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DottaandPaperclip 72b509c895 Recognize delivered workspaces and reap terminal worktrees (#10908)
## Thinking Path

> - Paperclip separates workspace provisioning lifecycle from whether
the work was actually delivered.
> - Git ancestry alone cannot recognize squash merges or deliveries into
a branch other than the workspace base.
> - A merged pull request linked from a terminal issue is stronger
delivery evidence for those cases.
> - The read contract should expose that evidence without changing
persisted workspace schema.
> - Cleanup must remain conservative: terminal descendants, delivered
work, and no active run checkout are all required.
> - Reusing the existing cleanup primitives keeps service shutdown,
lease cleanup, activity logging, and archival behavior consistent.
> - Focused regression coverage locks in both the honest read signal and
the fail-closed reaper guards.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Execution workspace close-readiness payloads and terminal workspace
cleanup.

**Current behavior**

Delivered squash-merged or cross-branch workspaces can remain `active`
and report a permanent “not merged” warning because git ancestry does
not contain their original commits.

**Proposed behavior**

Read payloads distinguish PR-confirmed delivery, ancestry delivery,
unmerged work, and unknown state. Fully terminal delivered workspace
trees are archived only when no active run holds the checkout.

**Reason and benefit**

Operators and automation receive an honest delivery signal, while
shipped worktrees stop looking active forever and genuinely unmerged
work retains its warning.

**Breaking changes**

The workspace payload gains a derived field. Existing fields and
persistence remain unchanged; no database migration is required.

**What happened?**

A delivered workspace can remain `active` and warn that it is not merged
forever after its issue ships through a squash or cross-branch pull
request.

**Expected behavior**

Pull-request delivery should be represented honestly, and a fully
terminal delivered workspace should become cleanup-eligible when no run
holds its checkout.

**Steps to reproduce**

1. Create an issue workspace with commits ahead of its configured base.
2. Deliver those commits with a squash merge or into a different target
branch.
3. Mark the source issue and descendants done, then read workspace close
readiness.

Before this change, the workspace remains active with a “not merged”
warning indefinitely.

## What Changed

- Added the derived `deliveryState` workspace contract: `merged_via_pr`,
`merged_by_ancestry`, `unmerged`, or `unknown`.
- Extracted a shared GitHub pull-request merge classifier and reused it
for merge confirmations and workspace delivery checks.
- Suppressed false ancestry warnings when a terminal issue has
ground-truth merged-PR evidence.
- Added an idempotent terminality reaper with descendant-terminal,
active-run, and delivered-work guards.
- Restricted PR delivery evidence to the source issue, then required
live merged state plus matching GitHub repository, head branch, and
current workspace HEAD; persisted status, stale PRs, lexical mentions,
inbound references, and descendant PRs cannot authorize cleanup.
- Preserved workspaces with modified or untracked files even when their
committed HEAD was delivered.
- Bounded both long-lived pull-request state caches to 1,000 entries
with oldest-entry eviction.
- Routed eligible workspaces through existing runtime shutdown, lease
cleanup, activity logging, and archival machinery with exclusive Git
index, HEAD, and branch-ref locks plus non-forced removal.
- Added regression coverage for delivery derivation, warning behavior,
reaper guards, scheduler wiring, and squash/cross-branch delivery.

## Verification

- `pnpm -r typecheck`
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/execution-workspaces-service.test.ts
src/__tests__/merged-pr-confirmation-sweep.test.ts
src/__tests__/server-startup-feedback-export.test.ts --reporter=verbose`
— 63 passed
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/execution-workspaces-service.test.ts --reporter=verbose`
after review hardening — 43 passed
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/execution-workspaces-service.test.ts
src/__tests__/merged-pr-confirmation-sweep.test.ts
src/__tests__/external-objects-service.test.ts --reporter=dot` on the
final local head — 73 passed
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-workspace-busy.test.ts --reporter=verbose` — 15
passed
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm test:run` —
server 3,662 passed (4 skipped), UI 3,599 passed, CLI 327 passed, shared
415 passed, and skills catalog 20 passed; the aggregate DB stage ran
both source and built copies of one unrelated embedded-Postgres
migration test and both reached its 5-second timeout
- `pnpm --filter @paperclipai/db exec vitest run
src/status-card-migrations.test.ts --reporter=verbose` — isolated
aggregate-timeout verification passed in 3.99 seconds
- `NODE_ENV=production pnpm build`
- `pnpm check:token-gates`

## Risks

The reaper intentionally fails closed when issue terminality,
pull-request state, git ancestry, or checkout ownership cannot be
proven. GitHub lookups can delay classification and cleanup but cannot
cause an unproven workspace to be archived. Automated terminal archival
holds exclusive Git index, HEAD, and branch-ref locks across validation
and removal, skips configured destructive hooks, and uses non-forced
removal so dirty writes fail closed. Reopening a source issue does not
restore an archived workspace; it emits an audit event so a human or
agent can re-provision explicitly.

## Model Used

OpenAI Codex, GPT-5. The runtime did not expose a more specific model ID
or context-window size. Reasoning, tool use, repository editing, test
execution, and GitHub CLI access were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 16:34:04 -05:00
Nicky LeachandPaperclip 8ac2526811 chore(plugin-daytona): pin @daytonaio/sdk to 0.203.0 (#10907)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Daytona sandbox provider lives in
`packages/plugins/sandbox-providers/daytona`
> - That plugin depends on `@daytonaio/sdk` for session control and
command execution
> - The stable SDK version moved forward, but the plugin still used an
older pin
> - This pull request pins the SDK to the current stable release and
keeps the package build and tests green
> - The benefit is the plugin uses the current client surface with a
very small change set

## Linked Issues or Issue Description

**What existing behavior does this improve?**
The Daytona plugin keeps an older `@daytonaio/sdk` pin than the current
stable release.

**Current behavior**
The plugin depends on `^0.171.0`.

**Proposed behavior**
The plugin pins `@daytonaio/sdk` to `0.203.0`.

**Reason and benefit**
The plugin uses the current stable client. The build and the existing
tests still pass with the real 0.203.0 types. The change keeps the
tracked diff small.

**Breaking changes**
None. The package manifest changes only the SDK pin. The workspace
package is excluded from the root lockfile.

**Additional context**
Refs #7333, which updated the same package to `0.183.0`.

## What Changed

- Updated `packages/plugins/sandbox-providers/daytona/package.json` to
pin `@daytonaio/sdk` at `0.203.0`.
- Kept the change limited to the plugin package manifest.

## Verification

- `pnpm run build` in the plugin directory passed.
- `pnpm exec vitest run --config
packages/plugins/sandbox-providers/daytona/vitest.config.ts` passed.
- `git status` showed only the one-line manifest change before the PR
open step.
- `git fetch origin chore/daytona-sdk-0-203-0` returned
`d2592644e80dfac2cfae6d9ccc2188267fe75758`.
- `git diff --stat origin/master...HEAD` showed only the one manifest
file change.

## Risks

- Low risk. The change only updates a package pin.
- The plugin build and tests already passed against the new SDK surface.
- A future SDK release could need a follow-up pin update.

## Model Used

OpenAI Codex, GPT-5, tool-use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [ ] I have added or updated tests where applicable
- [ ] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 11:52:35 -07:00
Devin Foley ffd62a4cbb fix(adapter-utils): carry the workspace origin remote into transported git workspaces (#10873)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - When an agent runs on a different host (sandbox or SSH), the adapter
transport copies the local git execution workspace to that host and
syncs changes back after the run
> - The transport materializes the remote copy with `git init` plus a
depth-1 or bundle fetch, so the copy has no `origin` remote and its head
reads as a parentless snapshot commit
> - An agent asked to publish its branch (push it, open a pull request)
sees "no remote, root snapshot" and must hand the publish step back to a
human operator, even when the branch base is a commit the upstream
remote already holds
> - This pull request carries the workspace's `origin` URL
(credential-scrubbed) onto the transported copy as metadata
> - The benefit is that branches produced in transported workspaces stay
publishable by any actor with credentials, while the transport itself
still never fetches or pushes

## Linked Issues or Issue Description

No public issue exists. Description follows the enhancement template:

**What existing behavior does this improve?**

The workspace transport in `@paperclipai/adapter-utils` already copies a
git workspace to the execution host and back. This change improves the
fidelity of that copy: the transported repo keeps the workspace's
`origin` remote instead of losing it.

**Subsystem affected**

Adapter utilities — the sandbox transport
(`withShallowGitWorkspaceClone` in
`packages/adapter-utils/src/git-workspace-sync.ts`) and the SSH
transport (`importGitWorkspaceToSsh` in
`packages/adapter-utils/src/ssh.ts`).

**Current behavior**

The transported copy is built with `git init` plus a depth-1 (sandbox)
or bundle (SSH) fetch. It has no remotes. `git remote -v` is empty and
the head commit reads as a root snapshot with no visible ancestry.
Agents and operators inside the execution host cannot fetch real
ancestry or push a branch, even when the branch base is a commit the
upstream remote already holds.

**Proposed behavior**

The transport reads the source workspace's `origin` URL, scrubs
credentials from it, and configures it on the transported copy. The
sandbox path adds the remote to the fresh clone. The SSH path sets or
adds the remote in the remote setup script, which also covers reused
workspace directories. A workspace with no `origin` transports exactly
as before.

**Reason and benefit**

A branch committed in a transported workspace becomes publishable in
place: the shallow boundary commit already exists on the remote, so a
push pack closes without full local ancestry (a new test locks in this
property). Fetching real ancestry also becomes possible for whoever
holds credentials. Without this, agents must describe their change in a
handoff document and a human must reconstruct the branch by hand.

**Breaking changes**

None. The URL copy is best-effort and metadata-only. The transport never
fetches from or pushes to the remote. The no-remote-git contract holds:
sync-back through the local cwd stays the only cross-run persistence
path, and `packages/adapters/AUTHORING.md` gains a paragraph that makes
the carried-remote nuance explicit.

## What Changed

- `packages/adapter-utils/src/git-workspace-sync.ts`: new
`sanitizeGitRemoteUrl` (strips http(s) userinfo, where tokens can be
embedded; scp-like/ssh forms and filesystem paths pass through) and
`readSanitizedOriginRemoteUrl`; `withShallowGitWorkspaceClone`
configures the scrubbed `origin` on the fresh clone, best-effort.
- `packages/adapter-utils/src/ssh.ts`: `importGitWorkspaceToSsh` sets or
adds the scrubbed `origin` in the remote setup script, non-fatal under
`set -e`.
- `packages/adapter-utils/src/git-workspace-sync.test.ts`: four new
integration cases (remote copied, credentials scrubbed, no-origin
unchanged, push from the shallow clone to an origin that holds the base
commit) plus `sanitizeGitRemoteUrl` unit tests.
- `packages/adapters/AUTHORING.md`: documents that a transported copy
may carry a credential-scrubbed `origin` as metadata, and why this does
not weaken the no-remote-git contract.

## Verification

- `npx vitest run packages/adapter-utils/src/git-workspace-sync.test.ts`
— 12/12 pass (4 new integration cases + sanitizer unit tests).
- `npx vitest run
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` — 24/24
pass.
- `npx vitest run packages/adapter-utils/src/ssh-fixture.test.ts` —
16/16 pass, including the `no-remote-git contract` case (a workspace
without `origin` still round-trips with no remote introduced at any
point).
- `node scripts/check-no-git-push.mjs` — passes; this change adds no
push or fetch to adapter/runtime code.
- `pnpm typecheck` in `packages/adapter-utils` — clean.

## Risks

- Low risk. The change is additive metadata on the transported copy
only; failure to record the remote never fails the transport.
- Credential exposure is the real hazard and is handled: http(s)
userinfo is stripped before the URL leaves the host. Non-http forms
(scp-like, `ssh://`) carry no secret in the URL and pass through.
- A reused SSH workspace whose project `origin` changed now gets the
current URL via `set-url` instead of keeping a stale one.

## Model Used

Claude Fable 5 (`claude-fable-5`), Anthropic — extended thinking,
agentic tool use via Claude Code CLI.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-08-05 10:24:01 -07:00
DottaandPaperclip 1fa36be353 fix(ui): use HTTP-safe clipboard copy everywhere (#10875)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators often open self-hosted Paperclip over plain HTTP on a LAN
or private network.
> - Browser Clipboard API writes are not reliable in that insecure
context.
> - Paperclip already has one shared helper with a legacy copy fallback,
but many current copy actions bypass it.
> - This pull request routes every core UI copy action and the
first-party workspace-diff plugin through the shared helper.
> - The benefit is consistent copy behavior on HTTPS, localhost, and
plain-HTTP private deployments.

## Linked Issues or Issue Description

Refs #3529.

This change supersedes the stale prior attempt in #3531. Current master
has more copy surfaces and a first-party plugin UI bridge that the prior
branch does not cover.

## What Changed

- Replaced direct Clipboard API writes and duplicate fallback
implementations across the current core UI with `copyTextToClipboard`.
- Added an HTTP-safe clipboard function to the plugin UI SDK and wired
the host bridge to the same implementation.
- Migrated the first-party workspace-diff plugin to the plugin SDK
clipboard function.
- Added unit coverage for native rejection fallback and plugin host
delegation.
- Added a source-level regression test that rejects new direct clipboard
writes outside the shared implementation.
- Documented the plugin UI clipboard function.

## Verification

- `NODE_ENV=test pnpm exec vitest run ...` for 14 affected suites: 164
tests passed.
- `pnpm exec vitest run tests/ui-clipboard.test.ts` in
`packages/plugins/sdk`: 1 test passed.
- `NODE_ENV=test pnpm -r typecheck`: passed for 31 workspace projects.
- `NODE_ENV=test pnpm test:run`: passed.
- `NODE_ENV=production pnpm build`: passed.
- `pnpm check:token-gates`: passed with all gates clean.

## Risks

Low risk. Secure contexts still use the modern Clipboard API. Plain HTTP
and rejected modern writes use the existing `execCommand("copy")`
fallback. That API is deprecated, but it is the compatibility path
required for insecure contexts. The change has no schema, API, or visual
design effect.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex, `gpt-5.6-sol`. The runtime did not expose a context-window
size. Reasoning, tool use, repository editing, test execution, and
GitHub CLI access were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 10:45:08 -05:00
DottaandPaperclip 6ffe9df842 fix(auth): clarify protected-agent assignment blocks (#10893)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Task assignment policies control which agents can receive work.
> - Protected-agent policy flags currently stop assignment.
> - The existing error says that the assignment requires approval.
> - Paperclip has no approval workflow for this policy.
> - This pull request models the policy as a hard block and gives the
operator an action that exists.
> - The benefit is accurate API guidance without weakening the existing
fail-closed behavior.

## Linked Issues or Issue Description

Refs #6386

**What happened?**

A protected-agent assignment denial said that approval was required. No
approval record or approval action existed for this policy, so the
message sent agents and operators to a dead end.

**Expected behavior**

The authorization result must state that protected-agent policy blocks
assignment. It must tell a company administrator to remove the block
before retrying.

**Steps to reproduce**

1. Set `authorizationPolicy.protectedAgent.requiresApproval` to `true`
on a target agent.
2. Give another agent the `tasks:assign` permission.
3. Preview or attempt assignment to the protected agent.
4. Observe that the old response promises an approval step that does not
exist.

**Paperclip version or commit**

`c54936e2e9` on `master`.

**Deployment mode**

Built from source. The behavior is in the core authorization service and
is not deployment-specific.

**Agent adapter(s) involved**

Not adapter-specific.

## What Changed

- Added canonical `protectedAgent.blockAssignment` and
`protectedAgent.blockReason` policy fields.
- Kept the legacy approval-named flags as fail-closed compatibility
aliases.
- Changed denial copy to name the hard block and the administrator
action.
- Added authorization and plugin-host regression coverage for canonical
and legacy policy data.
- Updated the V1 implementation contract with the protected-assignment
rule.

## Verification

- `pnpm exec vitest run
server/src/__tests__/authorization-service.test.ts
server/src/__tests__/plugin-access-authorization-host-services.test.ts`
— 2 files passed, 61 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/shared build` — passed.
- `pnpm --filter @paperclipai/server build` — passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --check public-gh/master...HEAD` — passed.

The repository-wide local wrappers exceeded the execution host resource
limit before they printed a final summary. The PR check loop will use
GitHub CI as the complete test and build authority.

## Risks

- Low: assignment remains fail-closed. The change corrects the policy
name and denial guidance.
- Low: legacy fields remain supported, so existing plugin-owned policy
data does not change behavior.
- Low: the new policy schemas allow unknown keys for forward
compatibility, as the existing authorization policy schema already does.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5`, tool-enabled coding agent with
reasoning, shell, Git, and GitHub CLI access. The runtime does not
expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 10:09:17 -05:00
DottaandPaperclip ef33c1d9ed fix(decisions): retire completed-target decisions and link targets from the card (#10892)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The decisions desk shows pending decisions that need an operator
response
> - A strict decision cannot apply its effects after its target task
changes
> - A decision still remained pending when every target task finished
after proposal
> - The card also linked only the origin task, even when the decision
acted on another task
> - This pull request expires those moot decisions and links their
target tasks
> - The benefit is an accurate queue and a clear path to the work that
each decision affects

## Linked Issues or Issue Description

Related PR: #10801 removes the issue-page decision strip, which makes
clear queue provenance more important.

**What happened?**

A strict decision stayed pending until its time-to-live limit after
every target task reached `done`. The decision card linked only the
origin task. The origin task is where the agent proposed the decision,
and it can differ from the task that the decision affects. An operator
could therefore open a finished task with no visible decision and no
explanation of the real target.

**Expected behavior**

Paperclip must expire a strict decision when all of its targets finish
after the decision is proposed. The card must show and link every target
task that differs from the origin task.

**Steps to reproduce**

1. Create a strict decision that targets an active task from a different
origin task.
2. Move the target task to `done` without resolving the decision.
3. Run the decision expiry sweep.
4. Observe that the old code keeps the decision open until its
time-to-live limit.
5. Observe that the old card links only the origin task.

**Paperclip version or commit**

The bug reproduces on upstream `master` before this pull request.

**Deployment mode**

Local dev and self-hosted server modes are affected because the behavior
is in the shared decision service and board UI.

## What Changed

- Expire an open strict decision with reason `target_completed` when
every strict target reached `done` after proposal.
- Keep decisions that intentionally target an already-finished task.
- Keep lenient-only decisions open.
- Keep continuation delivery consistent with other expiry reasons.
- Add target-task links to the decision card provenance line.
- Use one shared target-ID helper across signing, execution, expiry,
card provenance, and resolver preloading.
- Add service and UI regression tests for primary, secondary, and
target-completed cases.

## Verification

- `pnpm exec vitest run ui/src/components/DecisionCard.test.tsx
server/src/__tests__/decisions-service.test.ts` — 51 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm check:token-gates` — all gates clean.
- `git diff --check origin/master...HEAD` — passed.

## Risks

- Low migration risk. This change does not alter the database schema.
- The expiry sweep performs the existing strict-target query and adds a
snapshot comparison before expiry.
- A decision remains open if any strict target is active or if a target
was already `done` at proposal time.

> The roadmap lists work queues as planned. This pull request fixes the
existing decisions desk. It does not add a new queue subsystem.

## Model Used

- Implementation: Anthropic Claude through Claude Code. The runtime did
not expose the exact model snapshot or context-window size. The model
used reasoning, repository tools, code execution, and test execution.
- PR preparation: OpenAI Codex with GPT-5. The runtime did not expose a
dated model snapshot or context-window size. The model used reasoning,
repository tools, code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-05 09:55:01 -05:00
c54936e2e9 fix(openclaw-gateway): use per-agent claimedApiKeyPath in wake text (#4668)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The `openclaw-gateway` adapter wakes a remote agent over a WebSocket
gateway. It sends a wake prompt. That prompt tells the agent which
environment variables to set and which file holds its Paperclip API key.
> - Each agent stores its claimed key in its own JSON file. The adapter
already exposes a `claimedApiKeyPath` config field for this. The field
is documented in `src/index.ts`. It also has an input in the agent
settings UI.
> - `buildWakeText` ignored that field. It hardcoded the shared default
path into the wake prompt text.
> - Every agent therefore read the same key file at wake time. Agents
authenticated as the wrong identity. The first API call failed.
> - This pull request passes `ctx.config.claimedApiKeyPath` into
`buildWakeText`. It uses the existing `resolveClaimedApiKeyPath` helper.
That helper falls back to the documented default.
> - The benefit is that each agent reads its own claimed-key file. Each
agent authenticates as itself.

## Linked Issues or Issue Description

Fixes #10071
Fixes #4976
Fixes #3098
Fixes #8076

These four open issues report the same defect. Earlier duplicates are
already closed: Refs #2561, Refs #2592, Refs #930.

Related pull requests that address the same root problem (duplicate
search):

- #3396 — same core change, no tests
- #3370 — heavier approach, injects `PAPERCLIP_CLAIMED_API_KEY_PATH`
into the wake env and adds server onboarding defaults
- #5970 — renames the config field to `paperclipApiKeyPath`
- #8072 — same core change, bundled with an unrelated protocol-version
change
- #784 — adds shell quoting and preflight instructions
- #3296 — bundled with an unrelated Claude hello-probe fix

## What Changed

- `packages/adapters/openclaw-gateway/src/server/execute.ts`
- `buildWakeText` now accepts `claimedApiKeyPath` as a parameter. It no
longer hardcodes the path.
- The `execute` call site passes
`resolveClaimedApiKeyPath(ctx.config.claimedApiKeyPath)`. That helper
returns the documented default
`~/.openclaw/workspace/paperclip-claimed-api-key.json` when the agent
sets no override.
  - `resolveClaimedApiKeyPath` is now exported so tests can call it.
- `packages/adapters/openclaw-gateway/src/server/execute.test.ts` — adds
`resolveClaimedApiKeyPath` cases: a configured value, an empty string, a
whitespace-only string, `undefined`, `null`, and non-string input.
- `packages/adapters/openclaw-gateway/vitest.config.ts` (new) —
package-level vitest config. It matches the config used by sibling
adapters such as `opencode-local`.
- `vitest.config.ts` (root) — adds the adapter to the workspace project
list.
- `scripts/run-vitest-stable.mjs` — adds
`@paperclipai/adapter-openclaw-gateway` to `nonServerProjects`.
**Maintainer-added during rebase.** The CI test lanes do not run a bare
`vitest`. They call `run-vitest-stable.mjs`, which invokes vitest with
an explicit `--project` allowlist. Without this entry the CI lanes skip
this package, and the root project-list entry alone has no effect on CI.

## Verification

Run the package suite directly:

```
pnpm install --frozen-lockfile
pnpm exec vitest run --project @paperclipai/adapter-openclaw-gateway
```

The suite covers `resolveSessionKey`, `buildAgentParams`, and the new
`resolveClaimedApiKeyPath` cases. The first two already existed in this
file but never executed in CI before this change.

Typecheck the package:

```
pnpm --filter @paperclipai/adapter-openclaw-gateway typecheck
```

Behavioural check, which no automated test covers:

1. Set `claimedApiKeyPath` to a per-agent value such as
`~/.openclaw/workspace/paperclip-keys/<agent>.json` in the agent's
gateway adapter settings.
2. Trigger a wake for that agent.
3. Confirm the rendered wake text names that file. It must not name the
shared default.

Maintainer note: this branch was rebased onto current `master` by a
maintainer. The original branch was two months stale. Only two conflicts
occurred, both additive: the import line and the tail of
`execute.test.ts`, and the project list in the root `vitest.config.ts`.
The `execute.ts` change applied without conflict. CI and Greptile re-run
against the rebased head.

## Risks

- Low for existing deployments. `resolveClaimedApiKeyPath` preserves the
default path exactly. Any agent that never set `claimedApiKeyPath`
receives the same wake text as before.
- The behaviour changes only for agents that already set a per-agent
path. Those agents previously received the wrong instruction. They now
receive the correct one.
- No database, schema, or API surface changes.
- CI now runs this package's test file for the first time. That file
includes the pre-existing `resolveSessionKey` and `buildAgentParams`
tests, which were never executed before.
- Five other adapters (`cursor-cloud`, `cursor-local`, `gemini-local`,
`grok-local`, `pi-local`) sit in the root project list but remain absent
from the CI allowlist. This pull request does not change them. That gap
is tracked separately.

## Model Used

- Contributor's change: Anthropic Claude, model ID `claude-opus-4-7`,
approximately 200K context, extended thinking. Used for triage, patch
authoring, and the original description.
- Rebase, the `run-vitest-stable.mjs` entry, and this description:
Anthropic Claude, model ID `claude-opus-5`, tool use enabled. Run by a
Paperclip maintainer.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— the branch name carries an internal ticket id. A fork branch cannot be
renamed without opening a new pull request, so this is left as-is. The
internal reference has been removed from the description.
- [ ] I have run tests locally and they pass — the contributor verified
the pre-rebase branch. The rebased head is verified by CI on this pull
request.
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes —
`claimedApiKeyPath` is already documented in `src/index.ts` and exposed
in the agent settings UI, so no documentation change is needed
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green — pending the post-rebase run
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups —
pending re-review of the rebased head
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Pieter (CTO) <pieter@openclaw.local>
Co-authored-by: Andrew Aymeloglu <aaymeloglu@gmail.com>
2026-08-05 00:53:43 -05:00
DottaandClaude Opus 5 e8ae5286eb feat(issues): explain cross-task agent writes with attribution, audit receipts, and actionable denials (#10843)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents write to tasks they do not own. They comment, they change
fields, and the control plane now permits this by default for
standard-trust agents on any task they can read
> - This makes a task thread ambiguous. A reader sees a comment from an
agent that is not the assignee, but no surface says whose authority that
write rode
> - The same gap applies to field edits. The activity stream named the
verb, but it did not show the before value, the after value, or the
reason the write was permitted
> - The remaining refusals are also opaque. An agent that hits a wall
receives a 403 with no boundary name, no actor who can act, and no
sanctioned path. One real incident spent a full detour to find the
workaround
> - This pull request adds the three surfaces that make open cross-task
writes legible: an attribution chip, a field-level audit receipt, and an
actionable denial contract shared by the API and the UI
> - The benefit is that a reader can answer "who did this, on whose
authority, and was it allowed?" on the task itself, and a blocked writer
is told what to do next

## Linked Issues or Issue Description

No public issue exists for this work, so the enhancement is described
here.

**What existing behavior does this improve?**

Cross-task agent writes are permitted, but they are not explained. A
task thread can hold comments from agents that are not the assignee, and
the activity stream can hold field changes made by those agents. Neither
surface names the responsible user behind the write. When a write is
refused, the error text does not name the boundary or the way forward.

**Subsystem affected**

Issue detail UI (comment thread and activity stream), the issue write
authorization responses in the server, and the shared copy contract that
both consume.

**Current behavior**

- An agent comment on a task the agent does not own looks the same as an
assignee comment.
- An `issue.updated` activity row states the verb only. It does not show
the field-level before and after values, the responsible user, or the
authorization reason.
- A refused write returns a short message such as an ownership error.
The message does not state which rule fired, who is able to perform the
action, or which alternative path is sanctioned.

**Proposed behavior**

- An agent comment on a task the agent does not own carries a chip that
reads "for {user}". The chip names the responsible user. Its tooltip
states that the author is not the assignee and cannot exceed that user's
permissions.
- Each `issue.updated` row shows a receipt: the changed fields with
before and after values, the responsible user, and the authorization
reason. This applies to board edits as well as agent edits.
- Each refusal states three things: the boundary that fired, who is able
to act, and the sanctioned path. The API error body and the in-app
notice use the same words, because both read one shared contract.

Related pull requests, found by searching this repository:

- Refs #10837 — merged. It added the default-open cross-task write rule,
the comment attribution data, and the per-run containment cap that this
pull request makes visible.
- Refs #10114 — open. It proposes a narrower authorization change in the
same area.
- Refs #7998 — open. It proposes append-only cross-assignee comments as
an alternative to opening writes.

## What Changed

- Adds `packages/shared/src/issue-write-denial.ts`. This is one copy
contract for eight ways an issue write can be refused: not visible,
responsible-user ceiling, responsible user unavailable, excluded actor
class, assignee run lock, per-run cross-task cap, missing run context,
and rejected attribution. Each entry names the boundary, who can act,
and the sanctioned path.
- Maps server authorization decisions onto that contract in
`server/src/routes/issues.ts` and
`server/src/services/cross-issue-influence-limit.ts`. The flattened
`error` string carries all three obligations, and `details.code` lets
the UI render the same words. The two cap codes keep the names they
already ship under.
- Adds `CommentAttributionChip`. It renders "for {user}" beside the
author name on agent comments where the author is not the assignee. It
renders nothing when no responsible user is recorded, so older rows stay
clean. It is wired into both `IssueChatThread` and the flagged
`TaskChatThread` redesign.
- Adds `IssueFieldChangeReceipt`. It renders the change receipt under
`issue.updated` rows in the activity stream. Ids resolve to agent and
user names where the directory is loaded. Server-truncated text is
labelled as a preview, so the receipt never implies that it shows a
whole value.
- Adds `IssueWriteDenialNotice`. It renders the shared copy in the app,
keyed off the denial events the server logs on a task.
- Adds a public `/ux-lab/cross-issue-collaboration` page. It renders all
three surfaces and their edge cases for review without a seeded thread.
This follows the existing `ux-lab` pages.

## Verification

Automated, all green:

```
pnpm --filter @paperclipai/shared exec vitest run src/issue-write-denial.test.ts        # 17 tests
pnpm --filter @paperclipai/ui exec vitest run src/components/IssueWriteDenialNotice.test.tsx \
  src/components/IssueFieldChangeReceipt.test.tsx src/components/CommentAttributionChip.test.tsx \
  src/lib/issue-change-receipt.test.ts src/lib/comment-attribution.test.ts                # 46 tests
pnpm --filter @paperclipai/server exec vitest run src/__tests__/cross-issue-influence-limit.test.ts \
  src/__tests__/issue-comment-attribution-audit-routes.test.ts \
  src/__tests__/issue-agent-mutation-ownership-routes.test.ts \
  src/__tests__/low-trust-red-team-routes.test.ts                                        # 98 tests
```

`tsc --noEmit` passes for the shared, ui, and server packages.

Manual, in a browser:

1. Start the UI only: `pnpm --filter @paperclipai/ui exec vite`.
2. Open `/ux-lab/cross-issue-collaboration`. No session is needed,
because `ux-lab` routes are public.
3. All three surfaces were captured at 1440x900 in light mode and dark
mode, and at 390x844. The page reported no errors.
4. The chip tooltip was opened by a hover and by a keyboard focus.

Rendering the page found defects that the tests had missed. Three copy
and contrast defects were fixed, and two of them are now pinned by a
test. A design review then found three layout defects, which are also
fixed: the denial notice orphaned its label when a value wrapped, the
receipt icon wrapped onto its own line at narrow widths, and the chip
tooltip was reachable by hover only.

## Risks

Low risk, and additive.

- Every new surface renders nothing when its data is absent. Comments
without a recorded responsible user show no chip, and activity events
without a receipt show no receipt, so existing rows do not change.
- No migration is included. The data these surfaces read already ships.
- The wire values of the two per-run cap denial codes are unchanged.
Only the human-readable text changes, plus six codes that had no
`details.code` before.
- The denial copy is read by agents as well as people. If wording must
change later, one shared module is the only place to change it.
- Roadmap check: this extends the completed "Activity log & action
attribution" area rather than duplicating planned core work.

## Model Used

Claude Opus 5 (Anthropic), model id `claude-opus-5[1m]`, 1M context
window, extended thinking, with tool use and code execution. It ran as
an agent in Claude Code and drove a real browser to capture the review
screenshots.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-04 23:02:51 -05:00
Nicky LeachandPaperclip d114c4925e feat(observability): give sandbox sync spans true wall-clock width (#10864)
## Thinking Path

> - Paperclip keeps company work visible and governed.
> - Sandbox agents run serial sync work across worker and host
boundaries.
> - The current span path hid real wall-clock time for that sync work.
> - The host needs safe timestamps if it wants true span width.
> - This pull request carries worker timestamps, validates them, and
records the real duration.
> - The benefit is clearer operator visibility for sandbox sync work.

## Linked Issues or Issue Description

**Subsystem affected**
Cross-cutting. This touches `packages/plugins`, `server`, and the
Daytona plugin test surface.

**Problem or motivation**
Sandbox sync spans opened and closed in one host call. The native width
stayed near zero, so the real time spent in serial round trips was hard
to see.

**Proposed solution**
Carry worker start and end times across the span record protocol.
Validate the pair at the host boundary. Record the host span with the
true duration when the pair is safe.

**Alternatives considered**
Keep the numeric duration only. That keeps the data, but it does not
widen the span and it does not show the real wall-clock time.

**Roadmap alignment**
This fits the `Cloud / Sandbox agents` and `Artifacts & Work Products`
areas in `ROADMAP.md`. I found no other roadmap item that covers this
span-width gap.

**Additional context**
The host allowlist stays narrow. Unknown names still map to
`sandbox.provider.other`. Invalid timestamp pairs still fall back to the
synchronous path.

Related public PRs: none found.

## What Changed

- Added optional `startTimeMs` and `endTimeMs` fields to the
`span.record` protocol.
- Captured start and end times in the worker tracer and sent them to the
host.
- Validated host timestamps with finite, ordered, bounded checks before
span reconstruction.
- Extended the host allowlist to the sandbox sync command names.
- Wrapped each inbound sync round trip in its own named span.
- Added tests for the worker path, host boundary, host recorder, and
Daytona sync flow.

## Verification

- `pnpm --filter @paperclipai/plugins-sdk test`
- `pnpm --filter @paperclipai/server test`
- `pnpm --filter @paperclipai/daytona-plugin test`
- `pnpm --filter @paperclipai/server tsc --noEmit` still shows
pre-existing `drizzle-orm` duplicate-declaration errors in this sandbox.
The changed files do not touch those lines.
- GitHub checks are green.
- Greptile review is 5/5.
- No open review threads remain.

## Risks

- A bad timestamp pair can fall back to the synchronous path.
- The host clock gate can reject spans if the pair is stale, reversed,
or too large.
- The new worker fields change the wire protocol, but the public plugin
tracer contract stays the same.

## Model Used

OpenAI GPT-5, tool-enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes: #` / `Closes #`
/ `Refs #` or described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-04 19:52:15 -07:00
Nicky LeachandPaperclip 7e592c33fa feat(codex): add identity-keyed host credential cache (#10853)
## Thinking Path

> - Paperclip manages agent work as issues and pull requests.
> - This change lives in the Codex local adapter path.
> - The host auth flow needs a stable cache per identity.
> - The cache must not change the copy-back path or the default store
overwrite.
> - This pull request adds that cache and keeps the existing flow
intact.
> - The benefit is repeatable host auth with safer identity scoping.

## Linked Issues or Issue Description

**Subsystem affected**
- packages/adapters: Codex local adapter and host auth flow

**Problem or motivation**
- The host auth flow needs one usable credential per identity.
- The current flow does not keep that identity state in a separate
cache.

**Proposed solution**
- Add an identity-keyed host credential cache.
- Keep the cache company scoped.
- Add an opt-in seed mode for the merge decision helper.
- Write the cache at copy-back time without changing the default store
overwrite.

**Alternatives considered**
- Store the cache in the instance-global root.
- Seed the host default store through an environment flag.
- Both choices weaken isolation or caller control, so I did not use
them.

**Roadmap alignment**
- I checked `ROADMAP.md`.
- I found no direct overlap with an active roadmap item.
- The change fits the core auth and secrets direction.

**Additional context**
- Local tests passed before I opened this pull request.
- I found no direct duplicate pull request for this branch.

## What Changed

- Added `codex-auth-cache.ts` for company scoped cache storage and
identity anchored vending.
- Added `codex-auth-merge-decision.cjs` support for a leading
`--seed-if-dest-absent` flag.
- Updated `codex-auth-copyback.ts` to write the cache at teardown under
the merge lock.
- Wired `execute.ts` to use the identity anchored vend before the
managed home seed step.
- Added `CODEX-AUTH-CACHE.md` for the cache rules, directions, state
matrix, off switch, and clear action.
- Added and updated tests for cache behavior, merge decision flow, and
copy-back flow.

## Verification

- `pnpm --filter @paperclipai/adapter-codex-local exec vitest run`.
- `node_modules/.bin/vitest run --project @paperclipai/adapter-utils
workspace-restore-merge`.
- `tsc --noEmit` in `packages/adapters/codex-local`.
- `git log --oneline
origin/master..origin/feat/codex-auth-identity-cache` shows the expected
commits.

## Risks

- This change touches credential storage.
- A mistake in the cache path could break host auth for one identity.
- The tests reduce this risk, but the surface stays sensitive.

## Model Used

- OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes:` / `Closes:` /
`Refs:` or described the issue in the pull request body
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-04 16:33:54 -07:00
Nicky LeachandPaperclip c647b8cc2e feat(acpx-engine): give sandbox.exec spans real parents (#10852)
## Thinking Path

> - Paperclip uses spans and traces to show how work moves through
agents and tools
> - sandbox.exec spans need a real parent so the trace tree matches the
work tree
> - Wrong parent links make execution history hard to read and hard to
debug
> - This pull request adds a single task.run root span and re-parents
live work to the nearest active span
> - The change keeps detached work under the closest live span instead
of the HTTP root
> - The benefit is a clear trace tree for sandbox.exec work and better
execution diagnosis

## Linked Issues or Issue Description

**What happened?**

sandbox.exec spans attached to the wrong parent or to no live parent in
some paths.

**Expected behavior**

Each sandbox.exec span should attach to the nearest live span.

**Steps to reproduce**

1. Run work that creates sandbox.exec spans during startup and callback
bridge paths.
2. Inspect the trace tree.
3. Observe an orphaned span or a span with the wrong parent.

**Paperclip version or commit**

`672e9de9c8b004aebc1f08e24b612ab067735ad1`

**Deployment mode**

Local dev.

**Additional context**

The branch adds the task.run root span, parents sandbox.startup to it,
and re-parents detached bridge work to the nearest live span.

## What Changed

- Added a task.run root span for the run tree.
- Re-parented sandbox.startup, agent.turn, and detached bridge work to
the nearest live span.
- Added end-to-end trace-tree assertions for the full parent chain.
- Added negative coverage so sandbox.exec does not parent to the HTTP
root.

## Verification

- Focused Vitest suite passed:
`packages/adapter-utils/src/acpx-engine/execute.test.ts`,
`packages/adapter-utils/src/acpx-engine/startup-timing.test.ts`,
`packages/adapter-utils/src/execution-target-sandbox.test.ts`,
`packages/adapter-utils/src/sandbox-callback-bridge.test.ts`, and
`server/src/__tests__/environment-execution-target.test.ts`.
- Result: 5 files passed, 204 tests passed.
- The submitted branch also reported `adapter-utils` checks, `server`
seam checks, and `tsc` exit 0 in the handoff state.

## Risks

- This change can alter trace tree shape in tools that read parent
spans.
- A missed bridge path could still point to the wrong live span.
- Low risk for runtime behavior, because the change only changes span
parent attribution.

## Model Used

OpenAI GPT-5, tool-use capable.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-04 15:32:41 -07:00
678728f650 feat: maintained in_review review-path contract + stalled-review actions (#10675)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents move issues to `in_review` and rely on a "review path" (an
interaction, an approval, a monitor, or a named reviewer) to tell them
who decides next.
> - That review path can silently disappear. A user comment supersedes
the pending interaction, a monitor is exhausted, or a run ends without
restoring a path. The issue then sits in `in_review` with nobody
reviewing it and no visible action.
> - Such issues become invisible zombies. Nobody knows a decision is
owed, so the work stalls forever.
> - This pull request makes the review path a maintained invariant,
exposes a `reviewAttention` surface, and gives every stalled review
three inline actions in the UI.
> - The benefit is that an `in_review` issue always shows who reviews
it, or shows an amber "nobody is reviewing this" notice with one-click
Approve, Request changes, and Send back to work.

## Linked Issues or Issue Description

This pull request describes the problem inline. The tracking issue is
internal.

**Subsystem affected**

The review and attention loop that agents and humans share: the
`in_review` status, the `reviewAttention` surface, the /decisions
attention feed, and the issue-page review panel.

**Problem or motivation**

Agent-owned issues in `in_review` can lose their last review path. A
user comment supersedes the pending interaction. A monitor is exhausted.
A run ends without restoring a path. The issue then sits in `in_review`
with no reviewer and no visible action. It becomes an invisible zombie
and the work never progresses.

**Proposed solution**

Maintain the review path as a server invariant. Expose a
`reviewAttention` field that says what is under review, who decides, and
since when. Render a persistent review panel on the issue page and
inline actions on the /decisions feed. Keep human PATCHes into
`in_review` ungated, but record the requesting user so the panel never
renders empty.

**Alternatives considered**

A pure background auto-recovery sweep. This stays opt-in and is not
enough on its own, because it is invisible to the human. A bare status
banner. This is rejected, because it gives no action to resolve the
stall.

**Roadmap alignment**

This improves the core review and attention loop that both agents and
humans use every day.

## What Changed

- **Server — maintained review-path invariant:** when an issue enters or
sits in `in_review`, the server derives and persists a review path
(interaction, approval, monitor, or the requesting user) and recovers a
stale path with one bounded wake instead of leaving the issue pathless.
- **Server — `reviewAttention` surface:** a new field describes what is
under review (bound target with links), who decides, since when, and
whether the review is stalled. Stalled agent-assigned reviews are now
included in the attention feed.
- **Server — inline stalled-review decisions:** secured routes let a
permitted responder Approve (→ `done`), Request changes (→ `todo` + wake
carrying the note), or Send back to work (→ `todo` + wake) directly from
the attention feed.
- **Server — resume-intent wake:** an `in_review -> todo` transition now
wakes the assigned agent so a resumed review is not dropped.
- **Server — user-entry symmetry:** user PATCHes into `in_review` stay
ungated (no 422 for humans) and record the requesting user, who becomes
the named responder when no other path exists.
- **UI — review panel:** a persistent `IssueReviewPanel` renders above
the thread whenever status is `in_review`. The covered state shows the
bound target, responder, and outcomes and hoists the pending
interaction/approval card. The stalled state shows the amber notice plus
the three actions.
- **UI — decisions card actions:** the same three actions render inline
on the /decisions `AttentionQueueRow`.
- **UI — responsive fix:** the stalled action row stacks to full-width
buttons at phone width and returns to a horizontal row at `sm` and up.
New 390px stories capture the phone layout.

## Verification

- `cd ui && npx vitest run src/components/IssueReviewPanel.test.tsx
src/components/AttentionQueueRow.test.tsx src/lib/attention.test.ts
src/api/issues.test.ts` — 91 tests pass.
- Server suites added and updated: `issue-review-attention`,
`issue-stalled-review-decision-routes`, `review-path-recovery`,
`recovery-observability`, and related route/liveness tests (run by CI).
- A designer reviewed the UI at 390px and desktop in light and dark
themes on both the issue-page panel and the /decisions card. The stalled
action row stacks cleanly at phone width with no overlap and keeps the
horizontal row on desktop.

## Risks

- **Migration:** adds migration `0200` (next after master `0199`, no
renumber). It extends the agent-wakeup-requests schema and is additive.
- **Behavioral shift:** `in_review -> todo` now dispatches a wake. This
is intended (resume intent) and covered by tests.
- **Authz:** the inline decision routes are permission-gated. Only a
permitted responder sees and can trigger the actions.
- Overall risk is moderate and contained to the review and attention
loop.

## Model Used

- Claude, Opus 4.8 (`claude-opus-4-8`), extended thinking, tool use and
code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [ ] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-04 13:54:40 -05:00
DottaandPaperclip f91a6e27c0 feat(issues): contain cross-issue agent side effects (#10837)
## Thinking Path

> - Paperclip is the control plane that coordinates autonomous agent
work.
> - Agents need to collaborate on issues beyond their current
assignment.
> - Cross-issue comments and updates are useful, but an unbounded run
can create cascading side effects.
> - The control plane must preserve company-wide collaboration while
containing each run's influence.
> - Comment attribution must also show the responsible user and the
acting agent in audits.
> - This pull request adds run-bound cross-issue containment,
attribution, and agent-class wake rules.
> - The benefit is safer collaboration without restoring issue-assignee
ownership restrictions.

## Linked Issues or Issue Description

**What existing behavior does this improve?**

Agent-authenticated issue comments, updates, reopen behavior, and
assignee wake routing.

**Subsystem affected**

Cross-cutting: server routes and services, shared contracts, database
schema and migration, and implementation documentation.

**Current behavior**

An authenticated agent can collaborate across company issues, but one
heartbeat run has no per-run side-effect boundary. Comment records also
do not persist the responsible user separately from the acting agent.

**Proposed behavior**

Require a valid heartbeat run for agent cross-issue comments and
updates. Audit each attempt and cap a run at 20 cross-issue effects.
Keep the cap in log-only mode until it automatically changes to
enforcement at 2026-08-11 00:00 UTC. Preserve same-issue writes. Use
agent-class wakes for agent comments. Keep same-run completion comments
from reopening completed work. Record the responsible user on
agent-authored comments and activity.

**Reason and benefit**

Agents can collaborate on other issues without an assignment gate, while
each run has an atomic and inspectable side-effect limit. Operators can
identify both the acting agent and the responsible user.

**Breaking changes**

After 2026-08-11 00:00 UTC, the twenty-first cross-issue comment or
update from one heartbeat run returns a containment error. Agent
cross-issue writes without valid run context are rejected. The migration
is additive and backfills existing agent-authored comment attribution
where the source data is available.

## What Changed

- Added an atomic per-run counter for cross-issue agent comments and
updates.
- Added audit events for allowed and rejected cross-issue effects.
- Added the automatic log-only to enforcement flip at 2026-08-11 00:00
UTC.
- Added responsible-user attribution to agent-authored comments,
activity records, shared types, and validators.
- Added an additive migration and migration coverage for existing
comments.
- Updated reopen, resume, and wake behavior so agent comments create
agent-class wakes and same-run completion comments remain inert.
- Updated the implementation specification and regression coverage.

## Verification

- `pnpm exec vitest run
server/src/__tests__/cross-issue-influence-limit.test.ts
server/src/__tests__/issue-comment-attribution-audit-routes.test.ts
server/src/__tests__/issue-comment-reopen-routes.test.ts
packages/db/src/issue-comment-on-behalf-migration.test.ts` — 97 tests
passed.
- `pnpm -r typecheck` — passed, including migration safety checks.
- `pnpm test:run` — server batch: 3,364 passed and 2 skipped; UI batch:
3,504 passed. One unrelated CLI doctor test warned because this agent
runtime injects static AWS credentials.
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm exec vitest
run cli/src/__tests__/secrets.test.ts` — 8 tests passed and confirmed
the CLI failure was ambient-environment sensitive.
- `pnpm build` — passed.

## Risks

- The fixed enforcement timestamp changes production behavior
automatically on 2026-08-11 00:00 UTC. Audit logs before that time
provide rollout visibility.
- The per-run counter serializes on the heartbeat-run row. This prevents
concurrent attempts from racing past the cap but adds a small lock scope
for cross-issue writes.
- Existing comments can only be backfilled when their acting run or
agent attribution is recoverable.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 in the Codex agent runtime. The runtime did not expose a
context-window size. Reasoning, shell tools, code editing, and test
execution were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-04 13:17:49 -05:00
ded813ad6f feat(interactions): add governed agent addressees (#10252)
## Thinking Path

> - Paperclip is the control plane that lets humans govern companies of
AI agents.
> - Issue-thread interactions are the structured handoff point for
confirmations, questions, suggested tasks, and other governed decisions.
> - Those interactions previously assumed that only board users could
resolve them, preventing one agent from explicitly addressing another
agent for a response.
> - Agent resolution needs company-level governance, auditable resolver
identity, safe terminal-state handling, and attention routing so
authorization is enforced server-side rather than inferred from UI
behavior.
> - This pull request adds governed agent resolution, withdrawal and
terminal expiry semantics, explicit agent addressees, lifecycle
reconciliation, and attention-feed filtering.
> - The benefit is that agents can participate in structured decisions
without weakening board control, company isolation, wake behavior, or
audit invariants.

## Linked Issues or Issue Description

### Subsystem affected

Issue-thread interactions across database, shared contracts, server
authorization/services, adapter callbacks, agent skill guidance, API
docs, and UI governance surfaces.

### Problem or motivation

Structured interactions were board-only, had no explicit agent
addressee, and lacked durable withdrawal/terminal-expiry semantics. That
made peer-agent decisions impossible to authorize and audit safely.

### Proposed solution

Persist requested/effective resolver policy and addressee identity,
enforce company governance and eligible agent resolution, reconcile
addressee lifecycle changes, expose withdrawal and terminal expiry, and
route attention to the intended active agent with board fallback.

### Alternatives considered

Implicitly authorizing the issue assignee or mentioned agents was
rejected as ambiguous and difficult to audit. Using comments alone was
rejected because it loses structured outcomes and continuation behavior.

### Roadmap alignment

Supports the ROADMAP direction for lightweight leadership-agent
communication that still resolves into governed decisions and work
objects.

### Additional context

Public GitHub issue/PR search found no duplicate implementation; open PR
search for interaction resolver governance and agent addressees only
returned this PR.

## What Changed

- Add company-scoped interaction resolver governance contracts and
persistence.
- Add requested/effective resolver policy, resolver identity,
withdrawal, and terminal-expiry behavior.
- Add explicit `addresseeAgentId` validation, authorization,
persistence, lifecycle reconciliation, API documentation, and skill
guidance.
- Route pending addressed interactions to the intended invokable agent
and fall back to board attention when that agent becomes ineligible or
is deleted.
- Preserve sandbox callback identity fields required by governed
resolution paths.
- Add migrations `0193` and `0194` plus route, service, attention,
adapter, CLI, and UI coverage.
- Add governance state and company settings UI, including responsive
mobile behavior and distinct withdrawn/expired audit presentation.

## Verification

- `pnpm check:token-gates` — passed.
- `pnpm -r typecheck` — passed, including migration numbering and safety
checks.
- `pnpm test:run` — feature/server and UI workspace suites passed; one
unrelated CLI AWS doctor test observed injected static AWS credentials
and warned instead of passing.
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm exec vitest
run cli/src/__tests__/secrets.test.ts --project paperclipai` — 8 tests
passed, confirming the failure was environment-sensitive.
- `pnpm build` — passed.
- Latest rebased head `e24cece6be9f1877bdbac7691bcb44fd583c0161`
completed all GitHub CI jobs successfully.

## Risks

- Migrations add interaction and company-governance fields; numbering is
conflict-free on current `master`, additive statements are idempotent,
and migration safety checks pass.
- Agent authorization behavior expands beyond board-only resolution, but
defaults remain board-only and coverage exercises company boundaries,
resolver eligibility, lifecycle invalidation, wake behavior, withdrawal,
expiry, and attention fallback.
- Attention routing depends on current agent invokability;
reconciliation and read-time filtering prevent stale addressees from
retaining visibility or resolution authority.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex using `gpt-5.6-sol` with reasoning, terminal tool use,
code execution, Git/GitHub integration, and Paperclip control-plane
tools. Context-window metadata was not reported by the runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-08-04 12:51:06 -05:00
Devin Foley f0b06d2de9 feat(claude): environment-aware test-environment probe and claude-local CI coverage (#10833)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The claude_local adapter runs Claude Code on sandbox execution
targets, and operators verify an agent's configuration with the
test-environment probe before running it
> - Real runs merge the selected environment's env vars (secret refs
included) under the agent's adapter config env, but the probe built its
config from the adapter config alone — so environment-level auth worked
in runs while the Test button reported missing auth, and a dropped
secret binding passed silently
> - The claude env-test hints also did not recognize
`CLAUDE_CODE_OAUTH_TOKEN` even though the CLI accepts it, and a hello
probe that hit the subscription usage limit reported a hard failure
although authentication worked
> - Separately, the claude-local package test suites were absent from
the CI project list, so two suites drifted broken without notice
> - This pull request makes the probe resolve the same layered env as a
real run, adds the missing auth hint, classifies usage-limit probe
results as a warning, repairs the drifted suites, and turns the
claude-local project on in CI
> - The benefit is a Test button that tells the truth about
environment-level configuration, and a test suite that actually gates
the claude-local adapter

## Linked Issues or Issue Description

No public issue exists; related open PRs: Refs #9488 (recognizes
CLAUDE_CODE_OAUTH_TOKEN in environment checks — overlaps with the
auth-hint portion of this PR via a differently named check; it does not
cover the environment-envVars probe merge, the usage-limit
classification, or the CI coverage), Refs #9933 (live credential
validation in environment checks — complementary, no file-level conflict
with the route change).

The underlying problem, following the enhancement template:

**Current behavior**

The test-environment route builds the probe config from the agent's
adapterConfig only. Real runs merge the selected environment's envVars
under the agent env, so environment-level env vars (including auth such
as `ANTHROPIC_API_KEY` or `CLAUDE_CODE_OAUTH_TOKEN` bound as environment
secrets) work in runs while "Test environment" cannot see them, and a
missing secret binding passes silently. The claude env-test hints do not
recognize `CLAUDE_CODE_OAUTH_TOKEN`. A hello probe that hits the
subscription usage limit reports a hard `claude_hello_probe_failed`. The
claude-local package test suites do not run in CI, and two of them are
stale.

**Proposed behavior**

The probe resolves the selected environment's envVars
(environment-consumer secret bindings included) and merges them under
the agent config env with the run-path precedence; missing bindings
surface as an explicit error check that fails the test. The env-test
emits a `claude_oauth_token_configured` info check when that variable is
set. Usage-limit probe results classify as a
`claude_hello_probe_usage_limited` warning because auth works and only
the usage window is spent. The claude-local suites run in CI. Docs state
the resulting facts.

**Reason and benefit**

The Test button should tell the truth: it previously contradicted run
behavior for environment-level configuration and hid broken secret
bindings. Enabling the package suites in CI prevents further silent
drift — two suites were already broken on master without anyone
noticing.

**Breaking changes**

None. Runs are unchanged. The probe route only adds env layers and
checks; setups without environment envVars behave exactly as before.

## What Changed

- `server/src/routes/agents.ts`: the test-environment route resolves the
selected environment's envVars (forbidden keys stripped,
environment-consumer secret context) and merges them under the agent
adapterConfig env, mirroring `resolveExecutionRunAdapterConfig`
precedence. Missing secret bindings are skipped, reported as an
`environment_env_binding_missing` error check, and fail the test —
matching the `ConfigurationIncompleteFailure` a real dispatch would
raise.
- `packages/adapters/claude-local/src/server/test.ts`: new
`claude_oauth_token_configured` info hint between the API-key warning
and the subscription fallback; hello-probe classification gains a
`claude_hello_probe_usage_limited` warning for provider-quota results
(previously a hard `claude_hello_probe_failed`).
- `scripts/run-vitest-stable.mjs`: add
`@paperclipai/adapter-claude-local` to `nonServerProjects` so CI runs
the package suites.
- `packages/adapters/claude-local/src/server/execute.remote.test.ts`:
assert both runtime asset syncs (skills and mcp-config); the suite
predated the mcp-config asset.
- `packages/adapters/claude-local/src/server/test.probe.test.ts`:
usage-limit fixture now expects the usage-limited warning; new fixture
covers the genuine transient path (529 overloaded); new tests cover the
token hint and API-key precedence.
- `server/src/__tests__/agent-test-environment-routes.test.ts`: new
tests for the env merge (agent wins on conflict, forbidden key
filtered), missing-binding reporting, and the no-execution-target
fallback path.
- `docs/adapters/claude-local.md`, `docs/adapters/overview.md`: state
the auth-input facts (API key or oauth token wins over stored logins;
snapshot-owns-auth applies when neither is configured) and describe the
environment-aware Test behavior.

## Verification

- `npx vitest run --project @paperclipai/adapter-claude-local` — 131
tests pass (both drifted suites repaired; they fail on master today).
- `npx vitest run
server/src/__tests__/agent-test-environment-routes.test.ts` — 7 tests
pass.
- `node --test ./scripts/__tests__/run-vitest-stable-shard.test.mjs` —
passes with the added project.
- `pnpm typecheck` in `server/` and `packages/adapters/claude-local/` —
clean.

## Risks

- Low risk. The run path is untouched; the probe route change is
additive and inert when the environment has no envVars.
- The probe now performs environment-consumer secret resolution at test
time; access is authorized per binding exactly as at run time, and the
audit consumer is the environment (as before for adapter-config
resolution).
- Enabling the claude-local project in CI adds about 2 seconds of vitest
wall time to the general workspaces group and could surface future
regressions in that package — which is the point.

## Model Used

Claude Fable 5 (`claude-fable-5`), extended thinking enabled, agentic
tool use via Claude Code (CLI).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-08-04 10:31:14 -07:00
Devin Foley cb52f0b750 db: env-configurable client options; parallelize attention feed queries (#10795)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The server stores all state in PostgreSQL through Drizzle and the
postgres.js driver
> - Self-hosted installs run Postgres on localhost, so per-query latency
is near zero; hosted installs often attach Postgres over a network,
sometimes through a transaction-mode pooler
> - The DB client passes no options to the driver, so operators cannot
disable prepared statements or tune the pool without a source edit, and
the deploy docs told them to edit `client.ts`
> - The attention feed also runs its related-data lookups one after
another, so its latency grows as queries × network round trip
> - This pull request adds optional environment configuration for the DB
client and batches the independent attention-feed lookups with
`Promise.all`
> - The benefit is that network-attached deployments get correct pooler
support and a much faster attention feed, while self-hosted behavior
does not change

## Linked Issues or Issue Description

No public issue exists for this; description follows the bug report
template:

**What happened?**

On deployments where PostgreSQL is network-attached (managed providers,
pooled endpoints), the attention feed endpoint is slow:
`attentionService.list()` awaits ~15–20 queries strictly in sequence, so
a 70ms round trip turns into more than one second of pure network wait
per call. Separately, connecting through a transaction-mode pooler
(pgbouncer, Supavisor port 6543, Neon `-pooler` hosts) requires
disabling prepared statements, and the only documented way was to
hand-edit `packages/db/src/client.ts` — which `doc/DATABASE.md` itself
tells operators not to do.

**Expected behavior**

The DB client is configurable from the environment (prepared statements,
pool size, timeouts) with driver defaults when unset, and hot read paths
do not multiply network latency by issuing independent queries
sequentially.

**Steps to reproduce**

1. Run the server with `DATABASE_URL` pointing at a Postgres instance
with ~70ms round-trip latency.
2. Open the attention feed (`GET /companies/:companyId/attention`) and
measure response time — it exceeds one second even with little data.
3. Try to connect through a transaction-mode pooler: there is no
supported configuration to disable prepared statements.

## What Changed

- `packages/db/src/client.ts`: `createDb` accepts a
`DatabaseClientOptions` argument and reads optional env config —
`DATABASE_PREPARED_STATEMENTS`, `DATABASE_POOL_MAX`,
`DATABASE_IDLE_TIMEOUT_SECONDS`, `DATABASE_CONNECT_TIMEOUT_SECONDS`.
When nothing is set, no option is passed to the driver and behavior is
identical to the previous bare `postgres(url)`.
- `packages/db/src/client-options.test.ts` (new): env parsing and
driver-option mapping tests, including malformed-value rejection.
- `server/src/services/attention.ts`: the independent related-data
lookups in each feed section now run under `Promise.all` (issue
summary/image/plan-document maps, decision bundle titles, blocked-issue
maps, the newer-runs scan). Section order, item assembly, and query
shapes are unchanged.
- `doc/DATABASE.md` and `docs/deploy/database.md`: the edit-source
pooling instruction is replaced with the env toggle, plus a short
client-tuning reference.

## Verification

- `pnpm --filter @paperclipai/db exec vitest run
src/client-options.test.ts` — 6 tests pass.
- `pnpm --filter server exec vitest run
src/__tests__/attention-service.test.ts` — 22 tests pass.
- `pnpm --filter server exec vitest run
src/__tests__/decisions-service.test.ts
src/__tests__/decision-training.test.ts` — 45 tests pass; this covers
the call path that runs `attentionService.list()` inside
`db.transaction`, where postgres.js serializes queries on the reserved
connection.
- `tsc` reports no errors in the changed files.

## Risks

- Low risk for self-hosted installs: with no env vars set,
`postgres(url, {})` receives an empty options object, which postgres.js
treats the same as no options — driver defaults throughout.
- The `Promise.all` batches only group queries that had no data
dependency on each other; on the transaction call path the driver still
executes them one at a time on the reserved connection, so transactional
semantics are unchanged.
- Malformed env values now fail fast at startup with a clear message
instead of being silently ignored; this is intentional and only affects
operators who set the new variables.

## Model Used

Claude Fable 5 (`claude-fable-5`), Anthropic — via Claude Code CLI,
extended thinking enabled, tool use (test execution, live latency
measurement against a network-attached Postgres to size the problem).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above (searched "prepared statements", "pgbouncer", "pool",
"attention feed", "lockfile" — closest matches are #10573/#10787
lockfile chores, unrelated to this change)
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-08-04 06:30:36 -07:00
Nicky LeachandPaperclip 2ab797dcbe fix(sandbox): reset step store for long-lived bridge work (#10813)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Bridge workers keep startup setup separate from long-lived runtime
work
> - The callback bridge must keep queue-directory setup inside the
startup step
> - The long-lived poll loop must run with no active startup step
> - This pull request keeps that boundary in the right place
> - The benefit is correct span parents and correct runtime exec
metadata

## Linked Issues or Issue Description

**Bug**

**What happened?**
Long-lived bridge continuations kept a stale startup step store during
the queue-directory setup path.

**Expected behavior**
Runtime exec spans should start with no active startup step.

**Steps to reproduce**
1. Start a bridge lane.
2. Let the startup step end.
3. Run later runtime exec work on the same lane.

**Paperclip version or commit**
223068e2ff

**Deployment mode**
Self-hosted server

## What Changed

- Added `runWithoutActiveStep` in
`packages/adapter-utils/src/acpx-engine/startup-timing.ts`.
- Wrapped the long-lived poll timer, socket handlers, and
callback-bridge worker loop in both bridge lanes.
- Added unit tests for store leak and reset behavior.
- Added continuation tests for both bridge lanes and the `criticalPath`
flag.

## Verification

- `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`
- `pnpm exec vitest run
packages/adapter-utils/src/acpx-engine/startup-timing.test.ts`
- `pnpm exec vitest run
server/src/__tests__/environment-execution-target.test.ts`

## Risks

- Low risk.
- The change alters async context handling in bridge continuations.
- If a caller depends on inherited step state, this change removes it.
- The tests cover the intended bridge lanes.

## Model Used

OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 23:55:56 -07:00
Nicky LeachandClaude Sonnet 4.6 bd7a13eb9c fix(daytona): replace bwrap user-namespace with su privilege drop (#10805)
## Thinking Path

> - Paperclip runs AI agents inside Daytona sandbox environments
> - The Daytona plugin wraps agent commands in bwrap to prevent
accidental writes outside the workspace
> - bwrap previously used `--unshare-user --uid <uid> --gid <gid>` to
run commands as the sandbox user inside the container
> - This creates a uid_map of `<uid> 0 1` — inside-uid maps to
outside-uid 0 (root)
> - Files owned by the sandbox user (outside-uid 1001) appear as
overflow uid 65534 (nobody) from inside the namespace
> - So all writes to the workspace fail with Permission denied, and the
agent cannot run
> - This PR replaces the user-namespace approach with `su -s /bin/sh
<user>`, which gives the correct uid mapping
> - The benefit is that bwrap works correctly on Daytona: writes succeed
and the advisory isolation is preserved

## Linked Issues or Issue Description

No existing issue. Describing the bug inline per the bug report
template.

**What happened?**

Running a Codex agent in a Daytona sandbox failed immediately. The agent
could not create directories inside the workspace:

```
mkdir /home/daytona/paperclip-workspace/.paperclip-runtime/codex/paperclip-bridge/queue ... failed with exit code 1:
bwrap: Can't find source path /home/daytona/paperclip-workspace: Permission denied
```

Root cause: bwrap used `--unshare-user --uid 1001 --gid 1001` (via
sudo/root). This writes uid_map `1001 0 1` — inside-uid 1001 maps to
outside-uid 0. Files owned by outside-uid 1001 (the workspace) appear as
overflow uid 65534 (nobody) from inside the namespace. `--bind-try`
suppresses ENOENT but not EACCES, so the bind exits 0 and the wrapper
proceeds — but every write inside then fails with Permission denied.

The bwrap capability probe (`sudo -n bwrap --unshare-user --uid 0 --gid
0 --ro-bind / / -- true`) did not test the workspace bind or the su
invocation, so it incorrectly reported bwrap as available.

**Expected behavior**

The agent should start and run normally inside the Daytona sandbox.
Directory creation and file writes in the workspace should succeed.

**Steps to reproduce**

1. Configure Paperclip with a Daytona sandbox provider
2. Start a Codex agent task targeting a Daytona sandbox
3. Observe the `adapter_failed` error: `mkdir ... failed with exit code
1: bwrap: Can't find source path /home/daytona/paperclip-workspace:
Permission denied`

**Paperclip version or commit**

master (reproducible on current HEAD before this fix)

**Deployment mode**

Self-hosted server

**Agent adapter(s) involved**

- [x] Codex

**Relevant logs or output**

```
mkdir /home/daytona/paperclip-workspace/.paperclip-runtime/codex/paperclip-bridge/queue \
  /home/daytona/paperclip-workspace/.paperclip-runtime/codex/paperclip-bridge/queue/requests \
  /home/daytona/paperclip-workspace/.paperclip-runtime/codex/paperclip-bridge/queue/responses \
  /home/daytona/paperclip-workspace/.paperclip-runtime/codex/paperclip-bridge/queue/logs \
  failed with exit code 1: bwrap: Can't find source path /home/daytona/paperclip-workspace: Permission denied
(adapter_failed)
```

## What Changed

- Replaced `--unshare-user --uid <uid> --gid <gid>` with `su -s /bin/sh
<username>` in `buildBwrapCommand`. bwrap runs as real root (for
bind-mount capability), then `su` drops into the sandbox user. Inside
uid=1001 maps to outside uid=1001, so workspace files are writable.
- Removed `detectSandboxUidGid` (ran `id -u` + `id -g`). Added
`detectSandboxUsername` (runs `id -un`) — the username is what `su`
needs.
- Updated `detectBwrapAvailable` probe to test the actual invocation:
`sudo -n bwrap --ro-bind / / [--bind-try <workspace> <workspace>] -- su
-s /bin/sh '<user>' -c true`. This catches both the su failure mode and
the EACCES-on-workspace-bind case.
- Updated `detectBwrapCapability` to run sequentially (username first,
then probe with that username and remoteCwd).
- Replaced `sandboxUid`/`sandboxGid` in lease metadata with
`sandboxUsername`.
- All three `detectBwrapCapability` call sites now pass `remoteCwd`.
- Updated `BwrapExecPlan` type and `resolveBwrapExecPlan` to use
`username: string` instead of `identity: { uid, gid }`.
- Updated tests TDD-style: rewrote tests to describe the new behavior
first, then implemented to pass them.

## Verification

**SSH verification** (run against a live Daytona sandbox before writing
the fix):

```bash
# Old approach — fails
sudo -n bwrap --unshare-user --uid 1001 --gid 1001 \
  --ro-bind / / --bind-try /home/daytona/paperclip-workspace /home/daytona/paperclip-workspace \
  -- sh -c "mkdir -p /home/daytona/paperclip-workspace/test"
# → mkdir: cannot create directory: Permission denied

# New approach — works
sudo -n bwrap --ro-bind / / \
  --bind-try /home/daytona/paperclip-workspace /home/daytona/paperclip-workspace \
  -- su -s /bin/sh daytona -c "mkdir -p /home/daytona/paperclip-workspace/test && echo ok"
# → ok (files owned by uid 1001)
```

**Unit tests:**

```
cd packages/plugins/sandbox-providers/daytona && npx vitest run
# 114 passed, 2 pre-existing failures (macOS tar compatibility in file-sync.ts, unrelated)
```

## Risks

- `su` must be available in the Daytona sandbox image. It is a standard
POSIX tool present in every image tested. If absent,
`detectBwrapAvailable` returns false and execution falls back to the
unwrapped path (same behavior as before).
- The advisory bwrap wrapper was never a security boundary — it is
best-effort. The behavioral change (root → sandbox user inside the
container) is strictly better: files created by the agent now have the
correct ownership.
- `sandboxUid` and `sandboxGid` are removed from lease metadata. Any
external code reading those fields will get `undefined`. They were only
used internally by `resolveBwrapExecPlan`, which now reads
`sandboxUsername`.

## Model Used

Claude Sonnet 4.6 (`claude-sonnet-4-6`) via Claude Code CLI — tool use
enabled, extended context. The model diagnosed the bug via SSH
inspection, designed the fix, and implemented it TDD-style (tests first,
then implementation).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-08-03 21:17:17 -07:00
DottaandPaperclip 8e7f1c03eb feat(decisions): improve desk triage and queue parity (#10785)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The decisions desk and queue help operators find work that needs a
human decision.
> - The current views use different grouping, sorting, and labels.
> - Repeated confirmation requests can also leave stale pending actions
in the queue.
> - Blocked-work attention can point at an intermediate issue instead of
the terminal blocker.
> - This pull request aligns the server contract and both user
interfaces.
> - The benefit is a smaller, clearer queue that ranks the decisions
with the largest impact.

## Linked Issues or Issue Description

Related PR: #10774

**What existing behavior does this improve?**

The decisions desk and queue currently use different triage rules. They
can show stale repeated confirmations and can rank blocked work by an
intermediate issue.

**Subsystem affected**

This change affects attention aggregation, issue thread interactions,
shared attention contracts, and the decisions user interface.

**Current behavior**

The desk uses a can-wait group that has no clear arrival meaning. The
queue has fewer controls than the desk. Repeated pending confirmations
remain actionable. Blocked-work rows do not always identify the terminal
actionable blocker.

**Proposed behavior**

Group desk items by arrival date, and reserve Decide now for explicit
due dates. Use one toolbar and shelf model on both pages. Supersede
older repeated pending confirmations. Aggregate blocked work under the
terminal actionable blocker and rank it by impact.

**Reason and benefit**

Operators get one consistent triage model. The badge reflects new and
overdue work. High-impact blockers move to the top. Duplicate
confirmation work no longer consumes attention.

**Breaking changes**

The attention summary field `decideNowCount` changes to
`deskBadgeCount`. Consumers must use the new field. Older repeated
confirmation interactions can now finish with the
`superseded_by_newer_request` outcome.

## What Changed

- Supersede older pending confirmation requests for the same issue and
record the mutation in activity history.
- Resolve blocked-work attention to actionable terminal blockers,
suppress live blocker trees, and rank rows by blocked-work impact.
- Group the decisions desk into New today and Earlier, and count new
plus overdue work in the desk badge.
- Share the decision toolbar and shelf components across the desk and
queue.
- Add queue grouping, sorting, filtering, aging, visible training
controls, and clearer recommendation copy.
- Add server, shared-contract, and user-interface tests for the new
behavior.

## Verification

- `pnpm check:token-gates`
- `pnpm -r typecheck`
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm test:run` (all
server, UI, CLI, shared, and catalog tests passed; one fixed five-second
DB timeout flaked under full-suite load)
- `NODE_ENV=test pnpm --filter @paperclipai/db exec vitest run
src/status-card-migrations.test.ts` (passed in isolation)
- `pnpm build`

## Risks

- The attention summary field rename requires synchronized consumers.
- Terminal-blocker traversal uses cycle and depth guards. A malformed
dependency graph can stop at the last safe node.
- The new arrival grouping changes which items contribute to the
decisions badge.
- Superseding repeated confirmations changes the terminal state of older
pending interactions.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex with GPT-5. The runtime did not expose a dated model
snapshot or context-window size. The model used reasoning, repository
tools, code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 21:31:45 -05:00
Nicky LeachandPaperclip 6a69a3d6b0 refactor(observability): stop writing detailed per-step timing to the run log (#10776)
## Thinking Path

> - Paperclip tracks agent work for the team.
> - The startup timing path already emits detailed spans.
> - The run log repeats the same detailed timing.
> - That makes the event larger than it needs to be.
> - This pull request removes the redundant per-step timing fields from
the run-log payload.
> - The benefit is a smaller log with the same detail still available in
traces.

## Linked Issues or Issue Description

No public GitHub issue or open pull request matches this change. I
described the enhancement below.

**What existing behavior does this improve?**
`run.startup.step` event output.

**Subsystem affected**
Cross-cutting (multiple of the above)

**Current behavior**
`run.startup.step` writes `roundTrips`, `providerExecMs`,
`providerGetMs`, `createRuntimeMs`, and `ensureSessionMs`. The same
detail already exists in the spans.

**Proposed behavior**
`run.startup.step` keeps only `step`, `durationMs`, and `outcome`. The
heartbeat lifecycle timestamps stay unchanged.

**Reason and benefit**
This change removes redundant data from the run log. It keeps the useful
detail in trace spans. It also makes the payload smaller and easier to
read. The revert path stays clear because the removed data has one
producer chain.

**Breaking changes**
Yes. Consumers that read the removed fields must switch to span data or
the remaining event fields. The heartbeat lifecycle timestamps do not
change.

**Additional context**
I searched GitHub for related open PRs and issues. I found no match.

## What Changed

- Removed the redundant per-step timing fields from the run-log payload.
- Removed the now-dead producer chain that fed those fields.
- Kept the span-level timing data and the heartbeat lifecycle
timestamps.

## Verification

- `adapter-utils` typecheck clean
- `server` typecheck clean
- `startup-timing` suite: 30 passed
- `adapter-utils` `execute` suite: 99 passed
- `server` `environment-execution-target` suite: 21 passed

## Risks

- Consumers that still read the removed fields will need a code change.
- This is a one-way-door data removal for the run log.

## Model Used

OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs: #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 15:58:21 -07:00
Nicky LeachandPaperclip af6b32d82a feat(observability): add provider OTel spans - cache-hit flag, plugin tracer, Daytona pack/transfer spans (#10764)
## Thinking Path

> - Paperclip uses pull requests to ship control-plane changes with
review and audit.
> - This change extends sandbox provider telemetry.
> - The first PR added startup and exec spans.
> - This PR adds provider spans for cache hits, plugin tracer flow, and
Daytona file sync steps.
> - The host must keep the trust boundary and reject unsafe span data.
> - The result is fuller OTel coverage with bounded labels and safe
parentage.

## Linked Issues or Issue Description

**Problem or motivation**

Sandbox provider telemetry lacks an explicit cache-hit signal, plugin
span context, and file-sync pack and transfer spans.
The current proxy for a cache hit is fragile.
The plugin SDK also needs a safe tracer surface and a per-call parent
context.

**Proposed solution**

Add an explicit `cacheHit` flag from the Daytona sandbox handle lookup.
Expose `ctx.tracer` on the plugin context and pass a `traceparent`
string with each call.
Record provider spans on the host with allowlist clamping and capability
checks.
Wrap Daytona file sync pack and transfer steps in spans.

**Alternatives considered**

Keep the old `providerGetMs == 0` proxy.
Reject that path because the cache-hit decision belongs at the handle
lookup, not in a timing proxy.

The host stays the trust boundary for worker span data.
It clamps labels, rejects bad parent data, and gates the worker-to-host
span RPC by capability.
A security review completed before this PR opened.

## What Changed

- Added an explicit `cacheHit` flag from the Daytona sandbox handle
lookup.
- Added `ctx.tracer` on the plugin context and a `traceparent` field in
the per-call context.
- Added host-side span recording with attribute clamping and capability
checks.
- Wrapped Daytona file sync pack and transfer steps in spans.
- Added tests for the host trust boundary, the plugin tracer no-op path,
and the Daytona span paths.

## Verification

- `pnpm --filter @paperclipai/plugin-daytona exec vitest run`
- `pnpm --filter @paperclipai/plugin-sdk exec vitest run`
- `pnpm --filter @paperclipai/server exec vitest run
plugin-host-services environment-execution-target instrumentation
plugin-worker-manager`
- `tsc --noEmit` for server, plugin-sdk, and adapter-utils

## Risks

- Span data now crosses the worker boundary, so the host allowlist and
capability gate must stay strict.
- The `traceparent` path must stay valid and host-owned.
- Daytona file sync spans must not add new round trips.

## Model Used

OpenAI Codex, GPT-5, tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes:` / `Closes:` /
`Refs:` or described the issue in the PR body
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 13:09:01 -07:00
DottaandPaperclip ba396c608c feat(server): configure shared workspace concurrency (#10759)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The heartbeat service starts agent runs in local, SSH, sandbox,
plugin, or Kubernetes environments.
> - Runs can share one project working tree.
> - PR #10699 made every shared working tree single-file, including
trusted local and SSH hosts that support coordinated concurrent work.
> - Operators need a policy that keeps remote environments safe and
restores local multi-agent work.
> - This pull request adds an `auto`, `serialize`, or `allow`
concurrency policy and applies it to the final execution environment.
> - The benefit is safe serialization by default for sandboxed targets
and useful concurrency by default for persistent local targets.

## Linked Issues or Issue Description

Related work: #10699 introduced the busy gate that this change makes
configurable. #7852 covers a separate environment-lease race and does
not provide this dispatch policy.

**Subsystem affected**

`server/` heartbeat orchestration and `packages/shared/` workspace
policy contracts.

**Problem or motivation**

The shared-workspace busy gate always defers a second run. This behavior
prevents local multi-agent projects from running concurrently even when
operators expect agents to coordinate through commits.

**Proposed solution**

Add `sharedWorkspaceConcurrency` with `auto`, `serialize`, and `allow`
values. Default `auto` permits local and SSH concurrency. It serializes
sandbox, plugin, and forced Kubernetes execution.

**Alternatives considered**

Keeping unconditional serialization is too restrictive for persistent
host working trees. Always allowing overlap removes the protection that
sandboxed and remote targets need.

**Roadmap alignment**

This is a focused correction to the shipped cloud and sandbox execution
milestone. It does not add a new roadmap feature.

## What Changed

- Added the optional tri-state field to project policy and issue
override contracts and validators.
- Added a pure resolver with issue override, project policy, and `auto`
default precedence.
- Moved final environment and Kubernetes resolution before the
shared-workspace busy gate.
- Kept the existing deferral and retry behavior for every path that
resolves to serialization.
- Added a task-context warning and a structured log when a run
dispatches beside a live holder.
- Added policy and heartbeat coverage for all requested policy and
environment combinations.
- Documented the new policy and its default behavior.

## Verification

- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/execution-workspace-policy.test.ts
src/__tests__/heartbeat-workspace-busy.test.ts` — 32 tests passed.
- `pnpm -r typecheck` — passed.
- `PAPERCLIP_IN_WORKTREE=false
PAPERCLIP_DATABASE_RESTORE_IN_PROGRESS=false
PAPERCLIP_RESTORE_IN_PROGRESS=false pnpm test:run` — all 3,528 server
tests passed. The later UI/workspace phase passed 3,384 tests and hit
one unrelated `CompanyEnvironments` navigation timing failure.
- `pnpm --filter @paperclipai/ui exec vitest run
src/pages/CompanyEnvironments.test.tsx -t "opens the edit form on a
standalone page with existing values and closes after save"` — the
unrelated UI test passed in isolation.
- `pnpm build` — passed.

Policy matrix:

| Policy | Final target | Expected result | Result |
| --- | --- | --- | --- |
| `auto` | local | Dispatch with holder note | Passed |
| `auto` | sandbox | Defer with `workspace_busy` | Passed |
| `auto` | instance-forced Kubernetes | Defer with `workspace_busy` |
Passed |
| `serialize` | local | Defer with `workspace_busy` | Passed |
| `allow` | sandbox | Dispatch with holder note | Passed |

Existing serialization, retry, and stale-holder tests also pass.

## Risks

- `auto` changes the post-#10699 local and SSH behavior back to
concurrent dispatch. Concurrent agents can mutate the same working tree,
so each dispatched run receives an explicit coordination warning.
- `allow` is an operator override and can permit overlap in sandbox or
plugin environments.
- Unknown environment drivers serialize in `auto` mode. This keeps the
fallback conservative.
- There is no database migration. An absent field resolves to `auto`.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI GPT-5 (Codex). The exact API snapshot and context-window size are
not exposed to the agent. Reasoning, repository editing, terminal tool
use, and local code execution were enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 14:25:05 -05:00
Nicky LeachandPaperclip c09ea7112b feat(observability): add granular OpenTelemetry spans for sandbox startup and execution (#10758)
## Thinking Path

> - Paperclip coordinates AI agent work and records execution data.
> - The sandbox startup path and the host-to-sandbox execution path need
clearer OpenTelemetry spans.
> - The trace data now shows wait time, critical path data, and bounded
labels.
> - This pull request adds bounded spans and closed attribute helpers
for sandbox startup and execution.
> - The result is better trace data with low cardinality and no secret
leakage.

## Linked Issues or Issue Description

- No public GitHub issue exists for this branch.
- Related PR: #10536
- This PR extends the sandbox OpenTelemetry work with exec spans, root
timing, and bounded labels.

## What Changed

- Added a closed span-attribute contract for sandbox startup data.
- Added a bounded label helper for command and region values.
- Threaded the active step context into the execution path.
- Added a `sandbox.exec` span with true timestamps and bounded
attributes.
- Added skipped-step and root-span timing data with low-cardinality
context.
- Moved handshake sub-times and bridge batch data onto spans.

## Verification

- `pnpm --filter @paperclipai/adapter-utils run typecheck`
- `pnpm --filter @paperclipai/server run typecheck`
- `pnpm --filter @paperclipai/adapter-utils exec vitest run`
- `pnpm --filter @paperclipai/server exec vitest run
environment-execution-target`
- `git log --oneline
origin/master..origin/feat/sandbox-startup-otel-spans`
- `git diff origin/master...origin/feat/sandbox-startup-otel-spans
--stat`

## Risks

- Span attribute rules could still miss a future field if new code skips
the shared helper.
- Low-cardinality labels may hide some detail, but that is the intended
tradeoff.
- Tracing stays fail-open, so a missing tracer still hides data rather
than stopping work.

## Model Used

- OpenAI Codex, GPT-5, tool use enabled. The runtime did not expose the
context window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

The current head still has one failing required check: `e2e`. The PR
stays unready for board handoff until that check passes.

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-03 10:13:19 -07:00
Devin FoleyandPaperclip 185515c97b fix(external-objects): refresh PR status labels (#10704)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - The issue properties panel can show external objects such as GitHub
pull requests.
> - Those objects are resolved by external-object providers and then
displayed as compact status labels.
> - A GitHub pull request could remain in the fallback `unknown` state
and appear as `Not yet resolved`.
> - That label is confusing when the object is known but has not been
refreshed yet.
> - This pull request refreshes due external objects from the heartbeat
scheduler and improves the unknown-status copy.
> - The benefit is a properties panel that moves from pending refresh to
the real pull request state without a manual refresh.

## Linked Issues or Issue Description

No public GitHub issue exists for this bug. I searched for related
public issues and pull requests using the terms `Not yet refreshed`,
`external objects refresh`, and `external PR status`, and did not find a
duplicate implementation.

**What happened?**

The issue properties panel could show a GitHub pull request as `Not yet
resolved` even when the referenced pull request was valid. The object
stayed stale unless a manual refresh path ran.

**Expected behavior**

A known external object should show pending-refresh copy while it waits
for provider data. When the scheduler refreshes it, the properties panel
should show the provider status such as open, merged, or closed.

**Steps to reproduce**

1. Create or view an issue that references a GitHub pull request.
2. Open the issue properties panel.
3. Observe the external object row before a manual refresh has run.

**Paperclip version or commit**

Current `master` before this pull request.

**Deployment mode**

Local dev and self-hosted server.

**Installation method**

Built from source.

**Agent adapter(s) involved**

Not adapter-specific.

**Database mode**

Not database-related.

**Access context**

Board view.

**Privacy checklist**

I reviewed this description and did not include logs, credentials,
private URLs, internal issue IDs, or PII.

## What Changed

- Added a heartbeat scheduler tick that refreshes due external objects
for active companies.
- Kept manual external-object refresh behavior on the same service path.
- Changed display copy so known provider objects use liveness labels
such as `Not yet refreshed`, while fresh unknown provider statuses show
`Status unavailable`.
- Added server and UI tests for scheduled refresh and label behavior.

## Verification

- `corepack pnpm install --frozen-lockfile`
- `pnpm check:token-gates`
- `pnpm exec vitest run
server/src/__tests__/external-objects-service.test.ts
server/src/__tests__/server-startup-feedback-export.test.ts
ui/src/components/ExternalObjectPill.test.tsx
ui/src/components/IssueProperties.test.tsx
ui/src/lib/external-objects.test.ts`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/server build`
- `pnpm --filter @paperclipai/ui build`

- `pnpm run typecheck:build-gaps`
- GitHub PR checks passed on head `0e7fcd30`
- Greptile reported 5/5 on head `0e7fcd30` with no unresolved review
threads

Notes:

- I ran recursive typecheck and build first. Both hit container resource
limits with exit 137 during concurrent package work, so I reran the
affected server and UI targets separately.
- An unrelated workspace-runtime auto-port test fails in this container
with a PID ownership mismatch. It is outside the files changed here.

## Risks

Low to medium risk.

The scheduler does more periodic external-object work, so the main risk
is extra provider refresh load. The implementation bounds the work to
active companies, due non-terminal objects, and 50 objects per company
per tick. The path also stays behind the external-objects experimental
setting.

## Model Used

OpenAI GPT-5 Codex in the Codex execution environment, with shell and
GitHub CLI tool use. The runtime did not expose a more specific internal
model ID or context window.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-02 20:24:52 -07:00
Devin FoleyandCody bd86dbe41b fix(codex-local): detect server-visible Codex credentials in ACP environment test (#10703)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The codex-local adapter runs Codex agents through the ACP lane and
offers a "Test" button on the agent configuration page to validate the
environment
> - The environment test used its own ad-hoc credential probe, while
real dispatch uses the shared `evaluateCodexCredentialReadiness`
predicate in `codex-home.ts`
> - The two paths disagreed: a user with valid Codex subscription auth
in the shared, server-visible Codex home still saw "No Codex ACP
credentials were detected"
> - The old warning also suggested `codex login` without explaining that
a `/login` in a separate Codex or chat session does not authenticate the
Paperclip server process
> - This pull request makes `testCodexAcpEnvironment` use the same
shared readiness predicate as real dispatch and rewords the warning to
name the server credential boundary
> - The benefit is that the Test button now agrees with what dispatch
will actually do, and the warning tells the user exactly which process
needs the credentials

## Linked Issues or Issue Description

No public GitHub issue exists for this bug. Related credential-handling
work, not duplicates: Refs #10160 (classifies OpenAI invalid-key 401s at
dispatch time) and Refs #9598 (classifies Codex refresh auth failures).
Both cover dispatch-time failures; this PR fixes the pre-dispatch
environment test.

Description follows the bug report template:

**What happened?**

A user configured a Codex ACP agent and had already authenticated Codex
(subscription auth present in the shared Codex home visible to the
Paperclip server). Clicking "Test" on the agent configuration page still
reported:

`warn: No Codex ACP credentials were detected. Hint: Set OPENAI_API_KEY
or run codex login before starting a Codex ACP agent.`

**Expected behavior**

The environment test should detect the same credentials that real agent
dispatch would use. When shared managed Codex auth is available, the
test should pass with an informational check instead of warning. When
credentials really are missing, the warning should explain that the
Paperclip server process is the one that needs them.

**Steps to reproduce**

1. Run the Paperclip server as an OS user whose shared Codex home
contains valid subscription `auth.json` (no `OPENAI_API_KEY` in the
adapter env or server env).
2. Configure an agent with the codex-local adapter using the ACP engine.
3. Click "Test" on the agent configuration page.
4. Observe the `codex_acp_credentials_missing` warning even though
dispatch would succeed.

**Agent adapter(s) involved**

Codex

**Additional context**

The confusion was amplified by the hint: users had run `/login` in a
Codex chat session and assumed the server was authenticated. That login
lives in a different process and home directory, so the server never saw
it.

## What Changed

- `testCodexAcpEnvironment`
(packages/adapters/codex-local/src/server/acp.ts) now calls the shared
`evaluateCodexCredentialReadiness` predicate from `codex-home.ts`
instead of a local ad-hoc `hasCodexNativeCredentials` probe, so the Test
button and real dispatch agree.
- An explicit empty `OPENAI_API_KEY` in the adapter config env no longer
falls through to the server environment key.
- An externally managed `CODEX_HOME` override is now reported as its own
informational check (`codex_acp_external_home_configured`).
- The `codex_acp_credentials_missing` warning now says the credentials
must be visible to the Paperclip server, and the hint explains that a
`/login` in a separate Codex or chat session does not authenticate the
server.
- Removed the now-unused `hasCodexNativeCredentials` helper.
- Added two regression tests: shared managed Codex auth is detected (no
false warning), and the missing-credentials warning carries the new
server-boundary wording.

## Verification

- `pnpm --filter @paperclip/adapter-codex-local test --
src/server/acp.test.ts` — the two new tests cover the shared-home
detection branch and the new warning wording; the existing ACP lane
tests cover the API-key and remote-target branches.
- Manual: with subscription auth in the server-visible shared Codex home
and no `OPENAI_API_KEY`, the agent configuration Test now reports
`codex_acp_native_auth_detected` (info) instead of
`codex_acp_credentials_missing` (warn).

## Risks

- Low risk. The change only affects the environment test path, not
dispatch. The readiness predicate is the same one dispatch already uses,
so drift between the two paths is now structurally prevented.
- Behavioral shift: an explicit empty adapter `OPENAI_API_KEY` no longer
silently falls back to the server env key in the test result. This
matches dispatch behavior and is intentional.

## Model Used

- Implementation authored by OpenAI Codex (gpt-5.5) running through the
Codex ACP lane with tool use.
- PR preparation, rebase onto master, and review fix-up by Anthropic
Claude (Claude Code CLI agent, extended thinking, tool use).

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Cody <noreply@paperclip.ing>
2026-08-02 16:55:53 -07:00
DottaandPaperclip 717684ad8f Add project folder browsing to skill imports (#9930)
## Thinking Path

> - Paperclip is the control plane teams use to manage AI agents and
their reusable capabilities.
> - Skills Manager lets operators discover and import skills from
project workspaces.
> - Automatic discovery only surfaces skills in conventional locations,
so valid skills stored elsewhere in a project are invisible.
> - Operators need a safe way to navigate project folders without
exposing paths outside the selected workspace.
> - This pull request adds company-scoped workspace folder browsing and
selection to the project skill import flow.
> - The benefit is that operators can find and import valid skill
folders regardless of repository layout while preserving workspace
boundaries.

## Linked Issues or Issue Description

- **Subsystem affected:** Cross-cutting (`server/`, `ui/`, and
`packages/shared`).
- **Problem or motivation:** Project skill imports rely on conventional
directory discovery, which prevents operators from selecting valid
`SKILL.md` folders stored in atypical locations.
- **Proposed solution:** Add a company-scoped browse endpoint and a
folder browser in the import dialog. The server resolves real paths,
rejects traversal outside the workspace, skips symlinks and high-noise
directories, identifies skill directories/files, and caps listings at
250 entries.
- **Alternatives considered:** Expanding the automatic scan to every
directory would be slower and noisier, while accepting arbitrary
filesystem paths would weaken project/workspace scoping.
- **Roadmap alignment:** This extends the completed “Skills Manager,
Skill Studio & Skills Store” capability in `ROADMAP.md` without
duplicating planned core work.
- **Additional context:** GitHub search found no duplicate or closely
related public issues or pull requests.

## What Changed

- Added shared browse request/result contracts and validation for
project workspace navigation.
- Added a company-scoped API route and service that safely lists local
workspace folders and detects `SKILL.md` entries.
- Added project workspace/folder navigation to the import dialog,
including parent navigation, workspace switching, truncation feedback,
and direct skill selection.
- Added service and route regression tests for browsing, skill
detection, company isolation, and traversal rejection.
- Added shared response schemas and OpenAPI documentation for the browse
endpoint.
- Hardened explicit skill selections with realpath containment so
symlinked directories cannot escape the project workspace.

## Verification

- `pnpm exec vitest run
server/src/__tests__/company-skills-service.test.ts
server/src/__tests__/company-skills.test.ts` — 64 tests passed.
- `pnpm --filter @paperclipai/shared typecheck` — passed.
- `pnpm --filter @paperclipai/server typecheck` — passed.
- `pnpm --filter @paperclipai/ui typecheck` — passed.
- `pnpm exec vitest run server/src/__tests__/openapi-routes.test.ts` — 3
tests passed.
- Focused post-review reruns: `company-skills-service.test.ts` — 45
tests passed; shared/server typechecks passed.
- GitHub latest-head checks — all green after one transient e2e rerun;
no pending or failing checks.
- `pnpm check:token-gates` — all gates clean on the rebased head.

## Risks

- Low-to-moderate risk: this adds a filesystem browsing surface.
Realpath containment checks prevent workspace escape, symlinks are
excluded, remote-managed workspaces are rejected, and directory listings
are capped.
- The browser intentionally hides `.git` and `node_modules`; skills
inside those directories cannot be selected through this flow.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, exact model ID `gpt-5.5`, reasoning-enabled with
terminal/tool use and code execution; runtime context-window size is not
exposed.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
— the execution harness requires preserving the assigned branch name.
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes — no
user-facing docs changes are needed beyond this PR description because
the flow is self-explanatory UI behavior.
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-02 10:55:36 -05:00
0a09e4d975 feat(decisions): add desk workflow and retention (#10672)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Decisions desk shows work that needs a human decision
> - The queue foundation can group and rank decision work
> - Operators also need a focused daily view and a safe way to handle
old work
> - This pull request adds the desk controls, the aging shelf, and
reversible retention
> - It also binds bulk archive decisions to the exact reviewed item set
> - The benefit is a smaller daily queue without lost or orphaned work

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting: server, UI, database, and shared contracts.

**Problem or motivation**

Decision work can grow into one large company list. Operators need quick
queue and date controls. Old items also need a safe retention path that
does not delete work.

**Proposed solution**

Add queue and date controls to the Decisions desk. Compute the aging
shelf on the server. Archive idle items after 90 days unless an operator
keeps them. Keep archived items searchable and revivable. Notify origin
agents in one batch per sweep. Bind bulk archive proposals to a signed,
exact item manifest.

**Alternatives considered**

Client-only aging can drift across browsers and source kinds. Deleting
old rows removes audit and recovery paths. An unsigned dynamic bulk
query can archive items that the reviewer did not inspect.

**Roadmap alignment**

This work supports the Work Queues and decision-memory directions in
`ROADMAP.md`. It extends the Decisions and attention-feed foundation
from #10651. Related earlier work includes #9380, #10010, and #10474.

## What Changed

- Added the queue rail, date chips, decide split, triage strip, queue
page, and aging shelf UI.
- Added server-owned shelf state with per-queue retention overrides.
- Added reversible retention state, archive history, and an idempotent
notification outbox.
- Added the 90-day archive sweeper, Keep exemption, archived feed query,
and revive actions.
- Added one origin-agent notification per agent and sweep.
- Added signed bulk archive proposals with exact-set and version checks.
- Persisted queue-exclusion reasons atomically and kept cross-domain
source resolution per-item until it has an exact-set transaction
contract.
- Added API contracts, OpenAPI entries, migration coverage, focused
tests, and Storybook screens.

## Verification

- `pnpm -r typecheck`
- `pnpm test:run` (server: 329 files and 3,453 tests passed; UI: 408
files and 3,362 tests passed)
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm exec vitest
run cli/src/__tests__/secrets.test.ts`
- `pnpm build`
- `pnpm check:token-gates`
- Focused retention, attention, decisions, migration replay, startup,
and UI API tests.
- Complete queue snapshot regression with 51 items across the normal
50-item page boundary.

The unmodified CLI test reports one warning assertion in this runtime
because the harness injects static AWS credential variables. The
isolated test passes when those two variables are removed.

## Risks

- The migration adds retention and notification outbox tables. It uses
idempotent table, index, and foreign-key creation.
- Retention runs on the heartbeat scheduler interval. Compare-and-set
version checks prevent stale archive writes.
- Bulk archive acceptance fails closed when authority, activity,
version, or the reviewed set changes.
- Archive is reversible and does not delete source records.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

OpenAI Codex with `gpt-5.6-sol`. The model used tool calls, code
execution, database migration generation, and test execution. The
context-window size is not exposed in this runtime.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-02 10:47:03 -05:00
dcac49a4fd feat(workspaces): defer isolated setup until runtime start (#10653)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Isolated workspaces give each task a safe and reproducible checkout.
> - The existing setup cloned the development database before an agent
needed to run the app.
> - This made worktree creation slower and heavier for tasks that never
start a service.
> - Runtime services already use one server start path for heartbeat,
operator, and startup recovery flows.
> - This pull request moves heavy setup to that start path and keeps
worktree creation lean.
> - The benefit is faster isolated workspace creation with the same
reliable runtime setup when a service starts.

## Linked Issues or Issue Description

Related pull request: #10652 covers the initial deferred
database-seeding slice. This pull request supersedes it with end-to-end
runtime provisioning and safe cleanup.

**What existing behavior does this improve?**

This improves isolated worktree creation, runtime service startup, and
isolated instance cleanup.

**Subsystem affected**

Cross-cutting: CLI worktree setup, server runtime orchestration, shared
workspace contracts, and development scripts.

**Current behavior**

Paperclip seeds an isolated development database during worktree
creation. It can also leave an isolated instance directory after
workspace teardown. This work happens even when no runtime service
starts.

**Proposed behavior**

Paperclip creates the worktree with a lean eager setup. It runs an
idempotent runtime provision command before the first managed service
spawn. Concurrent starts share one provision attempt. Teardown removes
the isolated instance safely.

**Reason and benefit**

Many agent tasks only edit and test code. They do not need a running
Paperclip instance. Deferring the database seed reduces workspace
startup cost while preserving automatic setup for tasks that start the
app.

**Breaking changes**

None. The new runtime provision command is optional. Existing workspace
behavior is unchanged when it is absent.

## What Changed

- Split Paperclip worktree setup into a lean eager script and an
idempotent runtime provision script.
- Added `runtimeProvisionCommand` to project, issue, realized workspace,
and persisted workspace contracts.
- Added a per-workspace provision mutex before local service spawn for
heartbeat, operator, and startup recovery flows.
- Added a persisted `provisioning` service state and the
`workspace_runtime_provision` operation phase.
- Kept provision time outside the service readiness timeout and made
failed attempts visible and retryable.
- Reclaimed isolated instance data during safe workspace teardown.
- Serialized deferred database seeding across processes and bound
teardown to the instance root captured in persisted workspace metadata.
- Added tests for config flow, concurrency, retry, no-op behavior,
readiness timing, scripts, CLI commands, and cleanup.
- Documented the eager and runtime provisioning contracts.

## Verification

- `pnpm -r typecheck`
- `pnpm build`
- `pnpm test:run` (server: 3,201 passed; UI: 3,345 passed; the CLI phase
exposed one environment-sensitive AWS doctor assertion because the agent
runtime injects static AWS credentials)
- `env -u AWS_ACCESS_KEY_ID -u AWS_SECRET_ACCESS_KEY pnpm exec vitest
run cli/src/__tests__/secrets.test.ts -t 'passes AWS doctor checks when
non-secret provider config is present'`
- Focused runtime tests cover serialized provisioning, retry after
stderr failure, absent-command no-op behavior, operation logging,
persisted state order, and readiness timeout exclusion.
- Focused CLI and cleanup tests cover concurrent seed serialization,
stale-lock fail-closed behavior, persisted instance ownership, and
rewritten sibling pointers.

## Risks

- A faulty runtime provision script blocks service startup. Paperclip
records stderr, marks the service failed, and retries on the next start.
- Concurrent service requests share an in-process provision attempt,
while the seed command uses an atomic filesystem lock across processes.
A stale lock fails closed and requires an operator to verify no seed is
running before removing it.
- Isolated instance cleanup is destructive. The cleanup service
validates ownership and path containment before removal.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, `gpt-5.6-sol`, with agentic reasoning, tool use, and
code execution. The service does not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-08-02 10:37:10 -05:00
DottaandPaperclip 30c49c8327 feat(decisions): add queues and prioritized attention feed (#10651)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source control plane for companies of AI
agents.
> - Operators use the attention feed to find decisions that need action.
> - The feed has eleven source kinds, but it has no durable queue or
triage state.
> - The feed also returns every item and lacks decision deadlines,
snooze state, and decision-focused ordering.
> - This pull request adds secure queue sidecars and enriches the
attention feed with triage data, filters, cursor pagination, and
decide-now ranking.
> - The benefit is a bounded feed that can show the most urgent
decisions first without weakening source visibility rules.

## Linked Issues or Issue Description

This pull request replaces the closed
[#10634](https://github.com/paperclipai/paperclip/pull/10634). It
combines that queue foundation with the dependent attention-feed change
as one review unit.

**Subsystem affected**

Database schema, shared contracts, server authorization and REST APIs,
and the UI attention client library.

**Problem or motivation**

The attention feed can contain hundreds of mixed decision items.
Operators cannot group them into durable queues, set a decision
deadline, snooze an item, or request a bounded page ordered by urgency.
The current client must download the full feed on each refresh.

**Proposed solution**

Store queue membership and triage state by stable attention identity.
Re-authorize each source during queue reads and writes. Enrich attention
items with queue, deadline, snooze, expiry, rule, and origin data. Add
activity and queue filters, opaque cursor pagination, decide-focused
ordering, and a decide-now count.

**Alternatives considered**

Adding queue fields to every source would duplicate schema and
authorization logic across eleven source kinds. Client-only filtering
and sorting would still transfer the full feed and would make pagination
unstable.

**Roadmap alignment**

This change improves the core decision-attention surface and operator
oversight. It does not implement the separate general-purpose work queue
milestone in `ROADMAP.md`.

## What Changed

- Added company-scoped queue, membership, triage, and append-only event
tables with actor and run provenance.
- Added queue CRUD, item membership, starter-rule discovery, and
decide-by and snooze endpoints.
- Kept source authorization on each queue mutation, read, and count.
- Added attention fields for expiry, rule, origin agent, queues,
decide-by attribution, and snooze state.
- Added activity date filters, queue filters, opaque cursor pagination,
and configurable page limits.
- Added decide-now ordering by deadline, expiry, severity, and activity.
- Added `decideNowCount` and excluded actively snoozed items from the
default feed.
- Updated the shared and UI client contracts.
- Added focused server, route, OpenAPI, and UI client tests.

## Verification

- `pnpm exec vitest run server/src/__tests__/attention-service.test.ts
server/src/__tests__/decision-queues-routes.test.ts
server/src/__tests__/openapi-routes.test.ts ui/src/api/attention.test.ts
ui/src/lib/attention.test.ts` (72 tests passed)
- `pnpm --filter @paperclipai/db check:migrations`
- `pnpm -r --filter @paperclipai/db --filter @paperclipai/shared
--filter @paperclipai/server --filter @paperclipai/ui typecheck`
- `git diff --check origin/master...HEAD`

## Risks

- The migration adds four company-scoped tables and provenance foreign
keys. Migration numbering and safety checks pass.
- Attention reads can lazily create starter queues and memberships.
Inserts are idempotent, audited, and transactional.
- Cursor validity depends on the filtered feed. The API returns a clear
validation error when the cursor item no longer exists in that feed.
- Queue reads re-check source visibility. This favors correct
authorization over fewer queries.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex, model `gpt-5`. The runtime used agentic reasoning,
repository tools, code execution, and test execution. The runtime did
not expose the context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-01 20:37:39 -05:00
Devin Foley 3dec88ce90 feat(agents): warn when an agent's escalation path routes to a paused manager (#10657)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents escalate work up the org chart (`reports_to`), and operators
pause agents — notably, instance imports pause every agent by default
> - A paused manager does not invalidate the chain (subordinates stay
invokable), so nothing surfaces when an operator unpauses workers but
leaves their manager paused
> - Escalations then dead-letter silently: agent-created issues assigned
to the paused manager sit in a queue nothing will ever run
> - This pull request computes paused ancestors in the existing
org-chain health model and surfaces a non-blocking warning on the agent
read models and detail page
> - The benefit is that the operator learns their escalation paths are
dead before work vanishes into them

## Linked Issues or Issue Description

Fixes #10647 (companion to #10648, which refuses agent-initiated
assignment to paused agents at write time — this PR makes the standing
hazard visible)

## What Changed

- `AgentOrgChainHealth` gains two additive, optional fields:
`pausedAncestors` (paused agents in the `reports_to` chain) and
`escalationWarning` (human-readable, only set when the agent itself can
work — a paused/terminated agent's escalation path is moot). Chain
validity, invokability, and assignability are byte-identical.
- No server route changes needed: the fields flow through every existing
agent read model (list, detail, org chart) since they ride the same
`getAgentWorkEligibility` computation.
- Agent detail page shows an amber "Escalation path is paused" banner
(same visual language as the invalid-chain banner, but non-blocking)
with the warning text naming the paused manager and the two remedies.

## Verification

- `pnpm vitest run packages/shared/src/agent-eligibility.test.ts` — 5
new cases: paused direct manager warns; paused grandparent through a
healthy manager warns; the agent itself paused → no warning (but
ancestors still reported); fully active chain → no warning, empty list;
terminated ancestor keeps the invalid-chain classification without
double-counting as paused.
- Full `@paperclipai/shared` suite (392 tests) and
`agent-eligibility-routes` (54) unchanged.
- `tsc --noEmit` in shared, server, and ui.

## Risks

- Low. Purely additive fields plus one UI banner; no behavior gates on
the new data.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — extended
thinking, agentic tool use. No other models involved.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-08-01 17:42:42 -07:00
Devin Foley 27f8c8dbcf feat(server): cap agent review rounds and escalate exhausted reviews to the responsible human (#10650)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Execution policies let one agent implement and another review,
cycling through changes-requested → addressed rounds
> - Nothing bounds that cycle: no round counter, no escalation, no
termination signal — two agents can ping-pong indefinitely, especially
when the review's success criteria drift to something the implementer
cannot satisfy
> - On a real multi-agent instance this produced 6+ unattended rounds
(~8 runs) that continued even after the human had merged the PR under
review
> - This pull request counts consecutive agent-initiated
changes-requested rounds and, at a configurable cap, hands the
still-pending review to the responsible human instead of bouncing back
to the implementer
> - The benefit is that unattended review loops terminate in a human
decision instead of burning runs forever

## Linked Issues or Issue Description

Fixes #10643

## What Changed

- `IssueExecutionState.changesRequestedCount` (schema + type, default
0): consecutive agent-initiated changes-requested rounds on the current
stage. Carries through executor resubmissions, resets to 0 on approval,
and resets when a **human** makes the changes-requested decision — the
cap targets unattended agent↔agent ping-pong, never human review.
- `IssueExecutionPolicy.maxReviewRounds` (optional, 1–50, default null →
server default `DEFAULT_MAX_REVIEW_ROUNDS = 3`).
- At the cap, the transition records the reviewer's changes-requested
decision as usual but keeps the stage **pending** with the responsible
human (`responsibleUserId`, falling back to `createdByUserId`) as the
participant: the issue is assigned to that human and the pending review
surfaces through the existing attention/review UI. The human then
approves, requests changes (resetting the counter and handing back to
the implementer), or re-scopes.
- The escalated hold is sticky: transitions from anyone other than the
escalated human no longer re-select a configured agent participant for
the stage (which would have silently undone the escalation on the next
unrelated PATCH). The escalated human's own decisions flow through the
normal participant decision branch.
- Issues with no responsible human keep today's hand-back behavior; the
counter still accumulates so operators can see the churn.

## Verification

- `pnpm vitest run server/src/__tests__/issue-execution-policy.test.ts`
— 8 new cases: round counting on hand-back, count carried through
resubmission, escalation at the default cap, sticky hold across
unrelated transitions, human changes-requested resets the counter, human
approval completes the stage, no-responsible-human fallback, and a
`maxReviewRounds: 1` policy override.
- `pnpm vitest run
server/src/__tests__/issue-execution-policy-routes.test.ts` and the full
`@paperclipai/shared` suite (387 tests) — schema additions are backward
compatible (both fields optional with defaults; persisted states without
the counter parse as 0).
- `pnpm --filter @paperclipai/shared exec tsc --noEmit` and `cd server
&& pnpm run typecheck`.

## Risks

- Behavior change: an agent-only review loop that previously ran forever
now escalates to a human after 3 agent rounds by default. Instances that
want longer loops can set `maxReviewRounds` per policy. Flows where a
human participates are unaffected (human decisions reset the counter).
- Escalation requires a `responsibleUserId`/`createdByUserId` on the
issue; without one, behavior is unchanged.
- Persisted execution states from before this change parse with
`changesRequestedCount: 0` — no migration needed.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — extended
thinking, agentic tool use. No other models involved.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-08-01 15:04:56 -07:00
DottaandPaperclip ee851fc364 feat(heartbeat): expose cache-adjusted run cost (#10349)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The heartbeat service is the control plane that runs agents through
adapters and records each run's usage and cost in the finance/cost
ledger
> - Adapters report a provider cost (`costUsd`), but there is no way to
represent the provider-billed cost *after* prompt-cache discounts, so
cache-heavy runs are priced wrong and some paid runs end up exported
with a zero/null cost
> - A benchmark comparing Paperclip-orchestrated runs against direct
harness invocation of the same tasks measured 1.5–3.1× higher apparent
USD per pair, largely because cache-discounted billing was not
represented in the exported cost data
> - This pull request adds an optional `cacheAdjustedCostUsd` field to
`AdapterExecutionResult` and a `resolveCacheAdjustedCostUsd` helper in
the heartbeat service that prefers the explicit cache-adjusted figure
and falls back to the reported `costUsd`, persisting it into the run's
usage/ledger JSON
> - The benefit is that paid runs are no longer exported as zero/null
cost and cache-heavy runs can be priced correctly, so operators
comparing orchestrated vs. direct costs see real numbers

## Linked Issues or Issue Description

No single existing public issue covers this exactly; closely related
cost-reporting issues:

- Refs #8947 — hermes adapter never reports usage/cost to Paperclip, so
budget limits never trigger
- Refs #6716 — hermes_local cost/usage capture returns zero
- Refs #3320 — expose per-run token counts in activity log and dashboard

**Problem (feature-request form):** Adapters can only report a single
`costUsd`. Providers with prompt caching bill less than the nominal
token cost, and the heartbeat cost accounting has no field for the
cache-adjusted billed amount. As a result, cache-heavy paid runs are
either priced at the undiscounted figure or, when the adapter withholds
the ambiguous number, exported as zero/null. **Proposed solution:** an
explicit optional `cacheAdjustedCostUsd` on the adapter execution
result, resolved server-side with a safe fallback to `costUsd`.
**Alternatives considered:** recomputing cache discounts server-side
from token counts (rejected: provider pricing tables drift and cache
billing rules are provider-specific; the adapter is the source of
truth).

## What Changed

- `packages/adapter-utils/src/types.ts`: added optional
`cacheAdjustedCostUsd?: number | null` to `AdapterExecutionResult`, with
a doc comment on adapter expectations
- `server/src/services/heartbeat.ts`: added exported
`resolveCacheAdjustedCostUsd()` (explicit cache-adjusted value wins when
a finite non-negative number; otherwise falls back to a finite
non-negative `costUsd`; otherwise `null`), and consistently uses the
resolved billed value for ledger cents, cost status, and run usage JSON
- `server/src/__tests__/heartbeat-cost-accounting.test.ts`: added unit
coverage for explicit precedence, fallback, invalid values,
adjusted-only pricing, and discounted ledger billing

## Verification

- `pnpm exec vitest run
server/src/__tests__/heartbeat-cost-accounting.test.ts` — 1 file, 7
tests passed
- `pnpm --filter @paperclipai/adapter-utils typecheck` — passed
- `pnpm --filter @paperclipai/server typecheck` — passed
- GitHub Actions on head `dc9c3830bf694b9afb3b27c5c8c36bff38e7fdcb` —
all 26 checks clean/skipped; one unrelated E2E checkout-contention flake
passed on its single failed-job rerun
- Greptile review on the same head — 5/5 with zero unresolved threads

## Risks

- Low risk: the field is optional and additive; when absent, behavior
falls back to the existing `costUsd` path
- Ledger/usage JSON gains a new optional `cacheAdjustedCostUsd` key —
consumers that strictly validate keys would need to tolerate it (usage
JSON is already open-shaped)
- No migrations, no API-breaking changes

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Implementation: Anthropic Claude Fable 5, model ID `claude-fable-5`,
standard context window, agentic coding mode with shell/file tool use
- PR preparation and verification: OpenAI Codex on GPT-5 (the runtime
did not expose a more specific serving snapshot or context-window
value), reasoning mode with shell and GitHub tool use

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes (doc
comment on the new field; no user-facing docs affected)
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-08-01 07:15:52 -07:00
scotttongandClaude Fable 5 c185e64b77 feat(ui): chat-style task view behind an experimental flag (#10606)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Operators spend most of their time on the issue detail page. They
talk to the assigned agent there through comments.
> - The current page reads as a ticket form. The thread sits below
properties, the composer sits mid-page, and live agent activity renders
as dense transcript logs.
> - Talking to an agent is a conversation. A chat-first layout matches
that mental model better than a ticket form.
> - A layout change this large must not disrupt current users. It needs
a safe opt-in path and full parity with the existing thread features.
> - This pull request adds a chat-style task view behind a new
"Chat-Style Tasks" experiment toggle. The flag is off by default and the
existing page is unchanged when it is off.
> - The benefit is a focused, readable conversation with the agent: live
tool activity folds into compact summaries, the composer stays at the
bottom, and properties, plan, and artifacts move into header tabs.

## Linked Issues or Issue Description

Refs #49 (chat with agents is a much-wanted feature).

Related PRs found in the dedup search:
- #4489 — an earlier, closed attempt to promote the conversation to the
primary surface on issue detail. This PR is a fresh, flag-gated take on
the same goal.
- #8837 — an open PR that proposes a two-column task layout. It
restructures the same page but keeps the ticket paradigm; this PR is
orthogonal because it is opt-in and chat-first.

**Subsystem affected**

UI (issue detail page).

**Problem or motivation**

The issue detail page presents agent conversations as a ticket:
properties first, thread below, composer in the middle of the page, and
raw transcript noise during live runs. Users who mainly converse with
their agents must scroll past chrome to follow the conversation, and
live activity is hard to read.

**Proposed solution**

An opt-in chat-style view of the issue detail page, gated by a new
"Chat-Style Tasks" experiment toggle in Settings → Experimental. With
the flag on, the thread fills the center pane, the composer docks to the
bottom of the viewport, Properties / Plan / Artifacts become header
tabs, live turns show a status pill with the current tool action and
elapsed time, and settled turns collapse to a "Worked · N tools" summary
that expands into per-tool rows. With the flag off, nothing changes.

**Alternatives considered**

Restyling the existing layout in place (rejected: too disruptive without
an opt-out), and a separate chat page beside the issue page (rejected:
splits the task's single source of truth). A per-request lab page
(`/task-chat-lab`, dev-only) was kept for design iteration instead.

**Roadmap alignment**

ROADMAP.md "CEO Chat" wants lighter conversations that still resolve to
real work objects. This PR keeps the core task-and-comments model — it
only changes presentation, opt-in — so it does not duplicate that
planned work.

## What Changed

- New `enableTaskChatRedesign` instance setting, exposed as a
"Chat-Style Tasks" experiment card in Settings → Experimental (shared
feature catalog, validators, server instance-settings service, and UI
settings page).
- New `ui/src/components/task-chat/` component family: chat thread with
turn grouping, agent reply bubbles, live status pill, collapsible turn
summaries with per-tool rows, plan tab with a sticky CTA action bar,
inline interaction cards, per-request mode chips, and a bottom-docked
composer.
- A shared tool taxonomy (`tool-taxonomy.ts`) maps tool names to verbs
and icons; the status pill, tool rows, and the classic transcript view
all use it.
- A transcript adapter converts stored run logs into chat turns; it
dedupes tool-call updates by `toolUseId` so tool counts match the
expanded rows, and it keeps a tool row's first real name when later
generic updates arrive.
- Composer: posts on Cmd/Ctrl+Enter, supports image paste with
object-URL thumbnail previews (revoked on clear/unmount), and uploads
through the issue attachments route.
- `IssueDetail.tsx`: with the flag on, pane tabs move to the header bar,
the header is not sticky, and the chat fills the center; with the flag
off, the previous layout renders unchanged.
- Motion tokens for the new animations live in `ui/src/index.css` with a
`motion-tokens.ts` catalog and a test that keeps the two in sync (the
catalog now also covers the shared enter/exit/swap tokens that the
decision/quicklook block declares).
- A dev-only `/task-chat-lab` page with fixtures and a tweak panel for
motion tuning.

## Verification

- `pnpm typecheck` — clean across the workspace.
- `pnpm check:token-gates` — 3/3 CLEAN.
- `cd ui && pnpm vitest run` — 3,344 of 3,345 tests pass locally. The
one failure is `IssueProperties.test.tsx` monitor-row time formatting,
which is timezone-sensitive: it also fails on unmodified `origin/master`
in a non-UTC timezone and passes with `TZ=UTC`. It is not related to
this change.
- `cd server && pnpm vitest run
src/__tests__/instance-settings-service.test.ts` — 21/21 pass (covers
the new setting).
- Manual: start the dev server, open Settings → Experimental, enable
"Chat-Style Tasks", and open any issue. The thread fills the page, the
composer docks to the bottom, and Properties / Plan / Artifacts appear
as header tabs. Assign an agent and comment to watch a live run: the
status pill shows the current tool action with elapsed time, and the
finished turn folds into a "Worked · N tools" summary. Disable the
toggle and confirm the classic page is unchanged.
- Visual snapshot baselines are intentionally not updated: per
`doc/design/DECISION-SHEET.md`, "Per-change snapshot verification
demoted to dormant (Jul 13 2026)".

## Risks

- The flag-off path goes through the same `IssueDetail.tsx` file, so a
regression there would affect current users. Mitigation: the classic
markup renders through the same components as before behind explicit
flag conditionals, and the full UI suite passes.
- The transcript adapter interprets stored run-log formats, including
legacy entries without `toolUseId`. Malformed logs degrade to generic
tool rows rather than crashing.
- The new view changes no server behavior other than one additive
instance setting; it is additive and default-off. Overall risk with the
flag off is low.

## Model Used

- Claude (Anthropic), model id `claude-fable-5` (Claude Fable 5),
extended thinking enabled, agentic tool use (file editing, shell, test
execution) via Claude Code / Claude Agent SDK.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

🤖 Generated with [Claude Code](https://claude.com/claude-code)

---------

Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-08-01 02:26:47 -07:00
Devin Foley 6401f4f78c fix(sandbox): bundle git copy-back against the merge-base so diverged/reset workspaces still import (#10601)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - An agent that runs in a sandbox has its workspace copied back to the
host when the run ends, so its work persists — the copy-back ships a git
bundle of the sandbox's commits
> - The bundle is created as a thin delta, `git bundle create HEAD --not
<baseSha>`, which records `baseSha` (the host workspace HEAD captured at
export) as a prerequisite the host must already hold
> - That assumption breaks when the sandbox HEAD has diverged from
`baseSha`, or when a shared host workspace no longer holds `baseSha` at
import time — then `git fetch` on the host hard-fails and the entire run
is lost even though the agent finished its work
> - This pull request bundles against the merge-base of `baseSha` and
the sandbox HEAD (with a full-bundle fallback), which the host can
satisfy in those cases
> - The benefit is that copy-back no longer discards a completed run's
work over a base the host can't reconcile

## Linked Issues or Issue Description

**What happened?**

A sandbox agent run completed its work, then failed during workspace
finalize:

```
git -C <host workspace> fetch --force <git-delta.bundle> refs/…/export:refs/…/imported
error: Could not read <baseSha>
fatal: revision walk setup failed
error: git-delta.bundle did not send all necessary objects
```

The run is reported as `adapter_failed` even though the agent produced
output. The copy-back bundle names the host workspace's recorded HEAD
(`baseSha`) as a prerequisite, but the host cannot satisfy it.

**Steps to reproduce**

Two independent triggers, both reproduced in tests:
1. The sandbox's HEAD has diverged from `baseSha` — e.g. the sandbox
carries a local-only branch that forked from an older commit than the
host's current HEAD.
2. The shared host workspace no longer holds `baseSha` at import time
(it was reset / re-realized between export and import).

In either case `git fetch` of the thin bundle fails with a missing
prerequisite.

**Expected behavior**

Copy-back imports the sandbox's work as long as the host holds any
common ancestor, instead of hard-failing and discarding the run.

**Paperclip version**

Current `master`.

**Deployment mode**

Any deployment running agents in sandbox environments with workspace
sync (notably shared-workspace clones and custom images that carry a
local-ahead branch).

## What Changed

- `buildRemoteGitDeltaBundleScript` now computes `bundle_base = git
merge-base <baseSha> HEAD` and bundles `HEAD --not <bundle_base>`. The
merge-base is an ancestor of `baseSha`, so any host that holds `baseSha`
(or an ancestor of it — e.g. after a reset) can satisfy the
prerequisite, and the bundle stays a delta rather than a full-history
transfer.
- When `baseSha` is absent from the sandbox, or no merge-base exists, it
falls back to a full, self-contained bundle (no prerequisites) so the
import can always complete.
- The existing empty-bundle no-op (no new commits) and the ordinary
fast-forward path are unchanged; the `cat-file` base check no longer
aborts the script under `set -e`.

## Verification

- `pnpm vitest run packages/adapter-utils/src/git-workspace-sync.test.ts
packages/adapter-utils/src/sandbox-managed-runtime.test.ts` — new cases:
a diverged sandbox HEAD imports when the host holds only the merge-base
(not `baseSha`), and the full-bundle fallback imports into a host that
shares no history; existing thin-delta and empty-bundle cases still
pass.
- `pnpm --filter @paperclipai/adapter-utils exec tsc --noEmit`.
- Standalone shell repro confirmed the old thin bundle fails with
"Repository lacks these prerequisite commits" in both trigger cases, and
the merge-base bundle imports successfully.

## Risks

- Low. For the common case (sandbox HEAD descends from `baseSha`) the
merge-base is `baseSha`, so the bundle is byte-for-byte the same delta
as before. The change only alters behavior when the old code would have
hard-failed.
- This makes the copy-back import succeed on a diverged base; the
subsequent reconciliation of divergent histories
(`integrateImportedGitHead`) is unchanged and still owns how the
imported head is merged into the host branch. Where a workspace's
history has genuinely diverged (e.g. a stale custom image carrying a
local-only branch), a clean re-clone/re-capture is still the right
operational fix — this change prevents work loss, it does not reconcile
intentional divergence.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — extended
thinking, agentic tool use (file edits, shell repro, vitest/tsc runs).
No other models involved.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-31 23:41:42 -07:00
Devin Foley ee9d907d01 fix(codex): do not inject a duplicate --skip-git-repo-check for sandbox runs (#10595)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - A Codex agent runs `codex exec`, and the adapter assembles its
argument vector from the agent's config plus execution-context options
> - For sandbox execution the adapter injects `--skip-git-repo-check`,
because a headless remote workspace has no git trust prompt to answer
> - The adapter also appends the operator's `extraArgs` verbatim, so an
agent that already lists `--skip-git-repo-check` in its config gets the
flag twice on a sandbox run
> - `codex exec` rejects a repeated `--skip-git-repo-check` and exits
with code 2, which the adapter surfaces as `adapter_failed` before any
work runs
> - This pull request skips the sandbox injection when the operator's
args already carry the flag
> - The benefit is that a common, harmless-looking config no longer
crashes every sandbox run

## Linked Issues or Issue Description

**What happened?**

A `codex_local` agent configured with `extraArgs:
["--skip-git-repo-check"]` fails on every sandbox run:

```
error: the argument '--skip-git-repo-check' cannot be used multiple times

Usage: codex exec [OPTIONS] [PROMPT]
```

The adapter reports `stopReason: "adapter_failed"` (Codex exited with
code 2). The flag appears twice in the argv: once injected by the
adapter for sandbox execution, once from the operator's `extraArgs`.

**Steps to reproduce**

1. Configure a `codex_local` agent with `extraArgs:
["--skip-git-repo-check"]` (or the legacy `args` field).
2. Point it at a sandbox environment.
3. Start a run — `codex exec` aborts immediately on the duplicate flag.

**Expected behavior**

The run launches with a single `--skip-git-repo-check`. An operator
listing the flag the adapter already injects should be a no-op, not a
hard failure.

**Paperclip version**

Current `master`.

**Deployment mode**

Any deployment running Codex agents in sandbox environments.

## What Changed

- `buildCodexExecArgs` no longer pushes the sandbox
`--skip-git-repo-check` when the resolved args (`extraArgs`, or the
legacy `args` fallback) already contain it. The operator's copy stands;
the argv carries the flag exactly once. Non-sandbox runs and configs
without the flag are unchanged.

## Verification

- `cd packages/adapters/codex-local && pnpm vitest run
src/server/codex-args.test.ts` — new cases: `extraArgs` already carrying
the flag (single occurrence), the legacy `args` field carrying it
(single occurrence), and the operator's flag preserved when the sandbox
injection is not requested. Existing "adds --skip-git-repo-check when
requested" case unchanged.
- `cd packages/adapters/codex-local && pnpm vitest run` — full package
suite (218 tests).
- `pnpm run typecheck` in the package.

## Risks

- Low. The change only suppresses a duplicate of a single, idempotent
flag; it never removes an operator-supplied argument and never adds one
that was not already going to be present.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — extended
thinking, agentic tool use (file edits, vitest/tsc runs). No other
models involved.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-31 20:37:51 -07:00
9c1f8e7887 feat(decisions): add first-class propose mode (#10010)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents can currently perform many mutations directly, while humans
often need a durable review point before cross-issue or destructive
actions occur
> - Existing approvals and issue-thread interactions do not provide a
standalone, reusable object for presenting options, collecting typed
inputs, detecting stale targets, and auditing effect execution
> - The control plane therefore needs a first-class propose mode that
separates an agent's recommendation from the governed mutation it may
cause
> - This pull request adds Decisions v1 across the database, shared
contracts, server execution and telemetry, agent skill guidance, and
operator UI
> - The benefit is that agents can propose multi-option actions safely
while operators get explicit provenance, fail-closed execution,
per-effect results, and a focused attention workflow

## Linked Issues or Issue Description

### Subsystem affected

Cross-cutting: `packages/db`, `packages/shared`, `server`, and `ui`.

### Problem or motivation

Agents need a governed way to propose consequential work without
immediately mutating issues, especially when one choice can affect
several issue trees. Existing approvals and issue-thread interactions do
not provide a standalone object with typed options, target snapshots,
effect-level authorization, expiration, execution outcomes, and reusable
attention-feed presentation.

### Proposed solution

Add first-class Decisions that store options and typed inputs, surface
open proposals in the operator attention feed, validate target freshness
and the origin-agent/operator authorization intersection at decision
time, execute a bounded set of auditable effects, and retain terminal
outcomes. Decisions v1 supports comments, status and assignee changes,
follow-up issue creation, blocker resolution, and issue-tree
cancellation, plus bundle grouping, expiration/dismissal, rule-key
telemetry, and agent-facing API guidance.

### Alternatives considered

- Extend approvals with arbitrary effects: rejected because approvals
represent governed yes/no actions and would become an unsafe generic
mutation envelope.
- Model every proposal as an issue-thread interaction: rejected because
decisions can span several targets and need independent lifecycle,
telemetry, idempotency, and effect results.
- Let agents perform the mutation and ask for retrospective review:
rejected because it removes the pre-execution governance boundary this
feature is meant to provide.

### Roadmap alignment

Aligns with `ROADMAP.md` sections **Agent Reviews and Approvals**,
**Enforced Outcomes**, **MCP Tool Gateway & Apps (governed tool
access)**, and **Activity History** by making explicit decisions,
authorization gates, auditable execution, and terminal outcomes
first-class control-plane objects.

### Additional context

This does not replace existing approvals or issue-thread interactions,
and it does not add an unrestricted generic mutation effect.

## What Changed

- Added company-scoped decision, option, target, and effect-execution
schema plus migration and shared TypeScript/Zod contracts.
- Added decision routes and services for propose, list/get, decide,
dismiss, cancel, target freshness checks, authorization intersection,
idempotency, activity logging, and execution auditing.
- Added rule-key decision telemetry and attention-feed metadata so open
decisions are visible and measurable.
- Added agent skill documentation for proposing and resolving decisions
through the Paperclip API.
- Added the Decisions UI: API client, query keys, inline attention
resolver, bundle grouping, target-issue strip, terminal history,
destructive confirmation, and per-effect result rendering.
- Added server service coverage, DecisionCard state tests, and Storybook
stories for the supported visual states.

## Verification

- `pnpm -r typecheck` — passed.
- `pnpm test:run` — 2,876 passed, 1 skipped, with one unrelated
cross-suite cleanup-order failure in
`heartbeat-responsible-user-invariant.test.ts`; the failing file passes
in isolation (`6/6`).
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/heartbeat-responsible-user-invariant.test.ts` — passed.
- `pnpm --filter @paperclipai/ui exec vitest run
src/components/DecisionCard.test.tsx` — passed (`9/9`).
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/authz-existence-oracle-guard.test.ts
src/__tests__/openapi-routes.test.ts` — passed (`5/5`).
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/decisions-service.test.ts` — passed (`16/16`).
- `pnpm --filter paperclipai exec vitest run
src/__tests__/company-import-export-e2e.test.ts` — passed (`1/1`).
- `pnpm --filter @paperclipai/server typecheck` and `pnpm --filter
paperclipai typecheck` — passed.
- `pnpm build` — passed.
- Rebased-head focused suite — passed (`6` files, `88` tests): shared
decision contracts, Decisions service, OpenAPI routes, startup feedback
export, DecisionCard states, and attention helpers. The follow-up
stale-secondary-target regression passes in the DecisionCard suite
(`10/10`).
- Rebased-head scoped typechecks — passed for `@paperclipai/shared`,
`@paperclipai/db`, `@paperclipai/server`, and `@paperclipai/ui`.
- Rebased-head migration numbering and safety checks — passed after
renumbering the additive migration to `0193` and making it replay-safe
for environments that applied the earlier feature-branch number.
- `pnpm check:token-gates` — passed with all gates clean.
- GitHub PR workflow and Greptile review for
`1f9f7645882d05dfdd9c99377c03a1f53f20e8be` — running after the
stale-secondary-target fix and PR metadata refresh on July 27, 2026.
- `pnpm --filter @paperclipai/ui build-storybook` exposes an existing
Storybook version mismatch (`storybook` 10.4.6 vs
`@storybook/addon-docs` 10.5.0); Decisions stories were validated with
the docs addon temporarily disabled and the tracked config remains
unchanged.

## Risks

- **Migration:** Adds replay-safe migration `0193`; migration numbering
and safety checks pass. The new tables and indexes are additive.
- **Authorization:** Effect execution intersects the proposing agent's
permissions with the responsible user context and fails closed; mistakes
could reject a valid proposal rather than silently over-authorize it.
- **Concurrency:** Target snapshots and idempotency keys protect against
stale or duplicate execution, but reviewers should focus on mixed-effect
partial outcomes and retry behavior.
- **UI:** Decisions are integrated into the existing attention feed
rather than a separate navigation surface, reducing routing risk but
increasing the importance of attention-item metadata compatibility.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex CLI using `gpt-5.6-sol` for final PR preparation, review
fixes, and verification; repository tools and code execution were
enabled, and context-window size is not exposed in this runtime.
- Anthropic Claude Opus 4.8 with 1M context assisted with the Decisions
UI implementation, as recorded in the relevant commits.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-31 19:17:02 -07:00
71231dfa38 feat(audit): agent audit UI — company page + per-agent tab (#9744)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Operators need an audit record of agent actions across tasks,
comments, documents, approvals, and runs
> - The permission-gated audit read API provides that record, but
operators cannot inspect it in the product
> - A readable UI must preserve company boundaries, server-side
permission decisions, and redaction
> - Audit exports must also be safe to open in spreadsheet software and
must record the export itself
> - This pull request adds company and per-agent audit views plus a
guarded CSV export
> - The benefit is a searchable, filterable, and reviewable agent action
history with direct links back to work

## Linked Issues or Issue Description

**Feature.** This change adds the frontend and CSV export for the agent
action audit log.

Refs #9731 and #9735.

- Problem: agent actions are recorded, but operators have no readable
product surface to inspect or export them.
- Solution: add a company audit page and a per-agent Audit tab that use
the permission-gated audit API.
- Alternative: build a separate plugin-only surface. This was rejected
because the existing permission model already supports a unified,
server-authoritative view.

This pull request targets the audit epic branch, which contains the
merged #9735 audit API.

## What Changed

- Added a company Audit page and sidebar entry.
- Added a per-agent Audit tab with a fixed agent filter.
- Added filters for agent, responsible user, action domain, entity type,
and date range.
- Added task and run links, responsible-user context, cursor pagination,
and readable action text.
- Added a permission-denied Enterprise card for callers without
`audit:view_agent_actions`.
- Added a CSV export that is permission-gated, capped, self-audited,
CSV-escaped, and protected against spreadsheet formula injection.
- Preserved the merged audit API cursor validation, redaction, and
sub-millisecond pagination behavior.

## Verification

- `pnpm exec vitest run ui/src/pages/audit/AuditFeed.test.tsx` — 6
passed.
- `pnpm --filter @paperclipai/server exec vitest run
src/__tests__/agent-action-audit-routes.test.ts` — 8 passed with
embedded PostgreSQL.
- `pnpm -r typecheck` — passed across all workspaces.
- `pnpm build` — passed across all workspaces.
- `pnpm test:run` — all completed shards passed except one
environment-sensitive CLI assertion caused by injected static AWS
credential variables; the exact test passes 8/8 with those variables
unset.
- Manual Chromium QA exercised the populated feed, active filters,
permission-denied card, per-agent tab, and CSV export.

## Screenshots and Manual QA

- [All audit states exercised in
Chromium](https://github.com/paperclipai/paperclip/pull/9744#issuecomment-4998997001)
- [Detailed browser report and per-agent tab root
cause](https://github.com/paperclipai/paperclip/pull/9744#issuecomment-4998771061)

The per-agent redirect defect found during QA is fixed in this branch.

## Risks

Low to moderate risk. The UI and export route are additive and use the
existing company-scoped permission gate. The main risks are large
exports and spreadsheet interpretation. The export is capped at 10,000
rows, records truncation accurately, and prefixes formula-like cells as
text. There are no schema changes or migrations.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- Anthropic Claude Opus 4.8, 1M context, extended thinking, tool use,
and code execution produced the original implementation.
- OpenAI Codex, GPT-5 (deployment ID and context window not exposed),
reasoning, tool use, code execution, browser-test orchestration, and
GitHub review tooling repaired and verified the pull request.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-07-31 19:09:13 -07:00
DottaandPaperclip 2e4774ac90 fix(adapter-utils): correct confirmation wake semantics (#10588)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Local agent wakes include a default execution contract
> - That contract tells agents how issue-thread continuation policies
behave
> - The current text says `wake_assignee` resumes a confirmation only
after acceptance
> - The server actually wakes for every non-expired resolution and
reserves acceptance-only behavior for `wake_assignee_on_accept`
> - This pull request makes the default prompt match the server contract
and strengthens the recovery follow-up regression case
> - The benefit is that agents choose the correct continuation policy
and recovery tests cover normalized agent name keys

## Linked Issues or Issue Description

Related work: Refs #5473, Refs #5060, and Refs #10562.

**What happened?**

The default local-agent prompt described `wake_assignee` as
acceptance-only for `request_confirmation`. This conflicts with the
server. The server wakes on every non-expired resolution. A recovery
follow-up test also used an already-normalized execution agent name key,
so it did not exercise the normalization seam.

**Expected behavior**

The prompt must state that `wake_assignee` resumes after acceptance or
rejection. It must direct acceptance-only flows to
`wake_assignee_on_accept`. The recovery regression must use a
display-style agent name key and prove that the follow-up path still
works after normalization.

**Steps to reproduce**

1. Read the default local-agent prompt in
`packages/adapter-utils/src/server-utils.ts`.
2. Compare its confirmation continuation text with
`queueResolvedInteractionContinuationWakeup` in
`server/src/routes/issues.ts`.
3. Observe that the prompt gives acceptance-only semantics to
`wake_assignee`.
4. Inspect the recovery hand-back test and observe that its execution
name key is already normalized.

**Paperclip version or commit**

`7301fae942`

**Deployment mode**

Local dev. The prompt and test behavior are not deployment-specific.

## What Changed

- Corrected the default agent prompt for `wake_assignee` and
`wake_assignee_on_accept`.
- Added focused prompt assertions for both the required and obsolete
text.
- Changed the recovery follow-up fixture to use a display-style agent
name key.

## Verification

- `pnpm exec vitest run packages/adapter-utils/src/server-utils.test.ts
-t 'keeps the default local-agent prompt action-oriented'` passed: 1
test.
- `pnpm exec vitest run
server/src/__tests__/heartbeat-comment-wake-batching.test.ts -t 'defers
recovery hand-back wakes until the resolving run exits'` passed: 1 test.
- `pnpm --filter @paperclipai/adapter-utils typecheck` passed.
- `pnpm --filter @paperclipai/server typecheck` passed.
- `git diff --check origin/master...HEAD` passed.

## Risks

- Low risk. The production change updates prompt text only.
- Agents that followed the old text may now choose
`wake_assignee_on_accept` for acceptance-only flows.
- The server test change only broadens an existing regression fixture.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with GPT-5. The exact serving model ID and context-window
size are not exposed to the agent. The model used reasoning, repository
tools, tests, Git, and GitHub CLI access.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 18:53:53 -07:00
DottaandPaperclip 627728bdde feat: add authoritative issue PATCH receipts (#10478)
<!-- Write all pull request text in Simplified Technical English
(ASD-STE100): short sentences, one instruction per sentence, simple
approved vocabulary, and the active voice. -->

## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work.
> - Agents update tasks through the issue API.
> - The update response did not state which values changed.
> - Blocker updates also did not echo the scalar blocker IDs.
> - Agents therefore used an extra GET request to confirm a successful
write.
> - This pull request adds an authoritative change receipt and an
optional small response.
> - The benefit is fewer API calls with a clear and compatible write
contract.

## Linked Issues or Issue Description

No public GitHub issue exists for this change.

### Subsystem affected

Cross-cutting: `server/`, `packages/shared`, and the UI issue cache.

### Problem or motivation

A successful issue PATCH returned the updated issue, but it did not
identify the effective changes. Blocker writes returned relation
summaries without the scalar IDs. Agents could not distinguish a
confirmed clear operation from missing data. The response must confirm
committed field and blocker changes while existing UI clients continue
to receive the full issue by default.

### Proposed solution

Add a `changes` receipt. Add a conditional `blockedByIssueIds` echo.
Support `Prefer: return=minimal`. Keep the full response as the default.

### Alternatives considered

Make the small response the default for agent tokens. This would create
different response contracts by actor type, so this pull request does
not use that design.

### Roadmap alignment

This is a focused control-plane reliability improvement. It does not
duplicate an open roadmap milestone.

## What Changed

- Compute committed issue row and relation changes in the issue service.
- Omit no-op fields and truncate changed long text values to 200
characters.
- Echo blocker ID arrays for blocker set and clear requests.
- Add the opt-in `Prefer: return=minimal` response and
`Preference-Applied` header.
- Keep receipt metadata out of React Query issue caches.
- Add route and embedded Postgres tests for the new contract.

## Verification

- `pnpm exec vitest run
server/src/__tests__/issue-activity-events-routes.test.ts`
- `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t
"returns authoritative update receipts for row fields and blocker
relations"`
- `pnpm --filter @paperclipai/shared typecheck`
- `pnpm --filter @paperclipai/server typecheck`
- `pnpm --filter @paperclipai/ui typecheck`
- `pnpm check:token-gates`
- `git diff --check`

## Risks

- Low compatibility risk. The default response only adds receipt fields.
- Minimal mode is opt-in. Existing clients do not receive a smaller
body.
- The receipt excludes `updatedAt` because the response already returns
it as the freshness anchor.
- Prose API and agent workflow guidance will follow after the server
contract is available.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex based on GPT-5. The exact deployment ID, context window
size, and reasoning mode are not exposed to the agent. The agent used
repository tools, code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 18:52:59 -07:00
fc5a30805e feat(cli): add managed install, update, and service lifecycle (#10045)
## Thinking Path

> - Paperclip is the open source control plane people use to manage
AI-agent companies
> - Operators need a predictable installation path that survives beyond
an ephemeral `npx` process
> - A durable installation needs an owned per-user payload store, stable
command shim, safe shell integration, and supported service lifecycle
> - Updates must preserve recoverability by backing up data, installing
side-by-side, verifying the new payload, and retaining rollback state
> - Bootstrap scripts and privileged service operations must fail closed
across download, filesystem, ownership, and consent boundaries
> - This pull request integrates managed install, update, rollback,
service, uninstall, doctor, bootstrap-installer, and runtime-serving
support into one workflow
> - The benefit is a recoverable, inspectable, and documented
installation lifecycle with explicit safety boundaries across Linux,
macOS, containers, WSL, npm, npx, and source checkouts

## Linked Issues or Issue Description

### Problem

Paperclip lacks a first-class durable installation and lifecycle
workflow. Operators currently have to assemble npm/npx installation,
PATH setup, background-service management, updates, rollback,
diagnostics, and uninstall behavior themselves. That makes upgrades
harder to recover, creates inconsistent behavior across platforms, and
leaves shell/download/service trust boundaries without one documented
implementation.

### Proposed Solution

Add a managed per-user install store and stable shim, a verified shell
bootstrap installer, service lifecycle commands, install-mode-aware
update/rollback behavior, doctor checks, and documentation. Managed
updates back up the database, install and smoke-test a side-by-side
payload, atomically switch `current`, and retain prior payloads. The
shell installer pins registry/download trust boundaries and requires
explicit consent for non-interactive privileged actions.

### Alternatives Considered

- Keep recommending `npx`: simple for evaluation, but ephemeral and
unsuitable for stable services, atomic updates, or rollback.
- Require global npm installation only: familiar, but cannot provide the
owned side-by-side payload store and retained rollback semantics.
- Split the capability across multiple PRs: rejected because install,
update, service, uninstall, bootstrap, and serving behavior share
contracts and security boundaries that need review together.

### Related Pull Requests

- Supersedes #10042 and #10044 with one integrated final diff.
- Incorporates and replaces the closed preparatory work in #10032 and
#10034.

## What Changed

- Added `paperclipai install`, `update`/`upgrade`, rollback, uninstall,
service lifecycle, onboarding integration, and managed-install doctor
checks.
- Added a private managed payload store, verified manifest/marker
ownership, exclusive mutation locks, atomic manifest/current/shim
writes, retained previous payloads, and provenance validation.
- Added npm and GitHub-ref install sources with exact target resolution,
registry isolation, database backup, side-by-side verification, atomic
activation, service restart coordination, and failure rollback.
- Made managed-update backups report actionable service-start and
`--no-backup` recovery guidance for unreachable databases, while clean
never-onboarded instances skip an empty backup.
- Added systemd user and launchd service definitions, status/health/log
commands, single-instance coordination, stale-port recovery, and
explicit sudo/lingering consent handling.
- Added the `scripts/install.sh` bootstrap path with checked two-stage
downloads, pinned public npm registry usage, platform checks,
dry-run/non-interactive controls, and Docker fixtures.
- Added embedded Postgres/native bootstrap integration,
hot-restart/systemd-notify serving support, passive update notices,
configuration contracts, README/CLI/install documentation, and focused
regression tests.
- Security re-review should explicitly re-verify: (1)
`addManagedPathBlock`/`removeManagedPathBlock` reject symlinked or
non-regular rc files, assert current-user ownership, preserve
restrictive modes, and replace atomically; (2) managed shim replacement
rejects unsafe parents, foreign-owned or multiply linked files, and uses
checked atomic replacement; (3) the shell installer and sudo path
preserve explicit consent and checked downloads; and (4) installed
service/runtime serving remains bound to the validated managed shim and
instance configuration.

## Verification

- `bash -n scripts/install.sh scripts/clean-install-git.sh
scripts/clean-install-npm.sh scripts/test-install-sh-docker.sh`
- `pnpm exec vitest run cli/src/__tests__/install-store.test.ts
cli/src/__tests__/install-command.test.ts
cli/src/__tests__/managed-install-check.test.ts
cli/src/__tests__/onboard-service.test.ts
cli/src/__tests__/service-health-check.test.ts
cli/src/__tests__/service-manager.test.ts
cli/src/__tests__/update-command.test.ts
cli/src/__tests__/update-notice.test.ts
packages/db/src/embedded-postgres-native.test.ts` — 9 files, 66 tests
passed
- `pnpm --dir cli typecheck`
- `pnpm --dir cli build`
- Follow-up verification: `pnpm exec vitest run
cli/src/__tests__/update-command.test.ts` (14/14), `pnpm --dir cli
typecheck`, `pnpm --dir cli build`, and `pnpm --filter
@paperclipai/server typecheck`.
- `pnpm -r typecheck`
- `pnpm build`
- Full `pnpm test:run` exercised all suites; an injected static AWS
credential changed one unrelated doctor expectation, which passed when
those credentials were removed. A second run cleared that case and
exposed stale pre-existing adapter-utils `dist` output; rebuilding
`@paperclipai/adapter-utils` made the isolated test pass. The updated PR
CI is the authoritative clean-workspace full-suite run.

## Risks

- Installer/update code writes executable shims, symlinks, shell rc
blocks, service definitions, and managed payloads; ownership,
regular-file, symlink, hard-link, marker, and path-containment checks
fail closed before destructive changes.
- The bootstrap installer executes downloaded tooling; downloads are
staged and checked before execution, npm traffic is pinned to the public
registry, and non-interactive privileged behavior requires explicit
consent.
- Linux lingering may invoke `sudo`; the command is surfaced and
confirmed before execution, and unsupported service managers fall back
to foreground-run guidance.
- Database migrations remain forward-only; payload rollback does not
reverse migrations, so managed updates create a backup before activation
unless explicitly disabled.
- Service restart and runtime serving touch process/port ownership;
lifecycle locks, health/version checks, and stable-shim service
definitions reduce split-brain and stale-process risk.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex coding agents using GPT-5.5 and GPT-5.6-sol, with
reasoning, repository/API access, shell execution, and test tooling. The
runtime did not expose a reliable context-window size.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
2026-07-31 18:52:23 -07:00
Devin Foley c0b875c46c fix(codex): let sandbox runs use the sandbox image's own Codex login (#10582)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Codex agents can run inside sandbox environments, and operators can
bake a Codex login into the sandbox image during interactive image setup
> - Two credential gates (the control plane's pre-dispatch
configuration-incomplete gate and the adapter's execute-time fail-fast)
required host-side Codex credentials — a usable `auth.json` in the
managed home or a configured `OPENAI_API_KEY` — regardless of where the
run executes
> - On managed cloud hosts a local Codex login never exists, so every
sandbox run of a Codex agent failed immediately with "configuration
incomplete: no Codex credentials available for managed home …", even
though the adapter's inbound auth merge already supports the image-login
case end to end
> - This pull request makes the execute-time gate probe the sandbox for
its own `~/.codex/auth.json` before failing, and exempts
sandbox-destined runs from the pre-dispatch host check
> - The benefit is that a sandbox image signed in to Codex is a
first-class credential source, matching what the auth-merge,
precedence-warning, and copy-back machinery were already built for

## Linked Issues or Issue Description

**What happened?**

Running a `codex_local` agent in a sandbox environment whose image
carries a Codex login failed instantly with `configuration incomplete:
no Codex credentials available for managed home "…/codex-home". Sign in
to Codex on the host with a ChatGPT subscription, or bind a per-agent
OPENAI_API_KEY secret for this agent.` The host has no Codex login and
never will on a managed cloud deployment; the sandbox's own login was
never consulted.

**Steps to reproduce**

1. Configure a sandbox environment and capture a custom image after
signing in to Codex inside the interactive image setup.
2. Create a `codex_local` agent that uses that environment, on a host
with no Codex login and no `OPENAI_API_KEY` bound.
3. Start a run: it fails pre-dispatch with the configuration-incomplete
blocker above.

**Expected behavior**

The run launches and Codex authenticates with the sandbox image's own
login, the same way the adapter's host↔sandbox auth merge already keeps
the sandbox credential when the host ships none. A run should only fail
fast when neither the host, a bound `OPENAI_API_KEY`, nor the sandbox
has credentials.

**Paperclip version**

Current `master` (cloud image deployments).

**Deployment mode**

Managed cloud stacks (any deployment where the server host has no local
Codex login).

## What Changed

- Extracted the adapter's execute-time gate into
`assertCodexCredentialsLaunchable`: when host readiness fails and the
target is a sandbox, it probes `~/.codex/auth.json` in the sandbox (same
command the auth-precedence warning uses) and proceeds with a log line
naming the credential source; when the sandbox has no login either, the
error now names all three remediation options (sandbox image sign-in,
per-agent `OPENAI_API_KEY`, host sign-in). Non-sandbox targets keep
today's strict behavior byte-for-byte.
- The control plane's pre-dispatch gate in
`resolveExecutionRunAdapterConfig` now takes the selected environment's
driver and skips the host-credential check for sandbox-destined runs —
only the adapter can probe the sandbox once it is up, so the
execute-time gate is the authority there. Non-sandbox runs keep the
early, well-attributed configuration-incomplete blocker.
- The codex Test flow needed no change: it already seeds host
credentials only when they exist and otherwise leaves the sandbox's
`CODEX_HOME` alone; this aligns the run path with it.

## Verification

- `cd packages/adapters/codex-local && pnpm vitest run` — 210 tests,
including new gate cases: sandbox login present (proceeds + logs
source), sandbox and host both credential-less (fails with the extended
message), non-sandbox target (strict host requirement kept, no sandbox
probe), per-agent API key (no probe at all).
- `cd server && pnpm vitest run
src/__tests__/heartbeat-project-env.test.ts
src/__tests__/codex-local-adapter-environment.test.ts` — includes the
new sandbox-exemption case next to the existing blocker tests.
- `pnpm run typecheck` in `server` and `packages/adapters/codex-local`.

## Risks

- Sandbox-destined misconfigurations (no credentials anywhere) now
surface at adapter execute time instead of pre-dispatch, so they read as
an adapter failure with a precise message rather than a
configuration-incomplete blocker. The trade-off is deliberate: the
sandbox must be up to know whether credentials exist, and the failure
message names the exact remediations.
- The sandbox probe adds one short (5s-capped) shell command to sandbox
runs whose host has no credentials; runs with host credentials or a
bound key are untouched.
- Self-hosted behavior is unchanged for local and SSH targets.

## Model Used

Claude Fable 5 (`claude-fable-5`, Anthropic) via Claude Code — extended
thinking, agentic tool use (file edits, vitest/tsc runs). No other
models involved.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge
2026-07-31 18:36:36 -07:00
DottaandPaperclip 1ee1275f11 fix(adapters): persist ACPX process identity for hot restart (#9838)
## Thinking Path

> - Paperclip is the open source control plane people use to manage AI
agents for work.
> - Local agent heartbeats need durable process identity so the server
can supervise them.
> - The ACPX runtime owns the child process used by `codex_local`
sessions.
> - ACPX did not expose the child PID and start time to the Paperclip
adapter.
> - Warm ACPX runtimes can also serve a later heartbeat without a new
spawn event.
> - A hot restart could therefore classify a live Codex run as lost
because its heartbeat row had no process identity.
> - This pull request forwards ACPX spawn identity, reuses it for
compatible warm heartbeats, and fails closed when identity cannot be
persisted.
> - The benefit is reliable hot-restart adoption for eligible local
Codex runs.

## Linked Issues or Issue Description

No matching public GitHub issue was found.

**What happened?**

A `codex_local` heartbeat could run through ACPX without a persisted
`processPid` or `processStartedAt`. A Paperclip hot restart then had no
durable identity for the live ACP child. Recovery could classify the run
as `process_lost` even while the child was still alive.

**Expected behavior**

ACPX reports the real child PID and start time before the first prompt.
A compatible warm runtime reports the same known identity to each later
heartbeat that reuses the child. ACPX stops the child if the identity is
invalid or persistence fails. Hot-restart recovery can then adopt the
live run.

**Steps to reproduce**

1. Start a `codex_local` heartbeat through the ACPX execution lane.
2. Keep the run active during a Paperclip hot restart.
3. Inspect the heartbeat row before this change.
4. Observe that the process identity can be null and recovery cannot
adopt the live child.

**Reproduced on**

- Paperclip `master` before this change.
- Linux source deployment.
- `codex_local` with ACPX `0.12.0`.

## What Changed

- Add an awaited `onAgentSpawn` lifecycle hook to the patched ACPX
runtime.
- Forward the ACP child PID and start time through the adapter `onSpawn`
callback.
- Keep a mutable callback sink for cached runtimes so a later respawn
updates the current heartbeat.
- Reuse the last known process identity when a compatible warm heartbeat
reuses the existing child.
- Kill the ACP child and fail session startup when the PID is invalid or
identity persistence rejects.
- Add ACPX and heartbeat recovery tests for callback ordering, warm
reuse, failure cleanup, durable row identity, and hot-restart adoption.
- Document the one-time drain required when an installed pre-fix run
already lacks process metadata.

## Verification

-
`PAPERCLIP_HOME="$PAPERCLIP_RUN_SCRATCH_DIR/test-home-execute-escalated"
pnpm exec vitest run
packages/adapter-utils/src/acpx-engine/execute.test.ts` — 89 passed.
-
`PAPERCLIP_HOME="$PAPERCLIP_RUN_SCRATCH_DIR/test-home-recovery-escalated"
pnpm exec vitest run
server/src/__tests__/heartbeat-process-recovery.test.ts` — 92 passed.
-
`PAPERCLIP_HOME="$PAPERCLIP_RUN_SCRATCH_DIR/test-home-remote-smoke-escalated"
pnpm exec vitest run
packages/adapter-utils/src/acpx-engine/remote-spawn-smoke.test.ts` — 3
passed.
-
`PAPERCLIP_HOME="$PAPERCLIP_RUN_SCRATCH_DIR/test-home-ci-repro-escalated"
pnpm exec vitest run
server/src/__tests__/heartbeat-dependency-scheduling.test.ts` — 6
passed.
- `pnpm --filter @paperclipai/adapter-utils typecheck` — passed.
- Reverse and forward dry-run application of `patches/acpx@0.12.0.patch`
— passed.
- `git diff --check` — passed.
- `git diff --exit-code origin/master...HEAD -- pnpm-lock.yaml` —
passed.
- `git diff --exit-code origin/master...HEAD -- .github/workflows` —
passed.

## Risks

- Runtime risk is low to moderate. ACPX now awaits process-identity
persistence during child startup.
- ACPX kills the child when persistence fails. This prevents an
unsupervised process, but it makes that heartbeat fail visibly.
- A compatible warm heartbeat reuses the identity of the existing ACP
child. Regression tests verify that identity is persisted before the
next prompt.
- The change updates the vendored ACPX patch. Package installation must
apply that patch.
- There are no schema, migration, public API, UI, workflow, or lockfile
changes.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex used GPT-5.3-Codex for the earlier implementation.
- OpenAI Codex used GPT-5 for the lifecycle-hook revision and the
current fail-closed review fix. The runtime did not expose a more
specific snapshot ID or context-window size. Both runs used reasoning,
repository tools, and code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 14:43:46 -07:00
Nicky LeachandPaperclip 53bcf3897f feat: sync @-mentioned projects into remote sandboxes (confined sandbox transport, flag ON) (#10564)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The run layer must move project context into the sandbox that
executes the agent
> - Local sandboxes already stage referenced projects for @-mentions
> - Remote confined sandboxes dropped the whole referenced set, so the
agent lost needed files and paths
> - This pull request keeps the confined sandbox transport aligned with
the local behavior for referenced projects
> - It does this behind a remote-only flag that defaults on, while SSH
keeps the old drop-only path
> - The benefit is that remote runs can read the same referenced project
context that local runs already provide

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting. This change touches server orchestration, sandbox
transport, and observability.

**Problem or motivation**

A run can @-mention another project. Local targets stage each referenced
project and give the agent a path. Remote confined sandboxes dropped the
full referenced set, so the agent could not read those project files or
paths.

**Proposed solution**

Enable referenced-project sync for the confined sandbox transport behind
`PAPERCLIP_MULTI_PROJECT_WORKSPACE_SYNC_REMOTE`, which defaults on. Keep
the SSH transport out of scope and keep it dropping referenced projects.
Repoint each referenced workspace hint at its staged
`project-<projectId>` sandbox directory. Publish
`PAPERCLIP_WORKSPACES_JSON` on the confined sandbox lane. Count each
per-project remote staging failure as a `staging` failure in the
requested-vs-synced metrics.

**Alternatives considered**

Keep the remote path drop-only. That keeps the gap open. Move the change
into SSH too. That expands scope beyond the target transport and adds
risk.

**Roadmap alignment**

No matching item in `ROADMAP.md` showed up in this review.

**Additional context**

The change lands in three commits. The first commit opens the gate for
the confined sandbox transport. The second commit repoints the workspace
hints and publishes the workspace map. The third commit records
per-project staging failure data.

## What Changed

- Opened remote referenced-project sync for the confined sandbox
transport behind `PAPERCLIP_MULTI_PROJECT_WORKSPACE_SYNC_REMOTE`.
- Repointed referenced workspace hints to the staged
`project-<projectId>` sandbox directories and published
`PAPERCLIP_WORKSPACES_JSON`.
- Counted per-project remote staging failures as first-class `staging`
failures in the requested-vs-synced observability.

## Verification

- The pushed ref
`refs/heads/feat/sync-referenced-projects-remote-sandbox` resolves to
the authorized submit SHA.
- `git log --oneline
origin/master..origin/feat/sync-referenced-projects-remote-sandbox`
shows exactly the three expected commits.
- The handoff reports server typecheck clean, adapter-utils typecheck
clean, and the listed unit tests passing.
- The handoff also reports no open review comments and no Greptile score
yet.

## Risks

- The change touches authorization and sandbox path handling, so
regressions could block remote runs or expose the wrong project context.
- The new flag defaults on, so any bug in the remote path affects normal
remote use.
- SSH stays out of scope, so the two transport paths must remain
distinct.

## Model Used

OpenAI GPT-5 via Codex. Tool use enabled. Context window not reported in
this run.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 13:31:17 -07:00
Nicky LeachandPaperclip c4f62644b0 docs(daytona): document operator enablement for the advisory bwrap wrapper (#10560)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The Daytona sandbox provider now uses an advisory bwrap wrapper
> - Operators need clear host and image setup for bubblewrap, sudo, and
user namespaces
> - The repo should document that setup, but it should not own
provisioning
> - This pull request adds the operator guidance to the shared sandbox
requirements and the Daytona README
> - The benefit is that operators can enable the wrapper with the same
steps the code expects

## Linked Issues or Issue Description

Refs #10554 and #10541.

## What Changed

- Added an advisory bwrap prerequisites section to
`packages/plugins/sandbox-providers/SANDBOX-REQUIREMENTS.md`.
- Added an operator enablement section to
`packages/plugins/sandbox-providers/daytona/README.md`.
- Documented the install commands, the sudoers rule, the user namespace
setting, and the verification command.
- Kept provisioning out of the repo and left it to the image or snapshot
layer.

## Verification

- `git diff --check origin/master...HEAD`
- `gh pr checks 10560`

## Risks

- Low risk. This change updates documentation only.
- The docs can drift if the host setup changes later.
- Provisioning still lives outside the repo.

## Model Used

- OpenAI Codex, GPT-5, tool use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues with `Fixes: #` / `Closes: #`
/ `Refs #` OR described the issue in-PR following the relevant issue
template
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 11:50:11 -07:00
d295251550 feat(adapter-claude): add Claude Sonnet 5 to the static model fallback (#10280)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - Agents pick their model from a dropdown in agent config, populated
per-adapter by `listAdapterModels()` → each adapter's live provider
catalog merged over a static fallback list
> - For `claude_local`, newer model ids only reach the dropdown via the
live Anthropic `/v1/models` fetch, which needs a server
`ANTHROPIC_API_KEY`, a <5s round-trip, non-Bedrock mode, and account
entitlement; on any miss it silently falls back to the static `models`
array
> - Claude Sonnet 5 (`claude-sonnet-5`) is a current flagship but was
absent from that static fallback, so it appeared only when live
discovery happened to succeed — i.e. "the newest model doesn't
consistently show up"
> - This pull request adds `claude-sonnet-5` to the `claude_local`
static model list so it is selectable regardless of the live-discovery
path
> - The benefit is a consistent, reliable dropdown that no longer
depends on a flaky live fetch to surface a shipped flagship model

## Linked Issues or Issue Description

No public GitHub issue. The bug is described inline following the
bug-report template:

**What happened**
The `claude_local` agent-config model dropdown intermittently omitted
Claude Sonnet 5. `claude-sonnet-5` was missing from the adapter's static
fallback `models` array (`packages/adapters/claude-local/src/index.ts`),
so it only surfaced when the live Anthropic `/v1/models` discovery
happened to succeed.

**Expected behavior**
Claude Sonnet 5 is a shipped flagship model and should always be
selectable in the dropdown, independent of whether live discovery
succeeds.

**Steps to reproduce**
1. Run the server without a working live Anthropic `/v1/models` path (no
`ANTHROPIC_API_KEY`, Bedrock mode, a discovery timeout, or a cache
miss).
2. Open agent config for a `claude_local` agent and inspect the model
dropdown.
3. Observe that `claude-sonnet-5` is absent because the static fallback
list omitted it.

**Deployment mode**
Self-hosted / local adapter (`claude_local`); the server process reads
`ANTHROPIC_API_KEY` from its environment.

## What Changed

- Added `{ id: "claude-sonnet-5", label: "Claude Sonnet 5" }` to the
`claude_local` static `models` fallback, immediately after
`claude-opus-4-8` (so Opus 4.8 stays the default first option).
- Added an explicit regression assertion in
`server/src/__tests__/adapter-models.test.ts` that `claude-sonnet-5` is
present in the `claude_local` fallback when live discovery is
unavailable.

## Verification

- `pnpm -C server exec vitest run src/__tests__/adapter-models.test.ts
-t "claude fallback"` — **passes** (the new `claude-sonnet-5` assertion
included).
- Reviewed the consuming tests: the fallback test also asserts
`models[0]?.id === "claude-opus-4-8"` (still index 0 — Sonnet 5 is index
1, unaffected); `adapter-registry.test.ts` reads `builtIn?.models`
dynamically, so no exact-array snapshot breaks.
- Change is a single static-data addition plus a test assertion; no
control-flow change.

## Risks

- Low risk. Pure additive change to a fallback list; no control-flow
change. Worst case is an id that a given account isn't entitled to,
which the existing "current"/manual-model UI paths already tolerate.

## Model Used

Claude (Anthropic), model id `claude-opus-4-8` (Opus 4.8), extended
thinking + tool use, run as the Paperclip CTO agent.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [ ] My branch name describes the change (branch is the assigned
execution-workspace branch and cannot be renamed this run)
- [x] I have run tests locally and they pass (server adapter-models
"claude fallback" case)
- [x] I have added or updated tests where applicable (explicit
`claude-sonnet-5` fallback assertion)
- [x] I have updated relevant documentation to reflect my changes (n/a —
no docs reference this list)
- [x] I have considered and documented any risks above
- [ ] All Paperclip CI gates are green (pending CI)
- [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
(pending review)
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 13:15:42 -05:00
Noah KellnerandNoah Kellner bd53b99686 feat(gemini-local): export detectGeminiQuotaExhausted for plugin adapter reuse (#3416)
## Thinking Path

> - Paperclip orchestrates AI agents via pluggable server-side adapters,
one per provider / CLI backend
> - Each adapter package exposes a server entry point
(`@paperclipai/adapter-<name>/server`) that downstream consumers —
including plugin adapters that wrap or extend the stock behavior —
re-use for helper functions
> - `gemini-local`'s server entry re-exports a curated set of parse
helpers from `./parse.js` (`parseGeminiJsonl`,
`isGeminiUnknownSessionError`, `describeGeminiFailure`,
`detectGeminiAuthRequired`, `isGeminiTurnLimitResult`) so consumers can
classify provider output without reaching into the package's internals
> - `detectGeminiQuotaExhausted` lives in the same `parse.ts` file next
to `detectGeminiAuthRequired`, is defined with `export function`, and is
the package's single source of truth for "is this output a Gemini quota
hit?" — but it is missing from the entry-point re-export block
> - As a result, any consumer that wants to classify quota exhaustion
either has to deep-import from `./server/parse.js` (brittle against
future `exports`-field changes) or reimplement the regex locally (drift
risk against the authoritative heuristic)
> - This pull request adds `detectGeminiQuotaExhausted` to the existing
re-export block, placed next to its thematic sibling
`detectGeminiAuthRequired`, with no other changes
> - The benefit is one extra supported public symbol on
`@paperclipai/adapter-gemini-local/server` — a purely additive ergonomic
improvement with no behavior change and no existing consumer impact

## What Changed

- `packages/adapters/gemini-local/src/server/index.ts`: added
`detectGeminiQuotaExhausted` to the `export { ... } from "./parse.js"`
block, inserted between `detectGeminiAuthRequired` and
`isGeminiTurnLimitResult` (thematic grouping — both `detect*` helpers)

## Verification

Local verification against the branch commit (base: `upstream/master` at
`b649bd45`):

```
$ pnpm --filter @paperclipai/adapter-gemini-local typecheck
> @paperclipai/adapter-gemini-local@0.3.1 typecheck
> tsc --noEmit
(exit 0)

$ pnpm --filter @paperclipai/adapter-gemini-local build
> @paperclipai/adapter-gemini-local@0.3.1 build
> tsc
(exit 0)

$ cd server && pnpm exec vitest run src/__tests__/gemini-local-execute.test.ts
 RUN  v3.2.4

 ✓ src/__tests__/gemini-local-execute.test.ts (3 tests) 1487ms
   ✓ gemini execute > passes prompt via --prompt and injects paperclip env vars
   ✓ gemini execute > always passes --approval-mode yolo
   ✓ gemini execute > uses a compact wake delta instead of the full heartbeat prompt when resuming a session

 Test Files  1 passed (1)
      Tests  3 passed (3)
```

Existing-consumer check — all references to `detectGeminiQuotaExhausted`
anywhere in the tree:

```
packages/adapters/gemini-local/src/server/index.ts:9    (this PR's new re-export)
packages/adapters/gemini-local/src/server/parse.ts:253  (the definition)
packages/adapters/gemini-local/src/server/test.ts:19    (intra-package import from "./parse.js")
packages/adapters/gemini-local/src/server/test.ts:174   (intra-package usage)
```

No cross-package consumer references the symbol today, so the new
re-export cannot break any existing import. It is strictly additive to
the public surface of `@paperclipai/adapter-gemini-local/server`.

## Risks

None. Purely additive re-export of a symbol that is already a named
export on `./parse.ts`. The clean-success path, failure paths, and all
other adapter behavior are untouched. No existing consumer is affected.

## Model Used

- **Provider**: Anthropic
- **Model**: Claude Opus 4.6 (1M context)
- **Interface**: Claude Code CLI
- **Role**: Upstream state verification (grep + diff against current
master), PR drafting against the `CONTRIBUTING.md` template, local
typecheck / build / test execution
- **Reasoning Mode**: Extended thinking enabled
- **Human oversight**: Noah Kellner reviewed the one-line re-export
addition and approved submission

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] If this change affects the UI, I have included before/after
screenshots
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Noah Kellner <noah.kellner@xenoscloud.com>
2026-07-31 13:00:26 -05:00
b4a7a12985 feat: make recovery updates quieter (#10542)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The recovery subsystem restores work after an agent run stops or
loses state
> - Recovery notices currently use the same visual weight as normal work
comments
> - Recovery agents can also post long narratives that obscure the
useful hand-off
> - The server must identify recovery output because agents cannot set
presentation controls
> - This pull request adds compact recovery notices, structured action
references, and brief recovery prompts
> - The benefit is a quieter issue thread that still keeps recovery
state inspectable

## Linked Issues or Issue Description

**Subsystem affected**

Cross-cutting: `server/`, `packages/shared`, and
`packages/adapter-utils`.

**Problem or motivation**

Recovery notices and recovery-run comments can dominate an issue thread.
Operators must scan routine recovery narration before they find the work
hand-off.

**Proposed solution**

Give routine recovery output a compact system-notice presentation.
Derive the presentation on the server so agents cannot hide arbitrary
comments. Keep the successful missing-state summary fully visible
because that comment is the recovery deliverable.

**Alternatives considered**

The UI could detect recovery text. That approach is fragile and does not
provide structured action references. Agents could also set presentation
directly, but that would weaken the current board-only security
boundary.

**Roadmap alignment**

This change refines the completed “Self-healing runs & automatic
recovery” and “Enforced Outcomes” roadmap areas. It does not add a
competing roadmap capability.

**Additional context**

The scope covers shared comment validation, server recovery notices,
agent-comment derivation, and recovery prompt text. No database
migration is needed because presentation data already uses JSON.

## What Changed

- Add the `compact` issue-comment presentation density to shared
constants, types, and validation.
- Give recovery escalation, waiting, and in-place notices compact titles
and structured recovery-action metadata.
- Use recovery-action metadata for notice deduplication, with the legacy
text marker as a compatibility fallback.
- Derive compact presentation for comments from recovery-scoped runs
while preserving the board-only presentation boundary.
- Keep successful missing-state recovery summaries fully visible.
- Ask recovery participants to record outcomes in `resolutionNote` and
keep source-issue comments brief.
- Add shared, route, service, and prompt tests for the new behavior and
exceptions.

## Verification

- `pnpm -r typecheck`
- Focused Vitest coverage: 320 tests passed across shared validators,
adapter prompts, issue comments, recovery actions, and heartbeat
recovery.
- Full server phase: 292 files passed, 3,094 tests passed, and 2 tests
skipped.
- Full UI phase: 386 files passed and 3,182 tests passed.
- `pnpm build`
- Known master baseline: `cli/src/__tests__/secrets.test.ts` expects
`pass`, but the current implementation returns `warn` when strict secret
mode is disabled for Postgres. This branch does not change CLI secrets
code.

## Risks

- Low migration risk. The presentation column is JSON and needs no
database migration.
- Recovery-run detection depends on the persisted run context snapshot.
- Structured metadata becomes the primary deduplication key. The
existing body marker remains as a fallback for older comments.

> For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and
discuss it in `#dev` before opening the PR. Feature PRs that overlap
with planned core work may need to be redirected — check the roadmap
first. See `CONTRIBUTING.md`.

## Model Used

- OpenAI Codex with `gpt-5.6-sol`. The runtime did not expose the
context-window size. The model used agentic reasoning, repository tools,
code execution, and test execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-31 09:55:01 -07:00
Nicky LeachandPaperclip 8c910b9a40 feat(daytona): activate the advisory bwrap wrapper at the execute seam (#10554)
## Thinking Path

> - Paperclip is the control plane for autonomous AI companies
> - Daytona runs code in a remote sandbox
> - The execute seam decides how agent commands run
> - The pure bwrap builder and the capability probes already merged in
#10541
> - This pull request activates the advisory bwrap wrapper at the
execute seam
> - The wrapper uses bwrap when the lease has the needed data and keeps
plain execution when wrap is not safe
> - The benefit is safer isolation without changing the current runtime
contract

## Linked Issues or Issue Description

- No public GitHub issue exists for this work.
- Related PR: #10541

Problem:
The Daytona execute seam can run commands without the advisory bwrap
wrapper when the lease does not yet provide the wrapper data.

Proposed solution:
Activate the advisory bwrap wrapper when the lease reports bwrap support
and a known uid or gid. Keep plain execution when wrap is not safe.

Alternatives:
- Always wrap every command. This can break current behavior and can
create root-owned files when the uid or gid is missing.
- Reject execution when bwrap is missing. This can fail a lease for a
best-effort wrapper and would change the current runtime contract.

Roadmap alignment:
This work fits the Cloud / Sandbox agents roadmap area.

## What Changed

- `executeOneShot` now accepts a bwrap execution plan.
- `onEnvironmentExecute` now reads the lease bwrap flags and the
writable sync paths.
- A helper resolves when the seam should wrap the command.
- The writable set now includes the workspace path and the collected
read-write sync destinations.
- The wrapper re-binds stdin after the fresh `/tmp` mount.
- The README explains the advisory wrapper behavior and the writable set
model.

## Verification

- `pnpm --filter @paperclipai/plugin-daytona exec vitest run
plugin.test.ts`
- `pnpm --filter @paperclipai/plugin-daytona exec tsc --noEmit`

## Risks

- A missing bwrap tool, a missing `sudo -n` rule, or a blocked user
namespace keeps plain execution.
- The change shifts the execute seam, so command setup needs careful
review.
- The wrapper is advisory, so it does not add a security boundary by
itself.

## Model Used

- OpenAI Codex, GPT-5, tool use, code execution.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either linked existing issues or described the issue in
this PR
- [x] I have not referenced internal or instance-local Paperclip issues
or links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 08:54:53 -07:00
Nicky LeachandPaperclip 70816c18e5 feat(daytona): add advisory bwrap command builder and capability probes (#10541)
## Thinking Path

> - Paperclip helps people manage AI agents for work
> - The Daytona sandbox provider needs a clear advisory wrapper path and
best-effort capability checks
> - The wrapper must not change the security model or block a lease when
the host lacks bubblewrap support
> - The lease metadata must carry the capability result so later steps
can make a stable choice
> - This pull request adds a pure command builder for the advisory
wrapper
> - This pull request adds non-throwing probes for bubblewrap and
sandbox uid or gid data
> - The benefit is a safer advisory path with no behavior change in the
execution seam

## Linked Issues or Issue Description

### Problem or motivation

The Daytona sandbox provider needs a clear advisory wrapper path and
best-effort capability checks.
The provider must not fail a lease when the host lacks bubblewrap
support.
The wrapper must stay advisory only.
It must not change the security model.

### Proposed solution

Add a pure command builder for the advisory wrapper and non-throwing
probes for bubblewrap and sandbox uid or gid data.
Store the probe result on the lease metadata so later steps can make a
stable choice.
Keep the execution seam unchanged.

### Alternatives considered

Do nothing and keep the current execution seam unchanged.
That path gives no signal when a file change is not durable.
This pull request adds the signal without changing runtime behavior.

### Roadmap alignment

This work fits the Daytona sandbox provider path and keeps the advisory
wrapper outside the execution seam.
It does not change the current security model.

### Additional context

The wrapper is advisory only.
It adds no security.
The read-only root is a feedback signal.

## What Changed

- Added `buildBwrapCommand` as a pure string builder for the advisory
wrapper command.
- Added `detectBwrapAvailable` and `detectSandboxUidGid` as best-effort
probes that never throw.
- Stored `bwrapAvailable`, `sandboxUid`, and `sandboxGid` on the lease
metadata in the acquire, resume, and probe hooks.
- Added a README section that describes the advisory wrapper model.
- Kept the execution seam unchanged.

## Verification

- `vitest run` for
`packages/plugins/sandbox-providers/daytona/src/plugin.test.ts`
- The run passed all 106 tests, including the new builder and probe
coverage.
- The standalone `tsc` run showed only the known baseline noise that
already exists on `master`.

## Risks

- Risk is low because the execution seam does not change.
- The new wrapper stays advisory and does not alter the sandbox security
model.
- The probe results only add metadata and do not fail the lease on
missing host support.

## Model Used

OpenAI Codex, GPT-5, tool use.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used with version and capability
details
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` / `Closes
#` / `Refs #` OR (b) described the issue in-PR following the relevant
issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links
- [x] My branch name describes the change and contains no internal
Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] I have considered and documented any risks above
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

---------

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-31 07:52:28 -07:00
Nicky LeachandPaperclip 4813ed3f0c fix(db): harden embedded Postgres test start with bounded retry (#10540)
## Thinking Path

> - Paperclip is the open source app people use to manage AI agents for
work
> - The database layer uses embedded Postgres for isolated test runs
> - A port probe can fail when another process takes the same port
before Postgres binds it
> - That race can make a test fail even when the code under test is fine
> - This pull request adds bounded retry and clearer error text to the
embedded Postgres start path
> - The benefit is more stable tests and faster diagnosis when startup
still fails

## Linked Issues or Issue Description

No public GitHub issue exists for this change.

This PR fixes a flaky embedded Postgres test start path.
The helper can lose a port between probe and bind.
This PR retries the start with a fresh port and a fresh data directory.

Related public context:
- Refs #7259
- Refs #9769

## What Changed

- Add bounded retry around embedded Postgres initialization and start.
- Stop each failed attempt and remove its data directory before the next
attempt.
- Capture Postgres output in the thrown error so the failure is easier
to read.
- Add unit coverage for retry success, retry exhaustion, and the
improved error text.

## Verification

- `pnpm --filter @paperclipai/db exec vitest run
src/test-embedded-postgres.test.ts src/embedded-postgres-error.test.ts`
- `pnpm --filter @paperclipai/db exec vitest run`
- `pnpm --filter @paperclipai/db exec vitest run` passed in the worktree
after the change.
- `worktree.test.ts > quarantines copied live execution state in seeded
worktree databases` passed.
- A real cluster loop of 100 starts passed with 0 failures.

## Risks

- The retry can hide a real startup fault until the fifth try.
- The bound keeps the wait short, and the final error still shows the
captured Postgres log.
- This change only affects the embedded Postgres test start helper.

## Model Used

OpenAI Codex, GPT-5, tool-use enabled.

## Checklist

- [x] I have included a thinking path that traces from project context
to this change
- [x] I have specified the model used (with version and capability
details)
- [x] I have checked ROADMAP.md and confirmed this PR does not duplicate
planned core work
- [x] I have searched GitHub for duplicate or related PRs and linked
them above
- [x] I have either (a) linked existing issues with `Fixes: #` /
`Closes: #` / `Refs: #` OR (b) described the issue in-PR following the
relevant issue template
- [x] I have not referenced internal/instance-local Paperclip issues or
links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip`
URLs)
- [x] My branch name describes the change (e.g. `docs/...`, `fix/...`)
and contains no internal Paperclip ticket id or instance-derived details
- [x] I have run tests locally and they pass
- [x] I have added or updated tests where applicable
- [x] I have updated relevant documentation to reflect my changes
- [x] All Paperclip CI gates are green
- [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups
- [x] I will address all Greptile and reviewer comments before
requesting merge

Co-authored-by: Paperclip <noreply@paperclip.ing>
2026-07-30 22:22:31 -07:00