup reads only the runs of this task. One branch uses
`heartbeat_runs_company_ctx_issue_created_idx` (context `issueId`). The
other branch uses `activity_log_company_entity_created_idx` (issue
activity rows with a run id). The result keeps the same filter: same
company, liveness missing, status not `queued` or `running`, at most 20
rows.
- When a pass finds fewer than 20 rows, it has repaired all rows of the
task. The service then skips the task for 10 minutes. A full batch of 20
does not start the skip window, so the next read repairs the next batch.
**Reason and benefit**
The lookup is now proportional to the history of one task. Most reads
find nothing, and those reads now do no database work for 10 minutes.
**Breaking changes**
None. No migration, no API change, no new background work.
**Additional context**
The chat bootstrap read already skips the backfill
(`skipLivenessBackfill`). That option still works, and a test covers it.
## What Changed
- `server/src/services/run-liveness-backfill-query.ts`: new
`missingRunLivenessCandidatesQuery`. It replaces the `OR` and the
correlated `exists` with `id in (context branch union all activity
branch)`. Both branches are filtered by company and task.
- `server/src/services/activity.ts`: the backfill uses the new query and
returns the number of rows it found. `scheduleRunLivenessBackfill` keeps
a bounded in-memory map (at most 10,000 tasks, oldest entry is removed
first) of tasks with nothing left to repair. It skips these tasks for 10
minutes.
- `server/src/__tests__/activity-service.test.ts`: four new
real-database tests.
- The backfill repairs runs found by context and runs found only by
issue activity. It does not change a running run, an unclassified run of
another task, or a run of another company that names the same task id.
- After a pass leaves nothing to repair, more reads do not repair a new
unclassified run. After the skip window ends, the next read repairs it.
- A task with 25 unclassified runs (more than one batch) gets all of
them repaired over later reads.
- A read with `skipLivenessBackfill` does not repair. The next normal
read does.
- `scripts/benchmark-run-liveness-backfill.ts`: a local SQL benchmark
that compares the pre-fix query with the new query.
## Verification
Local SQL benchmark (embedded PostgreSQL 18.1, macOS, synthetic data):
```sh
cd server
pnpm exec tsx ../scripts/benchmark-run-liveness-backfill.ts --baseline-ref=02bfe71a6bbd7c5676cb7e72778b361c5bc72765
```
- Baseline: `02bfe71a6b` (pre-fix master). Treatment: `80fcfcf7f1`,
clean tree.
- Fixture assumptions (staging row counts were not available): one
company with 30,000 classified runs, 6,000 unclassified finished runs of
other tasks or of no task, each with an approximately 20 KiB hex
context, 400 other tasks, and 300,000 `activity_log` rows (half with a
run id). The target task has 40 classified runs, 200 activity rows, and
the missing rows of each case. Decoys: one `running` run of the task,
and one run in another company that names the task id. A small control
uses 500 classified and 50 unclassified runs.
- Each arm: 2 warm-up runs and 11 measured runs, in alternating order.
| Case | Candidates | Baseline median (min to max) | New median (min to
max) | Speedup | Shared buffers (baseline to new) |
| --- | --- | --- | --- | --- | --- |
| Task with nothing to repair | 0 | 37.2 ms (31.1 to 44.1) | 1.21 ms
(0.42 to 1.79) | 30.8x | 34,247 to 138 |
| Task with 3 missing | 3 | 37.8 ms (27.2 to 39.6) | 1.16 ms (0.77 to
2.05) | 32.6x | 34,265 to 148 |
| Task with 25 missing | 25 | 37.5 ms (34.6 to 69.8) | 1.63 ms (1.06 to
3.47) | 23.0x | 34,361 to 154 |
| Small control | 3 | 0.79 ms (0.70 to 1.06) | 0.70 ms (0.48 to 1.70) |
1.1x (neutral) | 314 to 18 |
The `EXPLAIN ANALYZE` execution time for the large cases goes from
approximately 35 ms to approximately 0.15 ms. These are local SQL
measurements. The hosted latency improvement is not yet measured.
The benchmark also checks result equality. For each case, it runs both
queries without a limit and compares every column of every row (as
sorted positional rows). It also checks that the limited batch of 20
comes from the baseline candidate set. All cases match.
Beyond the query, the skip window removes the lookup for most reads of a
task with nothing to repair.
Tests:
```sh
cd server
pnpm exec vitest run src/__tests__/activity-service.test.ts # 24 passed
pnpm exec vitest run src/__tests__/activity-routes.test.ts src/__tests__/task-cold-open.test.ts src/__tests__/liveness.test.ts
pnpm exec tsc --noEmit -p .
```
- The skip-window test fails on the pre-fix `activity.ts` (red), and
passes with this change (green).
- `pnpm verify` asks for broader coverage, because the change adds a
script. Required CI supplies that coverage.
## Risks
- A run that misses its classification after a pass finds nothing for
its task gets repaired up to 10 minutes later. Normal runs get their
classification at finalization, so only the repair path is late.
- The skip map is in memory for each server process. A restart clears
it. That only causes one more lookup for each task.
- The new query keeps the same rows, filter, and limit. The query has no
order, as before. Thus the 20 rows that a pass picks can differ when a
task has more than 20 candidates. Later reads repair the rest in both
versions.
- Low risk. No migration and no API change.
## Model Used
- Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, with tool use and code
execution in Claude Code.
## Checklist
- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
|
||
|
DottaandPaperclip
|
199670ba99 |
fix(accounting): prevent usage receipt stalls during streamed run updates (#20385)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native Runner commits usage receipts before it acknowledges retained events. > - Usage receipts and streamed run logs update the same run row. > - A repeatable-read snapshot can become stale before the receipt writer locks that row. > - Continuous log writes can exhaust all accounting retries and stall the retained event. > - This pull request uses the existing run lock with READ COMMITTED for standalone receipt writes. > - Other accounting operations keep their consistent snapshot. Stall diagnostics retain safe nested error codes. ## Linked Issues or Issue Description Related: #20235. **What happened?** A hosted native run stopped on a retained usage event. Its diagnostic reported `Error at source seq N`. The saved outbox and accounting records locate the failing delivery boundary. Traces show repeated accounting transactions while streamed events still updated the run row. The historical inner exception is unavailable. A controlled PostgreSQL reproduction proves a matching defect: a run-log append after company validation makes the receipt writer's repeatable-read snapshot stale. Repeated appends exhaust all four retries with SQLSTATE `40001`. This is a demonstrated failure mechanism; attribution of the historical incident remains an inference. **Expected behavior** Commit the receipt under its existing run-row lock despite concurrent run-log writes. Observe concurrent finalization and preserve late-receipt debt. Keep duplicate receipts idempotent and reject conflicting or cross-company receipts. **Steps to reproduce** Run `server/src/services/usage-receipts-read.test.ts`. The concurrency regression uses real PostgreSQL and the production run-log append function. It commits a log append after company validation and before the receipt locks the run. Before the repair, the receipt rejects with a wrapped `40001` after four attempts. After the repair, it commits once. The finalization variant verifies that a newly settled run receives late-receipt debt without replacing settled state. ## What Changed - Allow aggregate-lock-protected accounting writers to select READ COMMITTED. Keep repeatable read as the default. - Use READ COMMITTED only for standalone usage receipt writes. Keep the existing run lock, immutable receipt journal, replay checks and transactional budget-work publication. - Add PostgreSQL regressions for concurrent log appends, concurrent finalization, duplicate delivery and the unchanged default snapshot. - Read the outer event-commit error and at most three nested causes for an existing safe error code. Exclude exception messages and SQL. - Document receipt isolation and bounded stall diagnostics. ## Verification - Red: the production receipt writer exhausted four retries with PostgreSQL `40001` under controlled concurrent run-log appends. - Red: wrapped database and transport stall diagnostics returned `Error` instead of `40001` and `ECONNRESET`. - Green: Runner control-plane tests passed all 207 cases. All 68 server assertions passed across receipt reads, native usage delivery and cost accounting. Cost-accounting teardown exceeded its 30-second limit twice on this loaded host, after all 28 assertions passed. The workspace project retained its configured 30-second hook limit despite the CLI override. This is a local suite cleanup failure, not a passing suite; the same revision passed the complete server suites in CI. - Server layered TypeScript checking passed, including source and test layers. Runner TypeScript checking passed. Server checks cover `ccfe3bdeb1ab88537a03fd6af9044f66863939a5`; the unchanged Runner checks cover its parent. - Local environment: macOS arm64, Node 26.4.0, disposable embedded PostgreSQL. Native usage-delivery tests use the real Rust receiver. - CI at `ccfe3bdeb1ab88537a03fd6af9044f66863939a5`: [build](https://github.com/paperclipai/paperclip/actions/runs/42714760702/job/129493568428), [typecheck](https://github.com/paperclipai/paperclip/actions/runs/42714760702/job/129493568367), native Runner integration, browser shards and all nine serialized server groups passed. All 12 general server shards passed in the [full run](https://github.com/paperclipai/paperclip/actions/runs/42714760702). Final rollup: 59 successful checks/statuses, three intentionally skipped checks, no pending or failed checks. - [Greptile reviewed this revision at 5/5 with no actionable findings](https://github.com/paperclipai/paperclip/pull/20385#issuecomment-6753163397). - Hosted evidence came from the task, run, saved sandbox outbox, accounting receipts and traces. The run started fresh and did not cross a deployment. No original agent turn was replayed. - The hosted repair has not been deployed. The original task has not been resumed. A fixed-revision remote-provider user journey remains unverified. ## Risks - READ COMMITTED changes snapshot timing for standalone receipt writes. The run-row lock protects all mutable receipt/accounting reads and serializes competing receipts and finalization. Other accounting operations retain repeatable read. - Receipt identity, replay conflict checks, company scoping, budget publication, retry bounds and acknowledgement rules remain intact. - No persisted format, provider identity or database schema changes. Existing saved state needs no migration. - Diagnostics inspect at most four objects and retain only the existing identifier format, with an 80-character code limit. - The reproduced race matches the incident boundary and timing, but the original inner exception was not recorded. Rollout and live acceptance remain necessary before incident resolution. ## Model Used - OpenAI Codex, GPT-6 family, with code and shell tools. The exact model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
DottaandPaperclip
|
bf818280f2 |
perf(workspaces): reserve cohort members concurrently (#20401)
## Thinking Path > - Paperclip controls agent work and preserves its workspaces. > - The online importer moves up to eight shared-source leaves under one source fence. > - Each member must have a durable reservation before capture starts. > - Serial reservations repeat the same validation cost before any archive work. > - This pull request reserves members in parallel through their existing independent transactions. > - Every reservation finishes before an error can release the fence or start capture. ## Linked Issues or Issue Description Refs: #19873, #20387, #20394. **Current behavior** A measured six-member cohort spent about 110 seconds in serial reservations. Each reservation keeps its existing source, task, recovery and journal checks. **Proposed behavior** Start the bounded member reservations together. Join all outcomes, retain member order, and refuse capture if any member fails. Keep the exact partial-journal resume contract. **Reason and benefit** This removes serial metadata work before capture. Hosted speedup has not been measured for this change. ## What Changed - Replace only the cohort reservation caller loop with `Promise.allSettled`. - Preserve the existing per-member transaction, preassigned operation ID, source fingerprint and all source fences. - Extend the real PostgreSQL failure fixture to require overlapping reservations and complete peer closure before fence release. - Document the unchanged partial-journal and atomic publication contract. ## Verification - Canonical cached worktree preflight and plugin SDK prerequisites passed on Node 24.22.2. - The unchanged production baseline failed the new reservation overlap assertion: one reader entered instead of two. The canonical PostgreSQL wrapper cleaned up. The other 21 tests were intentionally not selected. - The first baseline command failed before PostgreSQL because root-level `tsx` resolution was absent. The corrected command uses the checkout's explicit `cli/node_modules/tsx/dist/loader.mjs`. - The four focused PostgreSQL controls passed before the final rebase: overlap/join failure, exact partial-journal resume, parallel capture with both cold restores, and atomic outer-commit rollback. Eighteen tests were intentionally not selected. Server TypeScript passed. - The final branch is based on merged #20394 at `302ada90dfda0e8fbcd8a514d506d310c9843bcb`. The two directly affected PostgreSQL reservation/resume controls passed again on final head `06d436e45705da3b616a2b91725960f6e0ea52c0` (2 passed, 20 intentionally not selected; 100.56 seconds). Server TypeScript passed again. The canonical wrapper completed cleanup. - The separate Ponytail review remains 4/5. Its nonblocking fan-out warning was resolved as the documented phase contract; no source change was required. Optional multi-error aggregation is outside this change. - Fresh Greptile review is 5/5 on `06d436e45705da3b616a2b91725960f6e0ea52c0`, with no actionable findings or unresolved threads: https://github.com/paperclipai/paperclip/pull/20401#issuecomment-6754025480. - Exact-head CI is complete: 56 success, 4 skipped and 1 neutral, with no failed or pending checks. Aggregate `ci / verify` passed: https://github.com/paperclipai/paperclip/actions/runs/42718439355. - Reproduce the final focused cases on Node 24: `node --import ./cli/node_modules/tsx/dist/loader.mjs packages/db/src/test-postgres-command.ts pnpm exec vitest run server/src/services/remote-workspace-cohort-migration.test.ts -t "joins concurrent reservation validation readers|resumes the exact membership after reservation stops halfway"`. Run `pnpm --filter @paperclipai/server exec tsc --noEmit` for TypeScript. ## Risks - API phase contract: `concurrency` limits capture workers. Preflight, reservation and post-finalizer validation fan out over the exact selected member set, with the canonical maximum of eight. The original DB pool bounds connections. `concurrency: 1` does not promise one metadata query or transaction at a time. - Up to eight reservations can use independent pool connections at once. Members that pass can leave durable journals when a peer fails. The existing exact-member resume path retains those journals; this change does not retry automatically. - Capture and publication remain blocked until every reservation settles. Publication stays serial in one transaction. Saved journal schemas, singleton behavior and recovery proof checks do not change. - This does not change concurrency inside the publication transaction. One PostgreSQL connection serializes that SQL, and changing its row-lock order has no measured benefit here. ## Model Used OpenAI GPT-6 (Codex), with tool use and code execution. The runtime does not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |
||
|
Nicky LeachandClaude Opus 5.5
|
d95fdd8d79 |
feat(observability): span the unnamed gaps in run preparation (#20396)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Before a task reaches the agent, the server prepares the run: it reads the task, the workspace and the configuration, and then hands the run to the native controller > - With an OTLP endpoint, each preparation step emits a `heartbeat.prepare.<phase>` or `native.controller.<phase>` span > - On a hosted test deployment, 0.3 to 0.5 s of each `task.prepare` sits between those spans, and about 0.5 s more sits between `execution.dispatch_admission` and `native.coordinator.claim` > - Nobody can say which step is slow in that time, so latency work in this area is guesswork > - This pull request adds spans around the existing awaited work in those gaps, with the existing timing helpers and naming conventions > - The benefit is that a trace of a slow preparation now names the step that used the time ## Linked Issues or Issue Description **What existing behavior does this improve?** The OpenTelemetry trace of task preparation. Today it has unnamed gaps between the named preparation spans. **Subsystem affected** Server: heartbeat run preparation and the native controller (`server/src/services/heartbeat.ts`, `server/src/services/native-runtime/native-session-executor.ts`). **Current behavior** On a hosted test deployment (8 runs per group), `task.prepare` takes 2.6 to 3.4 s. Between `heartbeat.prepare.runtime_state` and `heartbeat.prepare.run_identity`, about 0.25 s has no span. Between `execution.dispatch_admission` and `native.coordinator.claim`, about 0.5 s has no span, and in one pair of runs it was 1.4 s. Nobody can tell which step used that time. **Proposed behavior** Spans name the existing awaited reads and writes in those gaps. The change adds no reads and records no content. The operator endpoint gate and the no-operation behaviour stay. **Reason and benefit** Latency work in this area needs a measurement. With these spans, a trace of a slow preparation names the step that used the time, so a fix can be confirmed or rejected after deployment. **Breaking changes** None. The change adds span names to the closed list. It changes no API, schema or behaviour. **Additional context** The server uses postgres.js, which the auto-instrumentation does not cover, so database spans do not fill these gaps. ## What Changed - `server/src/services/execution-preparation-timing.ts`: add the new closed phase names. - `server/src/services/heartbeat.ts`: add `heartbeat.prepare.*` spans for `chat_retry_admission`, `workspace_selection`, `dependency_readiness`, `issue_checkout`, `instance_settings`, `workspace_context`, `project_context`, `plan_wake_routing`, `routine_environment`, `responsible_user` and `execution_start`. The re-reads of the issue after a checkout use the existing `issue_context` name. - `server/src/services/native-runtime/native-session-executor.ts`: add `native.controller.*` spans for `attachment_staging`, `warm_restore`, `span_persistence` (persistence of the preparation spans to the run log) and `state_migration` before the coordinator claim. - `doc/observability.md`: list the new spans. - `server/src/__tests__/heartbeat-preparation-gap-spans.test.ts`: run a real heartbeat through native preparation with an in-memory span exporter. Check that each new span is emitted and that the new preparation spans are children of `task.execution_attempt`. ## Verification - `pnpm --filter @paperclipai/server typecheck` - `npx vitest run src/__tests__/heartbeat-preparation-gap-spans.test.ts` (fails without the source change, passes with it) - `npx vitest run src/services/heartbeat/preparation-timing-context.test.ts src/services/execution-preparation-timing.test.ts src/services/native-runtime/native-session-executor.test.ts src/__tests__/heartbeat-context-compaction-execution.test.ts` ## Risks - Low risk. The change only wraps existing awaited calls. Values and errors pass through the timing helper unchanged, and a checkout conflict still reaches the same `catch`. - Phases of 50 ms or more inside `heartbeat.prepare.*` are also written to the run log, as for the existing phases. This adds a few run-log rows on slow runs. - Without an OTLP endpoint, the helpers keep their current no-operation behaviour. ## Model Used - Claude Opus 5.5 (`claude-opus-5-5`), Anthropic, used through Claude Code with tool use (shell, file edits, test runs) and extended thinking. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
||
|
DottaandClaude Opus 5.5
|
09241442ea |
fix(server): let a native reviewer approve its review stage (#20373)
## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Execution policies can require an independent review stage before a task is done > - A native (Runner) agent that is the active reviewer had no way to record its decision > - `PATCH status: "done"` is refused for a native run that owns the task (#18411), and `paperclip_finish` accepts the report but leaves the stage pending > - The reviewer then searches the API until a deadline, and the task stays in review with nobody able to decide it > - This pull request records the final-stage approval on `PATCH` without releasing the run's lock, and lets the run's own finish report set the final status > - The benefit is that an agent reviewer can actually approve its review stage, in one short turn ## Linked Issues or Issue Description Refs #18411 (added the native status guard). Related: #20264 (explicit stage-decision operation, still open; this change is narrower and compatible with it). **What happened?** A native reviewer agent was woken as the active `review` participant. It read the deliverable and wrote its review in about 100 seconds. It then called `paperclip_finish` with `done`. The tool answered "Completion report accepted; the task's configured review stage is still pending". It then tried `PATCH /api/issues/{id}` with `status: "done"` and a comment. The route refused it with `native_run_status_reported_by_finish`. The agent searched the API for 2 more minutes and found no other path. The stage stayed pending. When the run ends with `done`, the status arbiter sees the pending stage and keeps the task in review (`governed_gate_pending`), so the stage can never resolve. **Expected behavior** The active review/approval participant can approve its stage from a native run. The task reaches `done` after the approval. The implementer still cannot approve. A run that is not the active participant still cannot change the task status. **Steps to reproduce** 1. Create a task with an execution policy that has one `review` stage with a native agent participant. 2. Move the task to `in_review` so the stage is pending and the reviewer agent wakes. 3. In the reviewer run, call `PATCH /api/issues/{id}` with `{ "status": "done", "comment": "Approved: ..." }`. 4. Observe `409 native_run_status_reported_by_finish`. Call `paperclip_finish` with `done` and observe that the stage stays pending. ## What Changed - `PATCH /api/issues/:id`: when the requester is the native run that holds the task lock and is the active participant, a `status: "done"` request on the final stage now records the approval decision (`executionState` completed, decision row, activity). The route removes `status` from the write, so the task stays `in_review` and the run keeps its execution lock. The run's `paperclip_finish` report then sets `done` through the normal status arbiter. - An intermediate-stage approval (which would hand the task to the next participant) and every other status change from such a run keep the existing `native_run_status_reported_by_finish` refusal. - `paperclip_finish` from the active participant (`done` or `needs_review`) while its stage is still pending is now rejected with the exact decision path, instead of being accepted with "stage still pending". - The native finalizer now treats the final-stage approval that the run itself recorded (read from the `issue_execution_decisions` row, bound to this run and agent) as the completion authority for its clean `done` report. Before this, a reviewer that cited free-text evidence had its report graded as incomplete, and the task was reopened as `in_progress` with a new wake for the reviewer. Failed verification, blocking remaining work, attention requests, other dispositions, and a still-pending stage keep the old outcome. - The reviewer/approver wake text names the decision path (`PATCH` with `status` and a required decision comment) and says a completion report does not record the decision. A Runner reviewer that needs changes is told to report them with `paperclip_block`, because a changes request from the run that owns the task is a reassignment that stops that run. - The locked review-policy recheck treats the deferred approval as a verdict, so a policy changed to `human_only` before the locked write still refuses it. ## Verification - `pnpm exec vitest run server/src/__tests__/issue-agent-mutation-ownership-routes.test.ts server/src/__tests__/issue-execution-policy-routes.test.ts server/src/__tests__/issue-comment-reopen-routes.test.ts server/src/__tests__/issue-execution-policy.test.ts packages/adapter-utils/src/server-utils.test.ts`: 5 files, 595 tests pass. - `pnpm exec vitest run server/src/services/native-runtime/native-completion-feedback.test.ts`: 29 tests pass (embedded PostgreSQL), including the decision-row binding for `executionStageApprovedByRun`. - `pnpm exec vitest run server/src/services/native-runtime/status-arbiter.test.ts server/src/services/native-runtime/native-run-finalizer-telemetry.test.ts server/src/services/native-runtime/native-stale-owner-completion.test.ts`: 72 tests pass. - New route tests fail without the route change (409 instead of 200/422) and pass with it. The new feedback test fails without the feedback change ("Completion report accepted" instead of a rejection). - `npx tsc --noEmit -p server` and `-p packages/adapter-utils`: pass. - A route test changes the review policy to `human_only` between the first check and the locked write; the deferred approval is refused (403). - Live full-stack chat eval `task-coordination.independent-review` (Runner, OpenCode) with this change: passed in GitHub Actions run 42705964209 (eval branch with the first two commits cherry-picked). The reviewer run recorded its approval 24 s after its review brief was released, reported `done` 14 s later, and the finalizer set the task to `done` with reason `execution_stage_approved`; total reviewer run 73 s. The earlier run 42702224713 exposed the finalizer evidence issue that the second commit fixes. ## Risks - Low to medium. The change is limited to one request shape: a native run, holding the lock, that is the active participant of a pending final stage, sending `status: "done"`. All other requests keep the old guard. - Between the approval and the finish report, the task shows `in_review` with a completed `executionState`. If the run fails before it reports, the existing native recovery owns the task, as for any other run. - Previous-release story: no persisted shape changes. A reviewer run that started before the deploy could not have recorded a deferred approval (the old route refused it), so the new finalizer input is false for it and the old outcome applies. - Intermediate-stage approvals and changes requests from native runs are still refused by the route. A Runner reviewer reports required changes with `paperclip_block`, which keeps the stage pending for a person. A self-service changes request needs the deferred handoff semantics in #20264. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), tool use and code execution in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com> |
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DottaandPaperclip
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302ada90df |
fix(workspace): refresh source admission proofs on import resume (#20394)
## Thinking Path > - Paperclip preserves agent work and recovery obligations across server replacement. > - Online workspace imports keep durable operation and snapshot journals for interrupted work. > - A recovery admission fingerprint hashes complete run, finalizer, and lease rows. > - Accounting updates can change that hash while every saved recovery reference remains identical. > - Resume currently treats that expired admission observation as immutable source identity and refuses the existing journal. > - This pull request refreshes only that observation after exact identity checks and finalization fencing, preserving the original archive and journal. ## Linked Issues or Issue Description **What happened?** An interrupted import whose saved recovery sources have no changing online recovery hold can fail on its next attempt with `remote_workspace_migration_source_changed`. A change to a run's accounting fields changes `onlineProof.fingerprint`, even when all eight saved recovery records have the same typed references and ownership fields. **Expected behavior** For source-only admission drift, resume must compare every saved recovery source field exactly, except the supported ephemeral admission fingerprint. It must inspect the current source again, acquire the existing finalization fence, and retain strict full-proof checks through publication. It must keep the original operation, snapshot, archive, nested-child scope, and cohort identity. **Steps to reproduce** 1. Save a journal for an online import with eight recovery sources and no active online recovery holds. Interrupt after real authenticated restore of its uploaded snapshot. 2. Change only accounting fields on source 6's saved run. 3. Resume the same journal. The unchanged importer refuses it. The fixed importer preserves the original identities and commits after fresh guarded inspection. **Paperclip version or commit** Reproduced on master `9c634e42e449e91f3935cf59036981852f94a65e`. **Deployment mode** Online administrative imports with PostgreSQL. Related preservation work: https://github.com/paperclipai/paperclip/pull/20311 and https://github.com/paperclipai/paperclip/pull/20370. The independent readonly parallelism work in https://github.com/paperclipai/paperclip/pull/20387 changes different loops. ## What Changed - Compare the complete `legacyRecoverySources` records at resume, neutralizing only a valid fingerprint under the supported proof schema. Preserve every other field and refuse unsupported proof versions by name. - Reuse the current canonical full proofs. Persist them with an operation metadata compare-and-swap only after the existing finalization lock and strict reinspection succeed. - Keep strict full-proof checks within each attempt and before publication. Preserve all journal, snapshot, archive, nested-child, and cohort identities. - Add focused real PostgreSQL regressions in the existing online-source fixture, including exactly eight saved sources and repeat-apply idempotence. ## Verification - Genuine baseline RED: singleton and cohort resume both fail after accounting-only changes on the unchanged product. - `pnpm exec vitest run server/src/services/remote-workspace-online-source.test.ts -t 'eight saved recovery|changed saved recovery|recovery accounting changes|saved recovery proof'`: 8 passed. - Controls refuse changed valid references, a matched run/lease allocation change, competing ownership, and unsupported proof versions. They also prove that bookkeeping changes within an admitted attempt still refuse and a busy finalization fence prevents proof refresh. - Successful resumes preserve the operation/snapshot IDs, cipher SHA, manifest digest, byte size, nested scope, and cohort. Repeat apply creates no duplicate operation or snapshot. - Server layered typecheck, module boundaries, and whitespace checks passed. All applicable exact-head CI passed (including typecheck, build, all test shards and aggregate verify); hosted acceptance remains owned by the deployment workstream. Greptile re-reviewed the narrowed scope at 5/5. Ponytail scored 4/5, recommending a regression for the unchanged hold-bearing refusal; the maintainer explicitly kept that separate behavior outside this source-only fix. ## Risks This changes only source-proof resume admission. `onlineRecoveryHolds` and their action/intent fingerprints remain compared exactly, as on the baseline: a hold-bearing journal whose hold proof changes still refuses. Supporting that separate case would require preserving and validating the hold owner’s complete intent facts; this PR deliberately retains that safety check. Bookkeeping that changes during an active attempt still causes the existing strict publication checks to refuse that attempt. Older unsupported proof shapes remain refused. The metadata update uses the existing company/workspace/operation identity, running/unfinished status, and metadata compare-and-swap. No schema, provider, or storage format changes are included. ## Model Used OpenAI Codex, based on GPT-6, with tool use and code execution. The exact deployment identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing> |