Commit Graph
9 Commits
Author SHA1 Message Date
TonioandClaude Opus 5.5 8ea240218d feat(ui): bring the Refine-v2 layout to the agent page (#18378)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The agent page is where an operator reads and changes one agent.
> - The page grew one tab at a time. Ten tabs sit in one flat list, the
header holds many buttons, and the audit links leave the agent.
> - A design pass, called Refine-v2, made a calmer layout for this page.
It ran in a prototype on fixture data only.
> - This pull request moves the Refine-v2 layout and behavior into the
live agent page. Where the prototype and the live page differ, the live
behavior stays. For example, the floating save bar stays on screen.
> - The benefit is a shorter navigation, edits in place, and audit data
that stays inside the agent.

## Linked Issues or Issue Description

Refs #13716
Refs #9166

Both pull requests mount plugin tabs or slots on the agent page. They
touch the same files, so one of the three needs a rebase after the
others merge.

**Subsystem affected**

The agent detail page in `ui/` (`ui/src/pages/AgentDetail.tsx`, its
sidebar, header actions, and the shared agent config form).

**Problem or motivation**

The agent page is hard to scan. The navigation shows ten items in one
list. The header shows Run now, Pause, Clear error, and Assign task as
separate buttons. The name, title, and manager are form fields deep in
the Harness tab. Activity, Runs, Costs, and Budgets open company-wide
pages, so the operator loses the agent context. Each tab uses a
different card and table style.

**Proposed solution**

Use one layout system for every agent tab. Group the navigation into
Agent and Audit. Edit the name and title in the header. Move the work
actions into the actions menu. Show audit views inside the agent. Keep
the persistent save bar and add a status dot to it.

**Alternatives considered**

We considered a flag that lets operators opt in to the new layout. We
did not use a flag, because two layouts on one page double the test
surface. We also considered moving the save button to the end of the
scrolling content, as the prototype did. We kept the floating save bar,
because it is always visible.

**Roadmap alignment**

`ROADMAP.md` has no item for the agent page. This change is a UI
refinement of an existing page. It adds one optional field to an
existing API request and no database schema change.

## What Changed

- **Navigation.** The agent sidebar shows two groups. Agent has
Overview, Identity, Harness / Runtime, Secrets & variables, Permissions
/ Trust, and Advanced. Audit has Activity, Runs, Costs, and Budgets.
Skills, Tools, Channels, and API Keys leave the navigation. Their URLs
still open. The Instructions tab is now Identity, at `/identity`. The
old `/instructions` URL redirects.
- **Header.** The agent character shows at a larger size. The name and
title edit in place. Enter or blur saves. Escape cancels. An error
restores the old value. A rename updates the URL. While a tab has
unsaved changes, the header refuses the edit and asks the operator to
save or discard first. The third line shows the title and a link to the
manager. A crown button to the right of the name replaces the "Set as my
primary" link and the separate primary indicator. It is outlined and
dimmed until the agent is your primary, then fills with a short pop.
Replacing an existing primary asks for confirmation first, and the pop
plays after the dialog closes. Reduced motion skips the pop. Run now,
Pause or Resume, Clear error, and Agent history move into the actions
menu. Assign task is the primary button. For an agent that still needs
setup, Finish setup is the primary button and Assign task moves into the
menu.
- **Agent history.** A new dialog in the actions menu replaces the
Revisions entry. Each row shows a plain-language summary, the person or
agent who made the change, the date, and Restore. Restore asks for
confirmation. A failed restore shows its reason inside the confirmation.
- **Overview.** Four metric tiles show activity this week, runs this
week, costs this month, and budget used. Each tile links to its audit
view. When the list behind a count is capped, the tile shows a lower
bound, for example 200+. The activity tile follows live updates.
Profile, Skills, and Recent tasks panels follow. The Profile panel lists
direct reports under their label in at most two rows, then a "+N more"
button that expands the list. The Latest run card is removed.
- **Identity.** The file preview shows the raw text. A pencil button
switches to a plain text editor. Copy and Delete are icon buttons. A
chip next to the file name says "Managed by you" or "Managed
externally". Per-file history and unsaved edits stay.
- **External instructions.** "Advanced settings" opens Root path and
Entry file fields and a Load profile button. Load profile asks the
server to switch only if the root directory and the entry file already
exist. If either is missing, the server refuses and the panel shows the
reason. The entry file can have any name inside the root.
- **Instructions bundle API.** `PATCH /agents/:id/instructions-bundle`
accepts an optional `requireExistingEntry` flag (`packages/shared`
validator, `server` service, `ui` client). With the flag, the server
checks the root directory and entry file before it creates or copies
anything. Without the flag, the behavior does not change.
- **Harness / Runtime.** The config form gets a `panels` layout: Harness
and Execution side by side, then the runtime test, then environment
variables. The identity and run-policy sections are hidden from this
tab.
- **Secrets & variables and Advanced.** These tabs use the same filled
panels and table headers.
- **Permissions / Trust.** The trust presets show as selectable cards.
An Allowed connectors panel shows up to three connector logos and links
to Apps, filtered to installed connectors. Capabilities sit in their own
panel. Changes on this tab save at once, with no save bar.
- **Audit inside the agent.** Activity, Runs, Costs, and Budgets render
inside the agent page. Runs is locked to the current agent. A failed
budget incident action shows its reason under the incident.
- **Save bar.** The floating save bar stays. It shows an amber dot for
unsaved changes and a green dot with "Changes saved" after a save.
Discard stays.
- **Leave guard.** If the form has unsaved changes and the operator
clicks a link, a dialog asks to keep editing or discard the changes.
Browser back and the header actions keep the native confirm.
- **Apps.** `/apps?source=installed` opens the Apps page on the
Installed filter.
- **Tokens.** New `--agent-detail-*` tokens in `ui/src/index.css` hold
every spacing and fill value. Each fill is a mix of foreground into
background, so one value works in light and dark themes.
- **Tests and maps.** Tests cover the navigation model, sidebar, header
menu, Overview layout, Identity editor, and helpers. The
agent-configuration recipe in `maps/feature-map/agents.md` describes the
new page.

## Verification

- `cd ui && npx vitest run`: 849 test files and 10,081 tests pass.
- `cd server && npx vitest run
src/__tests__/agent-instructions-routes.test.ts
src/__tests__/agent-instructions-service.test.ts`: 40 tests pass.
- `npx playwright test --config tests/e2e/playwright.config.ts
tests/e2e/onboarding.spec.ts
tests/e2e/chat-adapters-ui-providers.spec.ts`: 26 tests pass.
- `cd ui && pnpm typecheck` passes. This includes the Storybook catalog
check. The `server` and `packages/shared` typechecks pass.
- `cd ui && pnpm build` passes.
- `pnpm run check:token-gates` reports all gates clean.
- `node scripts/check-maps.mjs` and `node scripts/storybook-catalog.mjs
--check` pass.
- Manual check on a local instance, in light and dark themes:
1. Open an agent. Confirm the sidebar shows the Agent and Audit groups.
2. Click the agent name in the header. Type a new name and press Enter.
Confirm the URL changes. Rename it back.
3. Open the actions menu. Open Agent history. Confirm the rows and the
Restore confirmation.
4. Open Identity. Click the pencil. Change a line. Confirm the save bar
shows the amber dot. Click a sidebar link. Confirm the discard dialog.
Click Keep editing, then save. Confirm the green dot.
5. Open Harness / Runtime, Secrets & variables, and Permissions / Trust.
Confirm the panels and the trust cards.
6. Open Runs under Audit. Confirm the list shows only this agent and the
page stays inside the agent.

## Risks

- This changes a high-traffic page for every operator at once. There is
no flag to switch back.
- Run policy and Reports to are no longer editable on the agent page.
The header shows the manager as a link only.
- Skills, Tools, Channels, and API Keys are reachable by URL only.
Operators who use them from the sidebar must use the URL.
- The pull request conflicts with #13716 and #9166 in `AgentDetail.tsx`
and the agent sidebar.
- Storybook stories for the agent page and `DESIGN.md` are not updated
in this pull request.
- The new `requireExistingEntry` flag is opt-in. Existing API callers
keep the old behavior, which creates a missing external directory and
entry file.
- I ran two e2e spec files locally, not the full `pnpm test:e2e` or
`pnpm test:release-smoke`. CI runs the full e2e suite. I did not run the
repo-wide `pnpm -r typecheck`, because the local toolchain has no Rust.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 5.5 (`claude-opus-5-5`), in Claude Code, with
reasoning and tool use (shell, file edits, and a browser for visual
checks). A person directed every design decision.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
2026-11-01 22:27:09 -08:00
DottaandPaperclip 006d5691a6 feat(server): support volume-free web server handoff (#18518)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Its web server also owns controller admission and user commands.
> - A rolling deployment starts a replacement before the old server
exits.
> - Shared database state alone does not preserve local agent files,
browser chunks, or in-process commands.
> - This pull request adds an opt-in ephemeral server contract and a
local overlap test.
> - The benefit is a web server that can relinquish traffic and local
files without losing acknowledged work.

## Linked Issues or Issue Description

Refs #18403, #18327, #18335, #18341.

**Current behavior**

The control-plane web server still has local agent-file authority and
local command targets. A new container can miss saved bytes or send a
command to the wrong process. An existing browser tab also needs chunks
from its original build.

**Proposed behavior**

Eligible servers share only PostgreSQL, object storage and stable
secrets. A replacement waits for readiness. The old server drains
admitted requests, keeps owner commands available through handoff, and
releases controller leases. Explicit maintenance adopts existing files
before the volume is removed.

**Reason and benefit**

This is the application prerequisite for rolling app-only deployments.
Schema migrations and permanent multi-replica operation are outside this
change.

## What Changed

- Store agent-file manifests in PostgreSQL and immutable bytes in S3.
Treat local roots as disposable projections. Preserve existing
permission checks and edit conflicts.
- Add an explicit migration, eligibility and object-retention command to
the production runtime bundle.
- Add `/api/ready`, admitted-request drain, browser restart signaling
and retained immutable UI chunks.
- Carry transaction-aware work hints across controllers during handoff
and active execution. Keep listeners closed when idle.
- Deliver durable Stop and runtime responses to the execution owner.
Recheck request lifecycle and access before response dispatch.
- Reject local-only configuration in ephemeral mode. Keep the feature
disabled for existing installations by default.
- Add an isolated PostgreSQL/S3/proxy/browser deployment harness with
independent server homes and retained failure evidence.

## Verification

- All CI checks pass on `ce17b95019d3cf1cabd357d19b6d37f96782cc5c`:
workspace typecheck, build, Runner checks, server/general tests and
browser shards. Greptile reviewed the runtime changes at 5/5 with all
findings resolved; the final commit updates maps and the plan.
- Local targeted checks passed: coordinator 27; Stop/recovery 33;
PostgreSQL command delivery 6; route/workspace regressions 8; bootstrap
Stop 1; restart recovery 75. PostgreSQL command tests simulate the
provider edge.
- Local browser proof passed 91 reads and 19 saves; reconnect took
1,013ms. The tab opened Audit from S3 after deletion of A's whole
home/build. This uses compiled workspace code and local-trusted auth,
not released containers or live agents.
- Local workspace typecheck/build passed; current server and runtime
bundle passed. The earlier broad local suite was stopped after three
hours and is not a passing receipt. Its retained failures and isolated
reruns are documented in the plan.
- Stacked #18526 adds stricter graceful-exit proof, an unready
replacement control, live Runner qualification and a Stop handoff
correction. Hosted enablement remains gated on those results and Cloud
#1096. No hosted stack has been enabled.

## Risks

- Apply migration 0422 before enabling the feature. Existing data must
pass each owner's migration and eligibility checks. Do not discard a
volume based on a single migration page.
- Durable manifests remain authoritative after the opt-in is disabled.
Rolling back to a binary that ignores them is unsupported.
- Cold directory restoration and complete shutdown timing still need
qualification before enabling a hosted stack.
- Retained UI assets must cover the supported browser and rollback
window. Cleanup is explicit; no new idle maintenance polling is
introduced.
- This change does not claim production zero downtime or authorize a
fleet-wide enablement.

## Model Used

OpenAI Codex, GPT-6 family. The exact serving model ID and
context-window limit are not exposed in this session. Used reasoning,
code editing, shell execution and browser automation.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-11-01 01:58:54 -06:00
DottaandFry 3ca196b0a6 feat(agents): persist agent files across tasks without revision history (#14420)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - An agent needs personal files across tasks and sessions.
> - AGENTS.md is one file in that directory. Supporting files need the
same persistence.
> - The Instructions Editor and agent runs must share one current
directory.
> - Concurrent runs should apply only the files they change. The last
sync of the same file wins.
> - This pull request uses existing file transport and removes temporary
copies after sync.
> - Old instruction-only sessions keep their restore contract. New saves
do not create revision history.

## Linked Issues or Issue Description

Refs #14325. This replaces its revision-oriented design with persistent
agent files. Keep #14325 unmerged.

Transport prerequisite #14416 merged first at
`d172197117a14b80a1eb2d2835a0e7cce2679656`. This PR now targets master
and remains below 100 changed files.

Related work: #4513 and #8798 cover instruction tooling. This change
handles run synchronization, cross-task personal files, browser editing,
and old-session restoration.

## What Changed

- Keep one current directory per company and agent. Point AGENT_HOME at
a temporary working copy for each active run. Keep task files and
provider HOME separate.
- Restore text, binary files, and nested folders through workspace
transport. Exclude remote agent files from task Git snapshots with a
self-ignoring file inside the reserved runtime directory; never write
through repository-controlled Git metadata.
- Collect after the provider and child processes have stopped. Keep
resumable conversation state.
- Apply changed and deleted files under the agent lock. The last sync
wins for the same file. Unrelated concurrent changes survive.
- Remove temporary copies after successful sync, rejected sync, and
staging failure. Register ownership before copying so restart recovery
can remove interrupted preparation. Retry transient synchronization up
to three times. Preserve the original remote lease reference until
deletion succeeds; restart cleanup never acquires a replacement sandbox.
Do not create captured directories or a conflict-review queue for new
runs.
- Keep browser editing, stale-draft protection, and streaming binary
downloads. Keep the instruction entry and text editor limited to 1 MiB.
- Keep historical agent-folder sync failures on their affected runs
instead of repeating them above current saved instructions. Preserve
legacy candidate review and current browser-save errors. Avoid duplicate
quota warnings while retaining separate sync failures when they describe
a different problem.
- Require target-scoped caller grants for peer instruction access, while
preserving self edits, responsible-user checks, and protected-change
consent.
- Treat full storage as a nonblocking run warning, never an agent pause
or run-admission failure. Restore already-over-quota saved folders so
ordinary agent cleanup can recover; warn on each run until cleanup. The
run detail view shows the warning.
- Allow 256 MiB per file, 2 GiB per directory, and 100,000 entries. Hash
large files as streams. Check editor-save quotas with metadata instead
of hashing unrelated files.
- Preserve old native inputs, instruction-only copies, paths, digests,
and pending legacy candidates. Adopt old revision heads once. New writes
do not append history rows.
- Add idempotent migration 0287 and verify upgrades from the preview
tables and receipts.
- Add nine interactive stories under **Agents / Persistent files**,
including automatic incoming edits, stale browser drafts, and
storage-limit diagnostics.

## Verification

- Merge candidate: `4f5390107ec6ffd80a76d1d2e85530e66f21d079`, after
merging current master and the landed transport prerequisite.
Integration required no manual conflict resolution; the feature remains
99 changed files. Full workspace typecheck, production build, token
gates, and 715 focused tests passed on this merge candidate. Fresh
Greptile review is 5/5 with no unresolved findings. All 55 checks
passed, with four conditional skips, including the build, typecheck,
browser E2E, and canary dry run. A single retry recovered four jobs
interrupted by runner shutdowns; no source changes were required.
- Historical-warning UI fix: all 6,834 UI tests across 640 files passed,
including regression coverage for three old failures, legacy preserved
edits, and warnings scoped to the affected run. Full workspace
typecheck, production build, Storybook build, and token gates passed.
Browser-verified Storybook playtests passed for Historical Failures
After Successful Save, Storage Limit, and Full Storage Run Warning.
- Review follow-ups at `4e20c9fb2`: all 18 focused tests passed,
including external Git directories, linked worktrees, symlinks,
hardlinks, and distinct I/O failures alongside storage warnings. Server
and UI typechecks, token gates, and the production build passed.
- Storage warning regressions at `0724f3012`: all 33 directory tests and
all five heartbeat-list tests passed, with no skips in their successful
runs. They cover repeated runs while full, an already-over-quota saved
folder, cleanup, warnings retained after unrelated save failures, and
bounded warnings in large result JSON. Server typecheck passed after the
final warning fixes.
- Full workspace typecheck, production build, and token gates passed
during this follow-up. Product E2E harness: 631 tests passed across 52
files; harness typecheck passed. Earlier native session/context and
directory/legacy collection suites passed 537 tests; Runner
unit/transport suites passed 329 tests.
- **Real E2E at `0724f3012` (before this follow-up):** legacy local
Codex and native Daytona Codex each passed six tasks, one server
restart, seven independent assertions, and cleanup verification. Both
prove browser-to-agent edits, agent-to-browser edits, nested/binary
restoration, per-file last-sync-wins, a successful run after an
oversized save rejection, and cleanup clearing the warning.
- Native local Codex also passed the six-task quota flow before the
final warning-retention fixes. That pass began at `918d1ed02` while the
bounded-result warning fix was being edited, so it is not claimed as
exact-final-head evidence. Its final-head rerun failed during embedded
PostgreSQL bootstrap before any provider run: the macOS host had 87,365
of 87,381 SysV semaphores occupied. No unrelated services or kernel
limits were changed.
- The final-source report intentionally records **2/3 cells passed**,
preserving the blocked native-local attempt:
`tests/runner-e2e/results/agent-files-quota-final-20260928-report/`.
Earlier failed attempts and provenance notes remain under
`tests/runner-e2e/results/agent-files-quota-final-20260928-input/` and
the original campaign directories.
- Daytona used immutable image
`ghcr.io/paperclipai/paperclip-daytona-runner@sha256:5643f0d801417cae3581833a1a3bc6715b325e028602738d2652c44cac5dc6bf`
and its exact Linux runner binary. Controller source is `0724f3012`;
image source is recorded separately.
- Legacy-session compatibility and all three ACP Stop/resume browser
regressions passed on the prior validated feature head
`169fab46d5af21caa2269b4c1b29b69c933a6951`. They assert the same
provider session is retained and interrupted writes are not replayed.
Migration upgrade tests also passed earlier.
- Nine interactive stories are under **Agents / Persistent files**,
including **Full Storage Run Warning**. Its playtest and visual browser
inspection passed; the warning states that runs continue and the editor
remains available.
- Prior-head checks on `4e20c9fb2`: 55 passed, two conditional jobs
skipped, no failures or pending checks. All eight browser E2E shards and
their aggregate passed. Fresh Greptile review is 5/5 with no findings;
all review threads are resolved, the security scan passed, and GitHub
reports no merge conflicts.
- The broad local follow-up test run was interrupted after host
semaphore exhaustion affected isolated PostgreSQL instances. It also
encountered the existing macOS long-path fixture failure and two timeout
failures. This is not a claim that the full local suite passed. Logs are
retained; focused storage/warning tests passed.

## Risks

- A later sync can overwrite an earlier edit to the same file, including
a saved browser edit. There is no text merge or retained version. This
is the intended last-sync-wins policy.
- A save that exceeds a storage limit is rejected and its temporary copy
is discarded. The run itself continues normally, and later runs restore
the last saved files with a warning until cleanup. Transient sync
failures get bounded retries. An I/O failure partway through a sync can
leave some files updated; a failed receipt does not claim whole-folder
success.
- Larger folders increase copy time, network traffic, and temporary disk
usage. Active runs still need working copies. Terminal runs do not
accumulate archives. Operators must provision disk for agents and
configured concurrency; these limits are not company-wide quotas.
- A restored old native session remains instruction-only until a fresh
session starts. Its original conflict fence and existing pending
candidates remain compatible.
- Provider processes close at the collection boundary. Conversation
resume remains available, but warm process reuse is lost.
- Backups must include the instance filesystem and database. External
bundles keep their existing behavior until explicitly moved to managed
storage.

## Model Used

OpenAI Codex, GPT-6 family. The session does not expose a more specific
model ID or context-window size. Reasoning, code execution, and browser
tools assisted this change. Real provider E2E uses `gpt-5.6-sol`.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Fry (Paperclip) <noreply@paperclip.ing>
2026-09-29 08:25:56 -05:00
DottaandDev Agent 25cf079ec5 feat(runner): add Codex-native application integration (#12591)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The runner package is useful only when the application can start,
observe, and recover a native Codex run safely.
> - Existing direct adapters must keep their current execution and
finalization paths.
> - The application boundary therefore needs additive persistence,
authorization, coordination, and recovery behind an explicit
experimental adapter.
> - This pull request adds that Codex-only boundary without activating
generalized providers, remote environments, or the later task/SDK
surfaces.

## Linked Issues or Issue Description

**Subsystem affected**

Shared contracts, database persistence, adapter utilities, server
native-runtime services, and the experimental Paperclip Runner adapter.

**Problem or motivation**

The already-landed runner package has a qualified Codex path, but the
application needs durable native-run state, guarded runtime selection,
authenticated coordination, tool security, finalization, and recovery
before the experimental adapter can be exercised safely.

**Proposed solution**

Add a Codex-only `paperclip_runner` application path behind the existing
default-off native-runner setting. Bind native state and coordination to
company/run identity, preserve persisted-run recovery, and leave every
direct adapter on its existing legacy execution path.

**Alternatives considered**

The earlier stack boundary introduced a generalized executor and
remote-environment lifecycle here. That made this PR depend on
implementations in higher PRs and changed reusable sandbox behavior
globally. Those pieces are now deferred together to #12592.

**Roadmap alignment**

ROADMAP.md does not list a conflicting native-runner integration
project. This change adds the application boundary for the existing
Runner architecture.

## What Changed

- Added native run/result/finalization/provider-trace persistence,
shared validators, and idempotent migration/replay coverage.
- Added guarded Codex-only runtime selection, authenticated PRP
coordination, recovery, finalization, and interaction services.
- Added run/company-bound tool-gateway authorization, credential
redaction, SSRF protections, and replay-safe behavior.
- Added the explicit `paperclip_runner` adapter behind the default-off
rollout setting.
- Preserved legacy answered-question wake projection and direct-adapter
execution/finalization paths.
- Hardened cancellation so only owned in-memory child processes are
signaled; persisted recycled PIDs/process groups are never trusted.
- Retained the narrow Claude ACPX isolated-context security follow-up
discovered after #12590.
- Deferred the generalized executor, provider ingress, remote lifecycle,
SDK/lab/eval work, release-process changes, and lockfile.

## Verification

- Changed-file delta against `master`: 133 files.
- GitHub Actions is the authoritative verification environment for this
PR.
- Full CI, security, and Greptile review will run on this lowest
unmerged stack PR.
- Local tests/build/typecheck were not run because this checkout is
resource constrained.
- Static diff/reference checks pass, and `pnpm-lock.yaml` is unchanged.

## Risks

- This touches central heartbeat and agent-route code, so legacy
compatibility is the primary risk.
- Runtime selection remains Codex-only and explicit; direct Codex,
Claude, OpenCode, process, HTTP, and plugin adapters remain on their
existing paths.
- Fresh native starts fail closed while the rollout flag is off;
persisted native records remain readable and recoverable.
- Cancellation, company/run binding, tool calls, status decisions, and
completion writes are guarded or replay-safe.

> For core feature work, check [ROADMAP.md](ROADMAP.md) first and
discuss it in #dev before opening the PR. Feature PRs that overlap with
planned core work may need to be redirected.

## Model Used

OpenAI Codex, GPT-5.6, with repository tools, code execution, and
parallel agent review.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in-PR
following the relevant issue template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id
- [ ] I have run tests locally and they pass — GitHub Actions is
authoritative for this resource-constrained checkout
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented risks above
- [ ] All Paperclip CI and security gates are green
- [ ] Greptile is 5/5 with no open actionable findings
- [x] I will address all Greptile and reviewer comments before merge

## Stack

- Position: 3 of 5 overall; lowest of 3 currently unmerged
- Base: `master`
- Previous:
[#12590](https://github.com/paperclipai/paperclip/pull/12590), qualified
Claude ACPX runtime — merged
- Next: [#12592](https://github.com/paperclipai/paperclip/pull/12592),
generalized Codex executor, task experience, and developer SDKs

---------

Co-authored-by: Dev Agent <dev@paperclip.ing>
2026-08-31 14:38:38 -05:00
dotta c8f8f6752f fix: address latest Greptile runtime review 2026-03-23 19:43:50 -05:00
dottaandPaperclip 0bb1ee3caa Recover agent instructions from disk
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:33 -05:00
dottaandPaperclip 1adfd30b3b fix: recover managed agent instructions from disk
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-23 16:57:33 -05:00
dottaandPaperclip 685c7549e1 Filter junk files from instructions bundles
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-18 21:47:53 -05:00
dottaandPaperclip 154a4a7ac1 Improve instructions bundle mode switching
Co-Authored-By: Paperclip <noreply@paperclip.ing>
2026-03-18 08:10:36 -05:00