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Author	SHA1	Message	Date
DottaandPaperclip	71cd0a2621	fix(skills): honor the current run harness checkout (#15548 ) ## Thinking Path > - Paperclip manages work for AI agents. > - The runtime claims eligible assigned tasks before it starts an agent. > - The wake tells the agent when the runtime already holds that claim. > - The legacy skill still requires another checkout in every case. > - This PR makes the skill honor the current task and run claim. > - Manual checkout and server ownership checks remain in place for other cases. ## Linked Issues or Issue Description Where is the issue? `skills/paperclip/SKILL.md`, in the scoped wake procedure and Step 5. What's wrong? The wake can say that the harness already checked out the issue. The skill still tells the agent that it must call checkout. These instructions conflict. Suggested fix Skip the second checkout only when the runtime wake explicitly confirms the claim for this issue and run. Retain manual checkout when that statement is absent or the agent selects another task. Refs #14948 for the existing shared prompt reduction. ## What Changed - Honor the explicit runtime claim in the scoped wake procedure and Step 5. - Keep context reads, status writes, deliverable handling and conflict rules. - Add checks for normal and resumed wake text and excluded automatic claims. - Retain successful checkout HTTP activity for legacy stock-task evals. Bind each receipt to the exact company, task, agent and run. Keep this observation separate from the original task grades. ## Verification - Checkout observation calibration: nine tests pass. - Focused skill, wake and database ownership tests: in progress. - Full repository build, typecheck and tests: in progress. - Planned live comparison: the existing assigned-skill document case on legacy Codex and Claude. One attempt per variant and profile. No automatic retries. The baseline and candidate share the observation code and task oracle. - Live results are pending. This draft does not claim behavioral qualification. ## Risks - Agents may misread prompt guidance. The API still enforces ownership; the text grants no new authority. - The exception is specific to the current issue and run. It does not remove ordinary legacy completion writes or authorize another task. - Activity measures successful checkout HTTP calls. Failed attempts require separate run-log inspection. Missing or mismatched observations cannot count as zero calls. - One trial per profile cannot establish general reliability, speed or cost trends. ## Model Used OpenAI Codex, GPT-6 family. The exact model build and context window are not exposed in this session. Used code editing, shell tools and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-08 06:38:09 -05:00
DottaandPaperclip	d66acb7ac1	feat: automate Slack bot app setup and installation (#15413 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Chat connectors give each agent a customer-owned bot and task-backed conversations. > - Manual Slack setup requires app creation and copying durable credentials. > - Operators need a shorter setup that an assisting agent can use safely. > - This pull request creates the app through Slack's Manifest API and installs it through OAuth. > - Durable registration state supports recovery without creating another app. > - A four-screen wizard, automatic avatar upload, and OAuth account linking reduce setup work. > - Connector settings and per-turn tool guidance support daily use after installation. ## Linked Issues or Issue Description Subsystem affected Native Slack bot setup, company secret storage, chat connector management, and agent tool guidance. Problem or motivation New Slack bots require manual app creation and copying a signing secret and bot token. Interrupted setup can create duplicate apps. The setup and management screens contain unnecessary controls. Agents also need guidance for native questions, files, thread replies, and governed Slack actions. Proposed solution Use a temporary app-configuration access token to create a customer-owned app. Save durable secrets in the vault. Bind OAuth to the initiating actor, company, endpoint, registration revision, scopes, and configured origins. Preserve manual and existing-app recovery. Link the installing user's account, send a welcome DM, and advance from saved server evidence. Keep request-URL recovery instructions available if automatic connection detection waits. Alternatives considered The Slack CLI adds installation requirements. Socket Mode changes transport. A shared Paperclip-owned app changes app ownership. These alternatives are outside this change. Roadmap alignment This extends existing chat connectors and secrets capabilities. Related public work: #14037 and #13954 cover Slack MCP prerequisites and user OAuth. No duplicate bot-registration PR was found. ## What Changed - Share one reviewed manifest builder between automatic registration and manual setup. - Add replay-safe migration 0318 and company-bound registration state with vault references and uncertain-creation recovery. - Add registration, installation, callback, and resume APIs with short-lived, single-use OAuth state. - Save installation credentials before downstream checks and preserve bot identity constraints. - Reduce automatic setup to four screens. Keep advanced app details, manual recovery, and existing-app setup. - Upload the agent avatar with the Paperclip dark background. Link the OAuth installer's account and send setup DMs. - Show agent and connector-owner avatars. Simplify settings, access, and conversation screens. - Discover joined Slack channels and enable them by default. Start a task from a bare mention and admit same-thread follow-ups. - Refresh Slack tool guidance each turn. Add native-form, file, approval, and delivery regressions plus manual model probe definitions and sanitized acceptance records. - Update deployment/database docs, OpenAPI, redaction, removal cleanup, production Storybook stories, and provider browser tests. - Merge current master and move the registration migration after its latest migration without rewriting published commits. The completed Slack success view intentionally has a single centered Done action and no Save & exit, as explicitly requested by the product owner. `DESIGN.md` records this exception; unfinished setup steps retain the aligned wizard footer. ## Verification - Passed after the master merge: repository typecheck, full build, Storybook build, design-token gates, module-boundary gates, and migration generation. - Passed: all 352 focused Slack deterministic tests and all 14 affected provider browser tests. Browser tests use controlled provider fixtures and a separate throwaway instance. - Passed on current head `c5d01e0e2`: the complete GitHub test matrix (general server, chat, all workspaces, serialized server, and Runner), all eight browser shards, typecheck/release registry, build, canary dry run, security checks, and policy gates. There are 52 passing checks and no pending or failing checks. - Greptile completed on the exact current head with 5/5 and no actionable findings or open review threads. - Local repair verification passed 93 focused tests, including same-app reinstall after revocation and rejection of consent started before revocation, the AgentMail browser journey, and repository typecheck. Local build and Storybook build also passed. The redundant local full-suite rerun was stopped after the complete current-head CI matrix passed. - Real Slack setup and agent replies were exercised in the authorized isolated test drive during the setup iteration. - The ten additional model probes were attempted with legacy `codex_local`, `gpt-5.6-sol`: five passed, two failed, and three were partly verified. Native runtime is not qualified. See `server/src/services/connectors/slack/evals/2026-10-08-acceptance.md` for evidence and limits. - Passing model probes cover native forms, downloaded file bytes, bare mentions with thread replies, explicit posts/reactions, and saved approval denial. - The controlled uncertain-write probe found wrong delivery-check IDs. The canvas fallback attempt used an invented tool name. Search pagination/native search, a private-source denied-tool receipt, and distinct board/webhook origins remain unqualified. Reviewer path: enable Chat connectors, start Slack chat setup, select an agent, enter an app-configuration access token, and approve Slack installation. Send a message to the bot and confirm that setup advances to success. Inspect settings and allowed channels. See `doc/connections/SLACK-AUTOMATIC-SETUP.md` for deployment and recovery. ## Risks - Slack app creation has no provider idempotency guarantee. A timeout after dispatch stays uncertain until the operator checks Slack. - OAuth needs a stable public HTTPS board origin. Webhook ingress may use a separate configured HTTPS origin. Workspace policy can delay installation. - Migration 0318 can replay safely on instances that applied the earlier development migration. - OAuth installation now links the installer to the initiating Paperclip user. Identity checks and company access rules still apply. - Joined channels now enable bot responses by default. Linked-user authorization and per-action approval rules still apply. - Model behavior has the documented delivery-check and canvas fallback failures. A passing CI run does not establish that every model probe passed. - Removing the connection does not delete the customer's Slack app. No new first-party telemetry is added. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser verification. The runtime does not expose a more specific authoring model ID or context-window size. The live bot probes used OpenAI `gpt-5.6-sol` through `codex_local` in legacy mode. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-08 06:33:31 -05:00
DottaandPaperclip	fc6304dfe5	feat(runner): add experimental OpenAI Dot provider over MCP Events (#15402 ) ## Thinking Path > - Paperclip manages AI agents, tasks, permissions, and execution budgets. > - Paperclip Runner gives each provider the same admitted task and tool authority. > - OpenAI Dot runs outside the local process tree and needs asynchronous work delivery. > - The merged MCP gateway supplies OAuth consent and signed event delivery. > - A personal assistant grant cannot safely stand in for an assigned agent. > - This pull request adds a separate Dot agent connection and a durable Rust Runner bridge. > - The operator can assign work to Dot and inspect its accepted work, tool receipts, and result. ## Linked Issues or Issue Description Agent or provider OpenAI Dot, as an experimental provider of the existing Paperclip Runner adapter. Why this adapter is useful An operator can assign normal Paperclip tasks to an existing Dot. Dot can read its mailbox, request work on an assigned task, use admitted task tools, and submit a result. Paperclip keeps company scope, checkout, approvals, known budget limits, and activity attribution. How the agent is invoked A dedicated `/mcp/runner` OAuth resource pairs one Dot grant with one agent. A signed MCP mailbox event wakes Dot. Dot explicitly accepts the assignment. The Rust Runner owns the durable turn and operation receipts. The first release supports self-hosted instances with a local Runner controller. Additional context This extends the merged public MCP gateway from #14846 and the assistant invitation and device-consent work from #14933. This also integrates the merged assistant tool and configuration expansion in #15380. Dot retains its dedicated agent resource and cannot receive personal configuration permission. The public assistant connection remains a personal connection. ## What Changed - Add a durable Rust Dot provider and its TypeScript Runner driver. - Add closed PRP v3 external-provider operations and native execution input v6. - Add company-scoped pairing, mailbox, assignment, and operation records. - Reuse merged browser/device consent, client metadata verification, webhook admissions, refresh, secret rotation, and warm-standby gates. - Keep Dot scopes, issuer, grants, event workers, and tool access separate from personal assistant access. - Add Dot configuration, pairing, readiness, and consent UI. Keep agent grants out of the personal Connections entry. - Regenerate the Dot-only migration after master. Preserve published gateway migrations. Make the new migration safe to reapply. - Document setup, recovery, accounting limits, evidence, and remaining account qualification. - Reverify reconnect callbacks and wake outstanding work with a fresh mailbox reference; preserve the existing assignment and operation receipts. - Clean up Dot bindings and waiting runs on OAuth revoke and refresh-token replay. Old grants cannot revoke replacement bindings. - Restore the pairing reference when an unsaved agent form is reopened; document board-only pairing routes in OpenAPI. - Accept a clean Rust exit after the acknowledged shutdown receipt. Unexpected exits still require recovery. - Clear the cached binding after a successful revoke so a failed connection refresh cannot restore it. - Add production-component Storybook states and screenshots for pairing and connection review. All preview account data is synthetic. - Persist normalized completion, serialize Dot turns and durable work admission, and poll subscription readiness. - Serialize mailbox writes and cursor reads; retain paused fence acknowledgement without task authority. - Authorize admitted review runs without changing the worker assignee. Include the fenced assignment ID in production stop notices. ## Verification - This PR integrates master `4a8178e9c`. Dot migration `0317_messy_famine.sql` follows the published history and is safe to reapply. The merge preserves the reserved migration connection, batch-commit handling, private task checks, task monitors, and native accounting. - Local workspace typecheck, full build, and UI token gates pass. The server typecheck passes after the review fixes. Database and native executor regressions pass. - All twelve real Rust/PostgreSQL Dot integration tests and twelve Dot driver tests pass. The tests cover native document writing and finalization, durable replay, queue admission, mailbox ordering, admitted reviews, stale authority, production stop references, and paused acknowledgements. - Current head `d0e7e0626` passes all 57 checks: 53 pass and four are intentionally skipped. This includes full typecheck, build, tests, Rust Runner verification, browser E2E, release verification, and Canary Dry Run. Greptile rates this exact head 5/5. All review threads are resolved. - The full local root test run is slower than the sharded CI run and has not completed. The full CI test gates pass on the current commit. Focused local regressions pass. - Real-account pairing and event delivery on this base commit remain unqualified. Live account and setup proof are recorded in the follow-up #15414. The following screenshots use synthetic preview data. They show the production pairing component and do not qualify a real account or the full agent setup journey. ![Synthetic pairing preview](https://github.com/paperclipai/paperclip/blob/codex/dot-events-prototype/doc/screenshots/openai-dot-runner/pairing.jpg?raw=true) ![Synthetic connected preview](https://github.com/paperclipai/paperclip/blob/codex/dot-events-prototype/doc/screenshots/openai-dot-runner/connected.jpg?raw=true) ## Risks - This base adapter uses `PAPERCLIP_ENABLE_OPENAI_DOT=1` plus Public MCP and Paperclip Runner. The separate experimental-settings follow-up in #15414 replaces this environment flag with saved operator settings. - Dot does not expose provider token usage or cost. The operator must acknowledge external billing. Known Paperclip budget gates still apply. - Cancellation fences Paperclip authority. It does not confirm that Dot stopped all external activity. - Assigned skill files and third-party MCP bindings are unsupported and reject admission. There is no mounted workspace, model selector, or provider thread identifier. - Hosted agent-broker and remote controller deployments are not qualified. - The new migration follows the merged master history. Existing prototype databases still need the normal master migration history before this Dot-only migration. ## Model Used OpenAI Codex, based on GPT-6. The exact deployment ID and context window size are not exposed in this session. Capabilities used: reasoning, repository editing, code execution, and test inspection. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #123` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-07 19:11:50 -05:00
Devin FoleyandPaperclip	cd40ebb95b	Preserve ACP bridge terminal evidence before disconnect (#15478 ) Drain terminal frames through backpressure and record bounded terminal evidence without waiting for log persistence. Guard later events and input failures against writes after socket end. Validated with 217 focused tests, full typecheck/build, independent review and green CI with Greptile 5/5. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-07 13:01:22 -07:00
DottaandPaperclip	a6306ba606	feat(runner): consolidate Cursor production integration (#15075 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native Runner keeps provider sessions under company authority, approvals, budgets and durable recovery. > - Cursor work was spread across candidate branches. The published branch lacked later plan, permission and cleanup fixes. > - Production also needs public installation and matching runtime assets for local and Daytona execution. > - This pull request consolidates Cursor onto current mainline recovery behavior and completes that installation path. > - The installed v11 release passed focused local and Daytona qualification after the generic mode and lifecycle cleanup. The later model-selection correction and current mainline merge produce v14 artifacts that need matching release qualification. > - Cursor admission is enabled in source; publish only an artifact combination with matching qualification. Native AskQuestion and complete per-run dollar accounting remain excluded. ## Linked Issues or Issue Description Refs: #14435, #14631, #14669, #14699, #14724. This completes the Cursor implementation by @cryppadotta from combined source `22c78242a4e0c2369fecf0c2dc4e7600fbad6706`. It preserves newer mainline recovery, completion and warm-directory behavior. Pi and Copilot remain gated. ## What Changed - Generate named Rust and TypeScript ACPX release profiles from one manifest. Share runtime pins with packaging and server verification. Preserve vendor runtime versions; bind the updated ACPX patch to Cursor profile v14 and reject stale generated declarations at build/typecheck. - Remove ACPX model allowlists, including the former Codex and Pi restrictions and the duplicate developer test-drive gate. Send any explicit model ID unchanged to its provider and verify the effective selection before prompting. The bundled ACPX package forwards unlisted IDs, rejects mismatched acknowledgements, and restores the exact selection after session load. It does not expand Cursor model aliases. Provider rejection, mismatch, or missing model controls fails without a fallback. Model examples live in evaluation fixtures, outside runtime declarations. - Add pinned Cursor execution, contained instructions, exact model verification and Agent/Plan/Ask modes. - Carry an opaque generic `mode` identifier in shared native execution, sidecar, Rust and recovery contracts. The provider adapter owns supported modes, defaults, native translation and acknowledgement. - Keep native RPC recognition, accepted-plan interpretation and permission evidence behind provider adapters. Shared settlement and recovery verify normalized facts and their committed evidence. - Replace the Cursor-only warm-attachment branch with a runner-owned capability. Only Cursor opts into it. Move profile compatibility and optional usage parsing into provider metadata and adapters. - Write generic plan-wait receipts. Read exact historical Cursor receipts through a separate compatibility decoder. Reject mixed formats and preserve existing authority checks. - Carry native plans, semantic questions, todos, child activity, permission identities and partial usage diagnostics through the Runner. - Preserve durable response delivery, cancellation, warm ownership and process retirement. - Finish accepted planning runs successfully. Keep their tasks open for explicit direction. Acceptance does not start implementation. - Ship `paperclipai runtime setup cursor` and its provisioner through the public package. npm installation does not download Cursor. Setup uses the OS account's closure-keyed cache so system-wide npm packages can remain read-only. Run it as the Paperclip service account. - Include Cursor in normal provider packs and Daytona images for macOS ARM64/x64 and Linux x64. - Reject stale release packs by source revision and current ACPX/Cursor pins before assembly writes files. Verify current Cursor version/profile/closure again at runtime. - Ship all three daemon targets and the expected Linux image-pack identity. A macOS controller uses its packaged Linux daemon for Daytona. Image mismatches fail before provider launch. - Use the vendored Runner boundary for installed readiness probes. Verify the actual installed Cursor probe. - Verify compiled public Daytona plugins and their release versions in installed smokes. - Record exact artifacts, the acceptance matrix, retained failures, supported capabilities and rollback behavior in the [readiness report](https://github.com/paperclipai/paperclip/blob/codex/cursor-production-readiness/doc/plans/2026-10-03-cursor-production-readiness.md). ## Verification - Current head `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037` merges mainline `faa8e452c73bae5e044dd6379179a00106abb131`. It keeps Cursor plan and cancellation guards alongside mainline historical-question filtering. The evaluation catalog includes both Cursor and expanded adapter accounting cases (683 total). Recursive typecheck, full build, 696 lifecycle/recovery tests, 45 fixture tests and fixture typecheck passed. Current-head CI passed: 56 successful checks, one neutral and four skipped. [Complete CI](https://github.com/paperclipai/paperclip/actions/runs/37557996535). The fresh Base Greptile review is 5/5 on this exact head, with 304 files reviewed, zero new comments and zero unresolved threads. The user authorized overriding the CODEOWNER review gate after checks passed; no failing checks are overridden. Prior results below retain their own head identities. - Corrective head `3d2b168366258036f6b6a6fccb382c49138cc601` fixes the post-merge Apex finding. Automatic-review and new-evidence reconciliation preserve pending child results and recheck delivery under the status lock before completing. Account repair now excludes unrelated secret consumers and requires the failed agent's identity. Regression coverage includes the commit race, delivery statuses, current-run/current-intent exclusions, repeated reconciliation, both database reconciliation paths, and credential consumer boundaries. All 184 affected tests, server typecheck and server build passed. Current-head Base Greptile review is 5/5, with 304 files reviewed, zero new comments and zero unresolved threads. Current-head CI passed: 56 successful checks, one neutral and four skipped. [Complete CI](https://github.com/paperclipai/paperclip/actions/runs/37535994724). This Base review is distinct from the earlier Apex review. - Merge head `5957c257a` reconciles mainline `b508a05c4`. It preserves both accepted-plan waits and pending-child-completion checks, current provider selectors, task-creation response identities, and mainline ACPX missing-file handling. The combined patch is bound to Cursor profile v14; historical records keep their original identities. - Merge head `5957c257a` passed recursive typecheck, full build, 43 installed ACPX/package contracts, 107 provider UI and plan/recovery tests, 593 database-backed lifecycle tests, 49 profile/native contract tests, 45 Product E2E fixture tests, fixture typecheck, token gates, three provider-free browser task-creation cases, and Runner conformance/replay checks. Its complete CI passed (55 successful checks, one neutral and four skipped), while Apex returned 2/5 with a child-delivery finding addressed below. - The local full-suite attempt again failed the unchanged Git streaming test (360-second timeout) and was stopped. The concurrent local Rust attempt failed four unchanged Codex process/deadline tests; all four passed serially without code changes in 7.29 seconds after removing the competing test load. These failed commands are retained and are not reported as full-suite passes; the fresh Linux CI runs are tracked separately. - The previous head `907bdb2a2778c7ffeb4a662a91460c9d1ddfc9c5` earned Apex 5/5 with zero comments after fixing all three findings: per-user install cache, stale release-pack rejection, and public Linux smoke account/home handling. Its real built installer passed from read-only public packages on macOS ARM64 and Linux x64. All 137 release-registry checks and 64 ACPX package contracts passed. That review does not cover this mainline reconciliation. - Prior `beadd3654` passed the full CI matrix; its one unchanged chat test failure and successful single retry remain in the [CI history](https://github.com/paperclipai/paperclip/actions/runs/37521449327). Historical results below remain attributed to their original builds. - Fixture follow-up `dd59d7e82b103a88b7cbd7d2c38b612c0fbbff7a` removes provider-specific model choices from generic offline ACPX tests. The fake sidecar preserves the model and session identity selected at open through suspension. Affected verification passed: 106 Rust tests and 73 TypeScript tests. This commit changes test code only; the production-code checks below retain their recorded identities. Its CI and Greptile review later passed; those results belong to that historical head. - Model-selection cleanup `9a070808b48960a41fdfd369ae0636b95af82459`: 252 focused Runner tests passed (six platform skips), covering all six ACPX agents, native model acknowledgement, rejected selections, installation integrity and recovery identity. The merged branch passed recursive typecheck, full build, token gates, server admission (19 tests), and the Product E2E catalog (45 tests). The acceptance catalog passed all four tests. The full Rust suite passed: 643 tests, 2 ignored. It verifies sidecar acknowledgement of unlisted models and rejection of model mismatches. The final commits only update Rust tests; production sources match the verified build at `65ec3279ac50185e3cda109b5cfd9b4f56105de0`. No new paid provider calls were made. - The merge preserves both Cursor and the new mainline public-MCP fixture cases. Auto-merge remains disabled; the latest follow-up status is recorded above. The local `pnpm test:run` attempt hit the unchanged Git streaming test's 300-second timeout and was interrupted before merging mainline. The broad Runner attempt found obsolete single-model assertions plus three macOS fixture-path failures caused by a `/private/tmp` override. The assertions are corrected; affected TypeScript checks passed with the standard macOS temporary directory, and the complete Rust suite passed. Neither interrupted command is a full-suite pass. - Earlier declaration-cleanup head `6f4a5e9e2` passed recursive typecheck, build, Rust and focused tests. Its CI later exposed a test expecting duplicated Grok digest literals. The current source fixes that assertion to compare launcher bytes with the shared manifest. Historical successes and failed attempts are retained; no new live provider qualification is claimed. - Previous head `e75fde6098b0ddd8cec765bfb6ecaeecb88a26a6` passed complete CI (56 successful checks, one neutral, four skipped) and Greptile 5/5. [Historical complete CI](https://github.com/paperclipai/paperclip/actions/runs/37489112305). Those results are not claimed for the cleanup head. - Frozen live application: `d7b696f9b8f79095233e9e3d56d23e6a6018dd48`. Public package version: `0.0.0-cursor-verify.3d0c9b7761c6`. The declaration cleanup preserves release pins and does not relabel that tested artifact as a build of the new source. Mainline through `e34abee670` was reconciled while preserving accepted-plan waits, provider-capacity handling, and both Cursor and public-MCP fixtures. - Clean normal installation, explicit Cursor setup and daemon resolution passed on macOS ARM64, macOS x64 under Rosetta, and Linux x64. npm lifecycle hooks ran without silently downloading Cursor. - Historical v11 live matrix: 18/18 passed with cleanup (nine local, nine Daytona) after the generic mode and lifecycle cleanup. The campaign has 23 attempts; all five failures and their diagnoses remain recorded. Exact case identities, hashes and limits are in the readiness report. All provider calls are real, use the explicit Luna model and company-bound credentials, and run without qualification or runtime-asset overrides. - The immutable Daytona image is `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:d6259b6bba094702c13fc2283bd85550849c1c53145b656fb2746778f9fa1747`. The public Daytona plugin is installed independently and its version is checked. - Recursive typecheck, full build, token gates and Runner contract/conformance/replay checks passed on the frozen application. Its complete Linux CI suite passed. The duplicate local full-suite command was incomplete after timing failures; affected repeats passed, but that command is not reported as a clean pass. - Qualification fixtures passed typecheck, 1,675 Vitest tests (one skip), 128 Node checks, three provider-free browser tests, and 150 focused lifecycle tests after the final diagnostic correction. The affected legacy Cursor command file also passed all five tests after removing its shorter 10-second override; it now inherits the suite’s standard 15-second timeout. Greptile is 5/5 on `e75fde609` with no unresolved review threads. CI results above are recorded separately from historical build results. ## Risks - Cursor v14 includes the updated ACPX dependency patch and release identity. The v11 live matrix and image below remain historical evidence. They do not certify new v14 package/image artifacts. - ACPX accepts models beyond the qualification fixtures. Availability and entitlement depend on the provider. Successful configuration is not a claim of live qualification for every model. - Shared mode is an opaque identifier. Provider adapters own its meaning. Incompatible historical sessions remain fenced; exact committed plan waits and task history remain inspectable. - Native AskQuestion is excluded. Paperclip semantic questions are supported. Authoritative per-run dollar accounting is unavailable; partial counters remain diagnostics and unknown cost is not zero. - Image input, detailed native diffs, deeper child transcripts and native plan-file export remain follow-ups. - macOS x64 has clean-install and daemon-startup proof under Rosetta, not a separate live campaign on Intel hardware. - Release only the tested package/image combination. Merging this PR does not publish npm packages or deploy that image. Later builds need their own release verification. Rollback disables new Cursor admission while preserving records and recovery inspection. - A model can fail an exact instruction: one cancelled-plan attempt returned the wrong summary marker despite correct cancellation. The unchanged repeat passed; both results remain in the report. > ROADMAP.md was checked. This completes existing native Runner/Cursor work; it does not add an independent core feature proposal. ## Model Used OpenAI Codex, GPT-6. The exact serving variant and context window are not exposed in this session. The agent used reasoning, repository inspection, code execution, protocol tests and browser-backed Product E2E tools. Cursor acceptance uses the explicit `gpt-5.6-luna[context=272k,reasoning=medium,fast=false]` model. That is the evaluated provider model. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — affected suites passed; full CI and the retained local failed attempts are recorded separately above. - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green — 56 successful checks, one neutral and four skipped on `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037` - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — fresh Base review passed on `f7ec5cc1f0e30c62a829c016ff2013a2a9d79037`; zero new comments and no unresolved threads. The earlier Apex finding remains fixed. - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-06 20:48:15 -05:00
Devin FoleyandPaperclip	eab93fd4a0	fix: checkpoint adapter usage and preserve unknown prices (#14991 ) Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-06 18:16:18 -07:00
DottaandPaperclip	b508a05c43	feat: add internal agent complaints and suggestions (#15367 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use legacy skills or native runner tools to work on tasks. > - Those agents can encounter friction that does not belong in the task thread. > - A complaint should preserve the raw reaction. A suggestion should describe an improvement. > - This pull request adds attributed local storage and both submission paths. > - Agents can submit feedback once and continue their primary work. ## Linked Issues or Issue Description Subsystem affected Server, database, shared contracts, runtime skills, and native runner tools. Problem or motivation Agents have no default internal channel for incidental complaints and suggestions. Sending this feedback through task comments adds noise and can alter task workflows. Proposed solution Store free-form feedback in the current instance database. Derive agent, run, company, and task attribution from active authority. Provide default legacy skills and provider-neutral native actions. Keep the instructions close to Warp's MIT-licensed originals. Alternatives considered Task comments and external Slack delivery add unwanted side effects. Mandatory suggestion fields and short editorial limits would discard useful feedback. This release has no listing API, UI, read tool, automatic triage, or external forwarding. Roadmap alignment This is a maintainer-requested addition to the existing runtime skills and runner tool paths. It does not duplicate a listed roadmap milestone. Searches for complaint tooling, suggestion-box, and agent commentary found no overlapping public PR or issue. ## What Changed - Add the company-scoped `agent_commentary` table, shared validation, and idempotent migration `0310`. - Add one transactional service and the agent-only POST route. Validate active authority before writes or replay. Redact known credentials. Commit a content-free audit with each new record. - Add `submit_complaint` and `submit_suggestion` to standard, ask, and planning modes. Keep review, revocation, and completion restrictions. Store replay identity on the commentary row. - Mount `complain` and `suggestion-box` by default for legacy agents. Bundle a dependency-free Node.js stdin helper in the operational skill and allow its POST through the sandbox bridge. - Preserve Warp's complaint voice and suggestion guidance, with attribution and local transport adaptations. Keep source attribution and MIT notices in each skill's LICENSE, outside runtime instructions. - Document custom-runtime HTTP use and database inspection. Add real-database tests and a repeatable live Codex smoke for local and Daytona execution. - Pin the lagging-source migration fixture before the identity-repair migration so later migrations preserve its regression coverage. ## Verification - Personally ran real Codex submissions in all four environments on 2026-10-06. Local runs passed at 20:35 UTC. Daytona native passed at 20:31 UTC; Daytona legacy passed at 20:33 UTC. Each stored exactly two rows with company, agent, run, and task attribution, wrote the continuation marker, exited zero, created no task comments, and left task status unchanged. Each recorded two content-free activity entries. - Daytona used production provider hooks, real remote execution and file transfer, the legacy queue callback bridge, and native private WebSocket ingress. The current Linux runner was built from `abf47b595`, staged, and verified against controller contracts. Both sandboxes were confirmed deleted. This is a focused feedback transport smoke; it does not claim full Runner E2E catalog or browser qualification. - The immutable base image and Linux binary digest are recorded in [the verification documentation](https://github.com/paperclipai/paperclip/blob/codex/agent-commentary/doc/agent-commentary.md#verification). The smoke script can save content-free JSON evidence. No credentials or feedback bodies are in these reports. \| Environment \| Runner \| Complaint row \| Suggestion row \| \| --- \| --- \| --- \| --- \| \| local \| legacy Codex \| `59413a00-1de2-4bb1-bcc6-9c4b54c64aa6` \| `3db2364d-3e15-4f47-846f-875d3902999d` \| \| local \| native Codex \| `5da22b5f-41df-4de5-8ba0-d9345ab01267` \| `2d5abe17-dd41-403c-a5ee-4729f2d58921` \| \| daytona \| legacy Codex \| `27c9d0aa-8477-409f-9da0-e8ffa48dee50` \| `209681c9-d1e9-4ce1-999e-48fa07692389` \| \| daytona \| native Codex \| `6eb001bb-4bcf-43f7-8717-f662f53dc7c3` \| `77c383d8-a997-49e5-a33e-25c70e15c0b2` \| - Run the local check with `node cli/node_modules/tsx/dist/cli.mjs server/scripts/verify-agent-commentary-live.ts`. The documentation gives the Daytona invocation. Both use disposable instance databases and normal Codex provider usage. - Repository `pnpm -r typecheck` and `pnpm build` passed after the test extension. The build includes runner generation, contracts, and replay checks. The smoke scripts also passed a separate TypeScript check. The lagging-source migration regression passed. All equivalent current-head Vitest CI shards passed. The local monolithic `pnpm test:run` invocation was stopped after CI supplied that coverage; it did not complete locally. - Focused tests cover company isolation, spoofing, revoked credentials, stale ownership, post-finish rejection, concurrent replay, conflicting keys, atomic rollback, and deletion through existing services. Boundary tests cover empty text, Unicode, text beyond 8,000 characters, and the 524,288-character ceiling without truncation. Mounting tests cover Codex, Claude, and sandbox staging. Helper tests cover standalone Node execution, stdin, invalid UTF-8, redirects, HTTP failure, and its deadline. Privacy and bridge tests cover successful and rejected requests. - Instructions were compared with Warp's originals. MIT notices and source credits live only in LICENSE files. Native tools preserve truthful disclosure when asked, without routine announcements. - [Full CI](https://github.com/paperclipai/paperclip/actions/runs/37508559190) and Greptile 5/5 passed on the earlier feature commit `5209c3501`. The later head found the migration-fixture assumption fixed in this update. On `8a4965164`, all 55 check contexts passed after one browser shard rerun. Its initial reviewer signoff failure also passed an isolated local browser run (1 test). Greptile scored that head 5/5 and identified one smoke cleanup gap. `6ecbafb0b` fixes failed-acquisition cleanup with four passing tests and a passing smoke-script typecheck. Fresh CI is pending for this final test-only fix. No commentary production code changed during verification. ## Risks - Feedback is internally attributed. It is not anonymous. Existing redaction removes known credentials, but agents must still omit sensitive content. Normal provider transcripts can include their submitted arguments. - Default skill availability changes for existing legacy agents. Runtime policy filtering still applies. The helper uses the existing Node.js runtime with no extra dependencies; custom runtimes can call the HTTP endpoint. - Feedback is removed with its run, agent, or company. Task deletion clears only the issue pointer. Normal database backups include the table. - The migration is additive and has no backfill. Writes serialize on the active run for replay consistency. No server suggestion quota is imposed. ## Model Used OpenAI `gpt-6-astra` through Codex, with `xhigh` reasoning effort and a reported 258,400-token context window. Capabilities used: repository inspection, code execution, and live runtime verification. No subagents were used. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-06 16:14:06 -05:00
DottaandPaperclip	e38d6d16b6	feat(connections): add advanced provider setup and live browser qualification (#15341 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Users connect accounts and choose an agent harness and model. > - The runtime change in #14970 supports custom providers on those connections. > - Normal setup must stay simple while advanced users can choose a compatible gateway. > - Shared connector rows and access controls keep these choices consistent. > - This pull request refines the agent setup UI and adds review stories and repeatable browser qualification. > - The qualification checks real tools and downloaded outputs, not only a successful run status. ## Linked Issues or Issue Description Refs #14970, #37, #13083, #14104, #14565, #12692. The core implementation in #14970 is merged. This branch incorporates its squash commit and targets `master`. Both PRs contain our implementation. #14016 is a reference only and is not a dependency. This PR has 96 changed files. ## What Changed - Complete model-provider connector presentation beside other connectors. Each row uses the existing Connect action and connection list. Tags are stored without category UI. The base PR includes the provider forms and routes. - Show persistent Subscription, API Key, and Advanced choices. Label Advanced as Custom Gateway. Reuse provider logos, connection lists, and permissions controls. Default access to the organization and all agents when permitted; keep narrowing controls under Advanced. - Keep Configure reachable before subscription sign-in, so users can select a supported environment when the default cannot sign in. Testing and saving still require a connection. Show the execution environment in Configure. Preserve the confirmed Connect choice. Editing a method, credential, saved account, or advanced choice requires that current choice to connect before testing or saving. Use matching model and thinking-effort dropdowns and retain connection icons in selected values. - Preserve the new harness model default when switching an existing OpenCode agent to Codex or Claude, and resolve user-selected model names with the effective harness. - Load popular OpenRouter models through the shared connection-model discovery path. Keep explicit model lists and manual model entry available. - Group onboarding, connection setup, agent runtime, management, recovery, and production-component stories under AI Connections / Provider routing. - Add an explicit-only provider-connections browser suite for managed local or existing local/staging targets. Use private browser profiles and credential handoffs. Support human-assisted subscription sign-in without sharing passwords or tokens in reports. - Verify persisted connection identity, runtime probes, tool execution, exact artifact bytes, completion, and context-dependent follow-up. Retain source/model provenance, cost bounds, closed error diagnostics, original failures, and cleanup evidence. - Add Gemini startup-model and skill-root fixes, Grok private-history detection, ACP filesystem regression fixtures, selected-workspace handling for local Hermes, and artifact-helper workspace fallback. - Keep managed Grok runtime homes disposable. Remove host-side transcript retention/restoration because private file modes do not isolate same-user agent processes. Ignore earlier development archives and use a fresh task handoff when history is unavailable. Verify the absence of restored transcripts with a separate same-user process. - Capture stopped-run diagnostics before deleting an attached-company fixture agent. Track creation and owned sign-in receipts; revoke only this attempt's accounts and never adopt a concurrent campaign's newly created account. Preserve failure signals and final status through cleanup. - Require the requested environment in the saved agent and every run, including follow-ups. Reject a forced incompatible target. Keep one cancellation state through startup, every cell, reporting, and teardown for SIGINT, SIGTERM, and SIGHUP. Stop further paid cells after interruption. Document qualification limits. ## Verification - Current head `b3bb3e94d577d43d9965a6b9daba039f599b2e49` includes master `d9f600043`. The security fix in `a758fde31` passes full workspace typecheck, production build, and 119 connection/Grok regressions. The unchanged UI passes all 126 configuration/model-discovery tests and token gates. The final published-guide correction passes Grok adapter typecheck. Earlier head `eebd8225c` passed the complete deterministic runner suite (1,404 Vitest tests and 128 Node tests) and all CI jobs. Current-head CI run `37520147514` passed all 47 jobs, including the full sharded Vitest and browser matrix, production build, and canary dry run. All 55 checks completed: 53 successes and two expected skips. The current-head security scan passed, Greptile is 5/5, and no review threads remain open. - A separate same-user process reproduced reading a restored Grok transcript before the security fix. The regression now finds no transcript. Existing fresh-session fallback and ordinary session metadata behavior pass. - The final account-choice and cleanup fixes pass 85 setup tests and 26 qualification-harness tests. Regressions verify that editing a connection invalidates confirmation, Configure remains reachable before sign-in, diagnostics are captured before fixture deletion, and concurrent campaigns cannot adopt or revoke each other's accounts. UI and E2E typechecks pass. - The Storybook build and actual Chromium production-component stories passed during this change. Review the neighboring AI Connections / Provider routing stories, regular connector rows, three connection modes, model discovery, and the single execution-environment control in Configure. - Cancellation smoke verified authenticated cleanup before browser close for SIGINT, SIGTERM, and SIGHUP. Regressions cover interruption during startup and reporting, missing-file ACP resource errors, and preserved permission denials. Both ACP runtime versions and 54 ACPX/Grok regressions passed. The deterministic connection-intent browser suite passed two tests. - Historical local qualification retained 43 passing API/gateway cells out of 46, with downloaded outputs and follow-up receipts. These attempts span earlier builds; they do not qualify this exact commit or staging. Subscription combinations, Gemini overloads, and the unresolved follow-up failure remain recorded rather than counted as passing. - Use `pnpm test:e2e:runner -- --list --suite provider-connections` to inspect the matrix. Follow `tests/runner-e2e/PROVIDER-CONNECTIONS.md` for credentials, target URL, sign-in assistance, budget, evidence, and cleanup. Paid live tests remain opt-in. ## Risks - The core implementation in #14970 is merged. This PR adds no database migration of its own. - Subscription login needs an interactive provider session. Dedicated accounts and staging qualification remain follow-up work; this PR does not certify every login combination for production. - Managed Grok transcript resume is deferred until provider history has an OS isolation or authorized broker solution. Follow-ups start fresh with Paperclip task context; earlier live Grok results do not qualify this behavior. - Gemini CLI 0.58.0 has an upstream ACP new-file error conversion defect. Live overloads and one unresolved follow-up timeout remain recorded. The stock CLI is unchanged, and those cases are not marked as passing. - Real-provider tests spend credits and use private credential/evidence directories. The launcher requires explicit selection and checks target ownership. It must not attach to a developer's database by accident. - OpenClaw Gateway, Hermes Gateway, Claude Managed, AWS AgentCore, Process, HTTP, and legacy ACPX local remain outside custom provider setup. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, code execution, and browser testing. The exact deployment model ID and context window size were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-06 15:21:22 -05:00
DottaandPaperclip	a590ab769d	Give managed agents persistent cryptographic identities (#15352 ) Give agents persistent Ed25519 identities encrypted with the existing instance master key. Create keys transactionally for new agents and lazily before supported managed runs, expose public identities in the API and agent UI, and protect private material during runtime delivery and output persistence. Preserve identities in recovery backups while giving imported and development-cloned agents fresh keys. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-06 13:57:03 -05:00
Barış ÖZDEMİR	bf14f803d5	fix(ssh): transport project repositories as their own git checkouts (#14782 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A project can attach more than one repository. The task workspace keeps the selected repository at its root and puts the other project repositories under `.paperclip-repositories/<name>-<key>`, each with its own `.git` > - Agents can run on an SSH execution environment. Paperclip copies the task workspace to the remote host before the run and restores it after the run > - The SSH copy excludes `.git` at every depth, but the restore baseline excludes it only at the workspace root > - So the other project repositories reach the remote host without Git, and the restore then deletes their `.git` directories on the Paperclip host > - The next run of the same task fails during workspace setup, and the agent cannot commit to those repositories on the remote host > - This pull request transports each project repository as a Git workspace of its own, the same way the sandbox path already handles them > - The benefit is that multi-repository projects work on SSH environments across consecutive runs ## Linked Issues or Issue Description Refs #11632 (SSH workspace transfer exclude list). Related SSH workspace PRs: #14233, #14428, #14472. I found no issue or PR for this bug. What happened? A project has two repositories and its agent runs on an SSH environment. After the first run, the second repository under `.paperclip-repositories/` has no `.git` directory on the Paperclip host. The next run of the same task fails during setup with `Managed workspace path "…/.paperclip-repositories/<repo>" already exists but is not a git checkout.` On the remote host, `git` inside that repository resolves to the parent repository. Expected behavior Each project repository reaches the remote host as a Git checkout with its local changes. Remote commits and edits come back after the run. The next run of the same task starts normally. Steps to reproduce 1. Create a project with two repositories. 2. Configure an SSH execution environment and make it the agent's default environment. 3. Assign a task to the agent and let it run once. 4. Look at `.paperclip-repositories/<repo>` in the task workspace: `.git` is gone. 5. Wake the agent on the same task again: the run fails with `setup_failed`. Paperclip version or commit Reproduced on `v2026.916.1` and on `master` (`5edf55d73`). Deployment mode Self-hosted (Docker), authenticated, with an SSH execution environment. ## What Changed - `ssh.ts`: `prepareWorkspaceForSshExecution` lists the project repositories under `.paperclip-repositories/`. It applies the discovery rules of `readGitWorkspaceSnapshot`: each entry must be a directory with a valid name and must be a Git repository root, else the prepare step fails before any transfer. - `ssh.ts`: the anchor copy leaves `.paperclip-repositories/` out. Each project repository then gets the same import, sync, and deleted-path steps as the anchor. The remote anchor repository ignores `/.paperclip-repositories/`, as the local checkout does. - `ssh.ts`: `prepareWorkspaceForSshExecution` returns the transported repositories (the field is present only when there are repositories). `restoreWorkspaceFromSshExecution` accepts them with their baselines. It validates each path and baseline first, then restores the repositories before the anchor and stops at the first failure, as the sandbox restore does. - `remote-managed-runtime.ts`: the anchor baseline excludes `.paperclip-repositories/`, and each project repository gets its own baseline for the restore merge. - `ssh-fixture.test.ts`: regression tests for two consecutive managed runs and for the direct restore path, on a workspace with a project repository (commits, dirty edits, and a deleted file). Two tests for the new validation. - `docs/guides/board-operator/execution-workspaces-and-runtime-services.md`: one line about project repositories in the SSH round trip. ## Verification - The new regression test fails on `master` (`expected 'backend initial\n?? ../\n' to contain 'frontend initial'`) and passes with this change. - `PAPERCLIP_ENABLE_DARWIN_SSH_ENV_LAB=1 npx vitest run packages/adapter-utils/src/ssh-fixture.test.ts packages/adapter-utils/src/remote-managed-runtime.test.ts`: 32 passed, with the sshd fixture running. - `tsc --noEmit` passes for `packages/adapter-utils` and `server`, and `pnpm -r typecheck` passes for the other workspaces. The Rust step of `@paperclipai/paperclip-runner` did not run locally because `cargo` is not installed. - `node ./scripts/check-no-git-push.mjs` and `pnpm check:module-boundaries` pass. - `pnpm test:run` did not complete locally. Before it stopped, 5 tests failed: 2 in `server/src/__tests__/workspace-runtime.test.ts` and 3 in `server/src/__tests__/company-skills-service.test.ts`. The same 5 tests also fail on the base commit `5edf55d73` without this change. CI runs the full suite. - `pnpm build` passes for all workspaces except `@paperclipai/paperclip-runner` and `server`, because their build compiles the Rust runner binary and `cargo` is not installed. `tsc --noEmit` passes for `server`. - Manual test on a self-hosted `v2026.916.1` instance with the same change applied: a project with two repositories and an SSH environment. Two runs on the same task passed. After each run, the second repository keeps its `.git` on the host. On the remote host it is a Git checkout, and the remote anchor ignores it. ## Risks - Low risk. Workspaces without `.paperclip-repositories/` take the same path as before, and the return value is unchanged for them. - A workspace with an invalid entry under `.paperclip-repositories/` now fails the SSH prepare step. The sandbox path already rejects such entries. - If one repository fails to restore, the restore stops, as in the sandbox path. The remote run directory keeps the agent's work. - Each project repository adds one bundle import and one restore per run. The time grows with the number and size of the repositories. - Out of scope: other nested `.git` directories (for example a vendored checkout inside a repository) keep the existing SSH behavior. ## Model Used - Provider and model: Anthropic Claude Opus 5.5 (`claude-opus-5-5`), in Claude Code. - Capabilities: extended thinking, tool use, and code execution. The context window size was not recorded. - Use: the model investigated the bug, wrote the change and the tests, and ran the checks. A separate Claude Code agent reviewed the diff. The author reviewed the change. The manual test ran on the author's self-hosted instance. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-10-05 22:21:00 -07:00
Devin FoleyandPaperclip	efac8ff2f4	Add bounded Git integration restore diagnostics (#15291 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox runs must restore their workspace before finalization can succeed. > - Restore diagnostics identify the failed phase and operation. > - A Git integration exit code can still describe several different failures. > - This pull request adds fixed command labels and supported failure classes. > - Operators can distinguish these failures without collecting private Git output. ## Linked Issues or Issue Description Refs #15005. This branch includes merged #15268. It labels that change's locked ref transaction and nested branch probe without changing their behavior. What happened? A failed Git integration can report only `git_integration`, `unknown`, and an exit code. That evidence does not identify the failed command. Some Git versions also return exit 1 for both a merge conflict and an invalid object. Expected behavior Record a fixed command family and a supported failure class. Keep unknown cases as `unknown`. Exclude command arguments, process output, paths, repository URLs, filenames, and ref names. Steps to reproduce The tests create local repositories with conflicting commits, a missing object, and an expected-old ref mismatch. They call the real Git operations and inspect the resulting diagnostic. No hosted workspace or external provider is used. Paperclip version or commit Base: `e99854249c`. Deployment mode Built from source. The diagnostic applies to sandbox workspace restore. ## What Changed - Label Git integration calls with a closed command enum. Preserve arguments, options, errors, and retry behavior. - Recognize supported object and ref errors and OS permission codes. Require both exit 1 and completed tree output for a merge conflict. - Carry the closed fields through the existing restore receipt, saved adapter result, and Sentry projection. Revalidate saved metadata before projection. - Test nested wrappers, parallel failures, reused errors, handled probes, result settlement, and privacy with the real Sentry SDK. - Document the field contract and its limits. ## Verification - Eight focused suites pass: 295 tests. These cover Git sync, restore diagnostics, result settlement, teardown, sandbox runtime, failure projection, the real Sentry SDK, and native warm-workspace Git history. - `PAPERCLIP_REQUIRE_SENTRY_TEST_SDK=1 pnpm exec vitest run packages/adapter-utils/src/workspace-restore-diagnostics.test.ts packages/adapter-utils/src/workspace-restore-result.test.ts packages/adapter-utils/src/git-workspace-sync.test.ts packages/adapter-utils/src/workspace-restore-teardown.test.ts packages/adapter-utils/src/sandbox-managed-runtime.test.ts server/src/services/__tests__/run-failure-diagnostics.test.ts server/src/__tests__/run-failure-sentry-real-sdk.test.ts server/src/__tests__/native-workspace-sync-history.test.ts` - Local checks use Node 24.21.0 and the pinned pnpm 9.15.4. The optional Sentry SDK is pinned to the declared 10.71.0 and uses an in-memory transport. - `pnpm -r typecheck` and `pnpm build`: pass on the rebased head. - The full local `pnpm test:run` was stopped before source changes when #15268 merged and required a rebase. It reported three pre-existing company-skill cache test failures on macOS. The same three cases fail on clean bases `2c43b39167` and `e99854249c` and the earlier head with `EACCES` when publishing a read-only cache directory. The relevant test, service, and cache source blobs are identical. No cache changes are included. Later local test groups were not reached. - All 54 checks pass on exact head `8448896bc6`, including the post-ready security scan, with two intentional Storybook skips. Greptile scores this head 5/5 with no review threads. Full Linux CI covers the local groups that were not reached. - Independent review found no blocker. Its diagnostics, Git workspace, and native history suites pass 115/115 on this head. - A source comparison confirms that removing only diagnostic wrappers yields the merged upstream Git integration code exactly, including ref locks, transaction protocol, arguments, options, and retry decisions. - The clean base has stale dependency overrides in its lockfile. Local installation resolved them as the existing PR CI fallback does. No manifest or lockfile change is included. - `git diff --check` and a local secrets/PII review pass. ## Risks A Git version or localized message may not match a known failure form. Such cases remain `unknown`. Up to 16 KiB of stderr and the bounded tree-ID prefix of stdout are inspected only in memory. The saved fields contain enum values only. These diagnostics do not establish workspace recovery or authorize retries. Restore decisions and Git mutations are unchanged. No schema migration is required. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, and code execution. The service does not expose the exact model deployment ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-05 17:10:05 -07:00
Devin FoleyandPaperclip	e99854249c	fix(workspaces): restore rebased sandbox history against its starting snapshot (#15268 ) ## Thinking Path > - Paperclip manages agents and preserves their work across runs. > - Sandbox execution restores Git history and files to the host workspace. > - An agent can rebase or amend its branch before it finishes. > - Restore currently treats the original and rewritten tips as concurrent work. > - That merge can conflict even when the host has not changed. > - This change uses the starting Git snapshot to accept rewritten history safely. ## Linked Issues or Issue Description What happened? A successful sandbox turn can end with `workspace_restore_failed` after the agent rebases and pushes its branch. The restore step merges the original host tip with the rewritten sandbox tip. This can recreate conflicts that the agent already resolved. Expected behavior Accept the rewritten history when the host still has the recorded starting branch and commit. Preserve concurrent host work through the existing merge and recovery paths. Steps to reproduce 1. Start a sandbox from a feature branch. 2. Rebase that branch onto an upstream commit that changes the same file. Resolve the conflict in the sandbox. 3. Restore the sandbox while the host remains on the original commit. 4. The old implementation attempts a conflicting Git merge and fails the run after the agent finishes. Paperclip version or commit Reproduced on `cab4263dc9` with a real Git rebase fixture. Deployment mode Self-hosted server with sandbox execution. Related work: #15005 records restore failure stages. #11638 preserves unrelated imported history with a graft. #10601 handles bundle prerequisites. Those changes do not distinguish a rebase from a concurrent host edit. ## What Changed - Pass the run's starting Git branch and commit into sandbox history integration. - Adopt a related rewritten tip when the host still matches that snapshot. Keep the expected-old-value ref update and bounded retry. - Verify the branch attachment inside a prepared Git transaction while Git holds its ref locks. Abort if a checkout changed the branch. - Check host and sandbox Git identity before warm reuse, including nested repositories. Restage when their tips or branches differ. - Reject host branch changes and unrelated imports after a concurrent host commit. - Retain the existing unrelated-history graft for an unchanged host and the conservative behavior for callers without a snapshot. - Export a full bundle for an intentional reset to an ancestor so restore receives the actual sandbox tip. - Add real Git and sandbox restore regressions. Document the restore contract. ## Verification - Eight Git sync, sandbox restore, and native workspace suites pass: 255 tests. - The new checkout-race and warm-reuse regressions failed before the fixes. Real Git hooks verify that prepared transactions prevent a concurrent HEAD change. - `pnpm -r typecheck` passed after rebasing onto `984f092ddf` and applying the Apex findings. - `pnpm build` passed on `f5132603d6`. - The earlier `pnpm test:run` attempt reported three `company-skills-service.test.ts` failures on macOS (`EACCES` renaming a read-only staging directory). The same failures reproduced on unchanged master. The broader run was stopped after confirming that baseline failure; it was not a full-suite pass. Those source and test files are unchanged in the current base. - [Apex review](https://github.com/paperclipai/paperclip/pull/15268#issuecomment-6002549219): 5/5 on `f5132603d6`, requested with `@greptileai apex review`. All three historical findings are addressed and all review threads are resolved. - All CI gates passed on `f5132603d6` (53 successful checks, two skipped). The signoff-policy browser fixture initially timed out waiting for a local process-agent run; its one retry passed without code changes. [CI run](https://github.com/paperclipai/paperclip/actions/runs/37387511152) ## Risks - A recorded starting snapshot now authorizes replacement of related rewritten history. A stale or changed host tip retains the concurrent-history path. Ref writes still compare the expected old commit. - Branch changes and unrelated rewrites after host advancement require recovery instead of replacing host work. - An intentional reset to an ancestor uses a full bundle. Large histories can increase transfer time in that case. - The existing directory merge rules remain in force. The fix does not resolve an earlier failed restore or replay its external actions. ## Model Used OpenAI GPT-6 via Codex, with reasoning, repository analysis, code editing, and local test execution. The exact deployment model ID and context window were not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — 255 affected tests; the broader-suite baseline failure is documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-05 16:43:15 -07:00
DottaandPaperclip	4857799a88	feat(connections): deliver saved instructions to authorized agent turns (#15216 ) Persist optional connection instructions and deliver authorized snapshots to agent execution prompts. Keep provider templates with each app definition, preserve edits and opt-outs, and replace sessions when guidance or access changes. Use shared production settings across setup and Permissions, with source visibility in agent Instructions. Add the initial memory-provider defaults and managed Honcho workspace configuration. Include migration 0298 and regression coverage for generic providers, runtime delivery, authorization, and catalog regeneration. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-05 18:16:00 -05:00
Devin FoleyandPaperclip	3b47a6befd	Record bounded workspace restore failure stages (#15005 ) Capture allowlisted restore substep and failure metadata for future diagnosis while preserving workspace recovery behavior, error identity, cleanup ordering, and privacy. Validation: exact-head Greptile 5/5, passing CI, no unresolved review threads, and a clean merge. Detailed verification and limitations are recorded in the pull request. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-10-05 10:58:32 -07:00
DottaandPaperclip	b17019e14d	fix(agents): reduce default instructions and qualify stock harnesses (#14948 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its adapters supply task context and access to Paperclip skills and tools. > - The default hire manual and shared prompts also repeat general work procedures. > - Those procedures overlap with stock provider instructions and the Paperclip skill. > - Existing E2E fixtures supply a QA manual, so they do not qualify the production default. > - This pull request reduces the generic instructions and adds real default-hire coverage. > - The benefit is less competing guidance, with inspectable evidence for preserved skills and task context. ## Linked Issues or Issue Description Refs: #14920. That merged change preserves native Codex base instructions. This PR covers the default manual, shared legacy prompts, operational skill guidance, and the narrowly approved ACP skill-discovery/session-environment repair for measured delivery and credential-persistence failures. What existing behavior does this improve? New non-CEO hires without a custom bundle and legacy task/chat startup and continuation prompts. Current behavior The shipped default manual contains 602 words. Generic task/chat prompts and ordinary resume deltas repeat work procedures already available through the harness and Paperclip skill. Proposed behavior The default manual contains only the eight-word company identity. Shared startup prompts retain identity and connection guidance. Ordinary resume deltas retain current work context without the generic execution contract. Reason and benefit Let the stock harness guide general work. Keep Paperclip-specific capabilities and independently test default hires, skills, ordered comments, and chat restart. Breaking changes New default hires receive less guidance. Existing saved manuals, explicit custom bundles, CEO templates, and specialized wake contracts retain their behavior. The obsolete includeExecutionContract option remains accepted for source compatibility. ## What Changed - Reduce the default hire manual to one sentence. - Reduce shared task/chat defaults and remove the generic ordinary-resume contract. - Keep connection guidance, auth, skills, custom prompts, and specialized wake context. - Add credential-free instruction-boundary gates and 26 explicit Product E2E cells across eight legacy/native profiles, including two focused Paperclip-storage cases. - Capture public hire receipts before providers run, then grade delivered prompts and independent task/chat outcomes. - Add an early legacy skill API recipe for saving a task document, checking the saved revision receipt and linking the document. Improve stock task/heartbeat skill-selection metadata and show a clickable Markdown UI-link example. Keep native tool completion separate. - Advertise bounded routing descriptions and exact successfully staged SKILL.md paths in legacy ACP Claude; keep full bodies on demand and preserve remote path rebasing. - Remove only the provider environment from copied persisted ACP session records, while loading current run credentials and preserving all other options/conversation state. - Regenerate both capability metadata inventories and reject stale manifests/inventories before provider admission. - Publish the original reduction and focused skill-repair comparisons, preserving all failures, automatic recovery, cost coverage and limitations. ## Verification Behavioral qualification remains pending. Original legacy ACP Claude loses the issue document only in the reduced cohort beneath an unchanged credential failure. A source-backed diagnosis finds that neither ordinary assignment reads the staged operational skill, while the runtime persists provider environment in session state. The new common repairs expose skill metadata/path and omit persisted env; strict document and credential guards stay intact. [Inspectable diagnosis and retained hashes](https://github.com/paperclipai/paperclip/blob/9f654db4541d3d002769c988f6e51fc0b08dadbd/doc/plans/2026-10-03-legacy-acp-claude-readiness.md). Current repair head `de0965984ff3edf611ae6d0e7ca5c7d5ae3947bb` incorporates master `569c7203aa24b95440682983ce7940ba1d4247bd` (merged #14961/#15007). All 222 affected adapter tests, adapter-utils/E2E typechecks, and final 96 variant/grader/retry calibrations pass. The frozen historical comparator is `c25697f4260b6f3adfea143c3ae9932e2f42986d`: 8,280 of 8,291 paths identical, exactly two production instruction paths plus nine declared unit expectations differ. The operational skill/discovery/environment repairs, selected model/profile/task/core grader/auth/permissions/retry policy are identical. Both actual launcher prepare→verify admissions pass with zero providers. [Immutable manifest and exact receipts](https://github.com/paperclipai/paperclip/blob/9f654db4541d3d002769c988f6e51fc0b08dadbd/doc/plans/2026-10-03-legacy-acp-claude-evidence/manifest.json). One original legacy ACP Claude cell per variant is authorized, with enforced single campaign attempts, 12-minute deadlines and company/agent 1,000-cent hard stops; every product recovery run/cost is counted. Actual live outcomes are pending. Current normal CI has one failed server shard and failed aggregate verify under diagnosis; other normal gates including typecheck/build/Rust/all eight browser shards pass. Fresh review completed successfully; the valid historical startup/resume masking finding was fixed with per-invocation task/chat checks and strict complete-snapshot capture, calibrated and resolved. Prior heads, failures and campaigns below remain historical evidence, not checks on this repair head. - Prior head `36aa4d81c49a1a8f6f04b1a068fae19aa901955f` is replayed on merged hiring master `862a5758ba0e88a33232c1f1fa645e85c38a3113`. All 52 current-head checks pass with two intentional Storybook skips, including repository typecheck/test/build and the browser shard. Fresh Greptile is 5/5 with zero unresolved review threads. Exact-head stock prerequisites pass 599 assertions (598 TypeScript + 1 Rust), all six gates and retained receipt verification, zero providers/source errors. Fingerprint `a7f5a22d860a88fe20cce213c6d5e0004788f32c8363930729aea4fd740ad16d`. Combined catalog/hiring calibrations pass 67 assertions, E2E typecheck and 26-cell stock discovery pass. Canonical contract/inventory checks and the later issue-derived reference calibration are retained; that reference-only follow-up is not live-qualified by earlier frozen runs. - Prior full repository typecheck/build passed. The complete local Vitest run executed 14,956 tests: 14,870 passed, 83 skipped, three timing failures. All three affected files passed unchanged narrow reruns; original failures remain retained. Current-head CI now passes the full general checks; the original local failures remain retained. - The original 24-pair default-manual/shared-prompt comparison has two new overall classic Claude/OpenCode document-delivery failures plus an additional legacy ACP Claude document loss beneath an unchanged credential-guard failure (not closed by later runs), two newly passing OpenCode ordered cases, seven unchanged failures and 13 unchanged passes. Equal 15/24 totals do not establish behavioral equivalence. [Complete original report](https://github.com/paperclipai/paperclip/blob/875f4c397d9e8c3f12f39dedd59abaf1eaf5236e/doc/plans/2026-10-02-stock-harness-live-comparison.md). - The skill-only repair holds the eight-word manual/shared prompts and merged #14920 fixed. All four matched profile configurations and 203 fixture/behavior files match. Candidate `abd0b628ca642c09a54a4edc56a5227402f6686e` varies only the two skill sources against baseline `bc83fe030234439ac51279502a28803958963e2e`. [Candidate workflow](https://github.com/paperclipai/paperclip/actions/runs/37060885547) and [baseline workflow](https://github.com/paperclipai/paperclip/actions/runs/37060888047) each pass 571 exact-source prerequisites before providers; all eight cells clean up successfully. Failed campaigns publish successfully and remain failed. - Repair pairs: Claude original Fail → Pass; Claude explicit Pass → Pass; both OpenCode cases Fail → Fail. Explicit OpenCode's handoff worsens beneath the unchanged failing UI-link grade: baseline gives a clickable API URL, candidate gives a code-formatted path without an anchor. The request's usable-link wording is narrower in the UI-only oracle. [Complete repair report and safe projection](https://github.com/paperclipai/paperclip/blob/875f4c397d9e8c3f12f39dedd59abaf1eaf5236e/doc/plans/2026-10-02-legacy-document-skill-repair.md). - The subsequent narrow stock metadata/link correction has two matched Pass → Pass cases, zero new machine failures/passes and no pending pairs. Both original-case handoff links remain deficient: candidate uses a wrong PAP prefix, baseline supplies a bare prefix-less slug path; the preserved original oracle only requires a durable document. Both explicit clickable UI-link cases pass revision/content/link grading. All four exact-source 587-check gates, single assignment runs and cleanup pass. This does not establish fix causality because baseline also succeeds. [Candidate workflow](https://github.com/paperclipai/paperclip/actions/runs/37069547401) freezes `fe9dc1e3c518825242ed889ab9c8352986f8c2ed`; [matched baseline](https://github.com/paperclipai/paperclip/actions/runs/37069552374) freezes `0d7ecfa96d72fba79b7f0a25052b42c0686c0488`. This is a skill-only comparison with reduced manuals/shared prompts held constant, not a repeat of the historical-manual comparison. Only original and clarified explicit classic OpenCode cases are selected, two per variant/four expected turns. 8,242 other tracked files and both profile hashes match; protected workflows admit each exact source before credentials. [Complete qualification report](https://github.com/paperclipai/paperclip/blob/74d0d3d945f4c52d0814b5a845ab5bd09f33cd6b/doc/plans/2026-10-02-opencode-skill-routing-link-qualification.md). Candidate original loads Paperclip/reference before saving publicly; baseline original loads it after writing locally, then saves publicly within the same assignment. Reported cost totals are $0.0107824490 candidate / $0.0107909015 baseline, with unmetered runtime. The later reference-only issue-derived link correction is provider-free calibrated and not live-qualified by these frozen runs; no further paid runs. - Retained tool calls show the repaired original OpenCode assignment loads only its assigned output skill before writing locally. Operational Paperclip is first loaded during automatic disposition recovery; its early recipe is visible then, but it never saves the missing document. Explicit candidate loads Paperclip and reads the new reference before saving successfully. All nine actual runs are counted. Reported LLM totals are $0.3802537209 baseline and $0.4918990161 candidate; local runtime is unmetered. - Initial setup, packaging, cancelled/missing-cell recovery, callback test and relative-output attempts remain retained. No completed provider failure was rerun. Frozen measurement branches are unchanged by later canonical metadata maintenance. - Run `pnpm test:e2e:runner:stock-harness`, `pnpm test:e2e:runner:unit`, and `pnpm test:e2e:runner:typecheck`. Select `stock-harness` explicitly for paid execution; it is excluded from `--all`. Prior-head integration: `36aa4d81c49a1a8f6f04b1a068fae19aa901955f` replays this PR on merged hiring #14985 (`862a5758ba0e88a33232c1f1fa645e85c38a3113`), preserving the four explicit custom-CEO-bundle checks, minimal generic manual boundary, and both suites. The combined fixture catalog and hiring calibrations pass 67 assertions; exact-head stock prerequisites pass 599 assertions (598 TypeScript + 1 Rust), all six gates and retained-receipt verification, zero providers/source errors, fingerprint `a7f5a22d860a88fe20cce213c6d5e0004788f32c8363930729aea4fd740ad16d`. E2E typecheck and 26-cell stock discovery pass. Fresh current-head CI passes all 52 checks with two intentional skips, and fresh Greptile is 5/5 with zero unresolved review threads. The prior source-plan browser failure is retained: a deterministic process fixture replayed its last `fixture:plan` command on `chat_task_completed`, writing revision 2 with identical body after the approval handoff. This was not paid provider execution. Rebased current-head CI passes the same assertion without an old-head retry or a change to that browser fixture. The merged hiring change was measured separately on immutable matched unions, with this reduced/shared/operational context and native completion guidance held constant. [Complete original two-profile report](https://github.com/paperclipai/paperclip/blob/f0512647656be78e48abd8c22a3078db8bf6bcd2/doc/plans/2026-10-02-hiring-template-live-comparison.md): [candidate](https://github.com/paperclipai/paperclip/actions/runs/37075466208) / [historical baseline](https://github.com/paperclipai/paperclip/actions/runs/37075469463), 705 provider-free prerequisites each. Both pairs are unchanged Fail → Fail on the exact-five count, with six core delivery checks passing all four cells; 28 actual successful runs include eight automatic completion wakes, zero retries, four successful cleanups. Source-read coverage is uncomparable, actual model charges unknown. Separately versioned provider-free accounting remains analytical work; original verdicts are preserved. This does not rerun or qualify the completed default-manual or native campaigns. ## Risks - Legacy ACP Claude's additional delivery loss is not closed by any later matched run and blocks the no-extra-failing-behavior merge criterion. Legacy document delivery may have relied on the prior manual/shared prompts. The early skill repair improves Claude in one trial; the later OpenCode pairs pass in both variants and cannot establish causality or robust recovery. Both original-case links remain deficient beneath the storage-only grade. The later issue-derived reference correction has only provider-free validation. Native finish/block descriptions must not be supplied to legacy agents. - The comparison holds merged native Codex fix #14920 constant; it cannot measure that fix's before/after task performance. - These bounded skill/context/chat workflows do not measure general coding quality. Unrepresented providers remain unqualified. - Saved manuals and old Codex sessions are not automatically migrated. Codex through ACP still has a separate base-instruction follow-up. ## Model Used OpenAI Codex, GPT-6 family as identified by this session. The exact deployment ID and context-window size are not exposed. The assistant used reasoning, repository tools, code execution, and delegated PR/eval work. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (relevant suites and all three unchanged narrow reruns pass; complete-run timing failures retained in Verification) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green on the new repair head (prior-head checks retained above) - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on the new repair head - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-03 12:32:42 -05:00
Devin FoleyandPaperclip	1815474597	fix: report pending execution phase at Stop timeout (#14990 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The server owns each adapter execution and waits for it to settle after Stop. > - A Stop timeout reports that termination remains unverified. > - Existing phase timings arrive only after their work completes, so a stalled await has no timing. > - This pull request samples the pending phase when the Stop timer expires. > - Operators can identify the pending operation without treating diagnostics as stop proof. ## Linked Issues or Issue Description What existing behavior does this improve? The opt-in Sentry context for an unconfirmed adapter Stop timeout. Current behavior The timeout includes execution identity but no pending phase. A session close, instruction collection, workspace restore, or diagnostic write can remain pending without producing its completion timing. Proposed behavior Add a closed-list phase and elapsed milliseconds from the exact live execution control. Sample them when the timeout fires. Report `unknown` and a null age when the control or attribution is unavailable. Reason and benefit The next timeout can identify which operation is still pending. It does not require task text, paths, provider output, or additional database writes. Breaking changes No API or execution behavior change. The existing opt-in error context gains two fields. Related public work: #14639 added Stop identity diagnostics; #14866 and #14945 cover instruction cleanup and teardown outcomes. This change adds pending attribution to those paths. The native Stop work in #14802 remains separate. ## What Changed - Add a bounded tracker per execution control. Token scopes support nested and overlapping awaits. A late release cannot clear a newer scope. - Track adapter execution, ACP cancellation and settlement, diagnostic writes, and host cleanup. Keep a coarse host scope until the executor finishes. - Sample only the matching current control and settlement promise at timeout. Freeze the sanitized result. Use a monotonic clock and cap elapsed time at one day. - Test stalled operations, repeated Stop calls, stale and wrong-run controls, callback failures, scope bounds, and the real Sentry SDK context. ## Verification - `pnpm -r typecheck` passed. - `pnpm build` passed. - Six focused suites passed: 79 tests. They cover pending scopes, Stop control ownership, real ACP settlement stalls, and Sentry context isolation. - The real Sentry SDK contract ran with the audited optional peer `@sentry/node@10.71.0` installed outside the workspace. Valid phase and elapsed values were exported; arbitrary labels and nonfinite elapsed values were rejected. - An independent agent reviewed the production diff and ran the focused tests without blockers. - `git diff --check` and a redacted Gitleaks scan passed. The local full `pnpm test:run` was stopped during its large serial server batch to avoid duplicating the sharded CI suite. No complete local broad-suite pass is claimed. - All CI gates passed on `c223237b58aa8d479d1c66d7d399de30270bac4f`: 54 successful checks and two expected Storybook skips. This includes the full sharded test suite, typecheck, build, real Sentry SDK isolation, browser tests, canary dry run, and the security scan after the PR became ready for review. - Greptile scored the same commit 5/5 with no actionable findings or unresolved review threads. ## Risks This is diagnostic instrumentation. Cancellation, deadlines, teardown order, termination proof, and file recovery proof remain unchanged. Unsupported or uninstrumented work uses a coarse phase. Tracker overflow fails closed to `unknown`. The tracker emits no new run-log or Telemetry event. The existing Sentry opt-in gate remains in place. ## Model Used OpenAI Codex, GPT-6. The agent used code inspection, local command execution, automated tests, and an independent agent review. The runtime did not expose a more specific model identifier or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 16:55:38 -07:00
Devin FoleyandPaperclip	4abff286c2	fix: retain resolved ACP execution timeout metadata (#14986 ) ## Thinking Path > - Paperclip manages agent work through adapters and heartbeat runs. > - ACP adapters resolve a timeout for the selected execution target. > - An untouched sandbox timeout uses a four-hour default. > - Heartbeat finalization rebuilt the metadata from the stored zero. > - This made a timed-out sandbox run report an effective timeout of zero. > - This change retains the adapter's resolved policy for accurate run diagnostics. ## Linked Issues or Issue Description What happened? ACP sandbox runs with `timeoutSec: 0` use the four-hour default. Their terminal metadata reports `effectiveTimeoutSec: 0` and `timeoutSource: config` because heartbeat finalization only reads the stored agent configuration. Expected behavior The result must report the policy the adapter used: `14400` and `sandbox_default`. Explicit limits, fractional limits, explicit unlimited overrides, and local defaults must keep their resolved values. Steps to reproduce Run an ACP adapter on a sandbox target with `timeoutSec: 0`. Compare the start log's four-hour policy with the terminal result's effective timeout. The new tests exercise the adapter result and the heartbeat metadata merge without waiting four hours. Paperclip version or commit Reproduced from `6eaf218924f0a89faf1c02eb0d6877a6c5c8a2cb`. Deployment mode Self-hosted server with an ACP sandbox execution target. Searched open timeout and metadata issues and PRs. Related #14804 exposes timeout configuration in forms; #14496 proposes a default policy; #14833 addresses CLI session retention. This PR changes only ACP result metadata. ## What Changed - Retain the resolved timeout in the ACP result after settlement. - Use validated adapter resolution when merging terminal timeout metadata. Preserve config fallbacks for older adapters and the HTTP millisecond policy. - Test sandbox defaults, explicit and fractional limits, explicit unlimited overrides, local defaults, malformed metadata, and unchanged cancellation fields. - Document the result fields and their meaning. ## Verification - `pnpm -r typecheck` passed. - `pnpm build` passed. - Stop metadata tests: 23 passed. - Reporter and diagnostic suites: 84 passed; two real-Sentry-SDK tests skipped because the optional SDK is not installed. - ACP engine suite: all 206 tests passed with a deterministic local `gemini --version` shim. Ambient host CLI probes made the existing Gemini session-resume fixture intermittent (one assertion failure in each of two broad runs); an isolated 15-case rerun and the clean-base 206-test suite also passed. No assertion or timeout was changed. - `pnpm test:run` is in progress. This PR does not claim a complete local suite pass. - Independent review found no blocking issues. The tests cover real adapter emission and the real metadata merge separately. ## Risks Low runtime risk: this changes result diagnostics. It does not change timeout values, cancellation acknowledgement, cleanup, checkpoint safety, retries, or provider operations. It does not fix the cause of a quiet or long-running tool. Older stored results are not rewritten. The new source values apply only when an adapter returns a valid resolution. ## Model Used OpenAI GPT-6 with reasoning, repository inspection, code editing, and test execution. The deployment-specific model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 16:09:36 -07:00
Devin FoleyandPaperclip	22cea6b2e6	fix: bound sandbox bridge waits and flag silent runs sooner (#14979 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Sandbox agents exchange input and output through bridge control commands. > - A provider can stop responding to a command even when it receives a timeout. > - These small commands can inherit a four-hour agent lifetime and block input or teardown. > - The board also calls a silent run healthy for the first hour. > - This pull request bounds bridge control waits and surfaces silence sooner. ## Linked Issues or Issue Description What happened? A sandbox run can remain active when a bridge control command never returns. The shared helper passes a timeout to the provider but does not enforce it on the host. It also accepts the agent's hours-long timeout. Output silence remains `ok` for an hour and becomes `critical` only after four hours. Expected behavior Bound short bridge operations even if the provider never settles. Report failed input delivery through the existing shutdown path. Warn after five silent minutes and escalate after fifteen. Keep normal agent command limits and require verified termination before releasing execution ownership. Steps to reproduce 1. Use a sandbox runner whose bridge read or input-upload promise never settles. 2. Set its configured timeout to four hours. 3. Observe that the old queue client never returns or rejects. 4. Inspect a running task with 35 minutes of output silence. The old summary still reports `ok`. Paperclip version or commit Base commit `d6d88b9de2`. Deployment mode Self-hosted server with sandbox execution. Agent adapter(s) involved Shared command-managed sandbox bridge, including Codex ACP sessions. The informational silence thresholds apply to active runs across adapters. Related: #14889 recovers stalled Daytona output streams; #14485 retries explicit gateway failures during input delivery. This change bounds short control operations whose provider promises never settle. It does not add tool replay or automatic cancellation for output silence. #6297 proposes configurable per-agent silence thresholds; this patch only changes the existing defaults. ## What Changed - Enforce at most 30 seconds per bridge control shell command on the host and provider, including callback startup and shutdown, process-session launch, and payload setup. Preserve shorter configured deadlines and launch environments. - Keep the long-lived agent command outside this deadline. Use a fixed timeout diagnostic without command payloads. - Surface suspicious output silence after five minutes and critical silence after fifteen minutes. - Decouple the shared-workspace holder cutoff from warning thresholds and preserve its existing one-hour value. - Add regressions for hung reads, a late upload response, failed input delivery, exact warning boundaries, and fresh output clearing warnings. - Update the adapter guide and execution contract. ## Verification - The three new queue-client regressions fail on the unchanged base and pass with this patch. - Final callback bridge and sandbox session suites: 214 passed. These cover hung reads, writes, startup, shutdown, process-session launch, payload setup, and the separate long-running agent limit. - Stdin ordering and shutdown suite: 56 passed after the lifecycle change. - Daytona and watchdog coverage passed in the earlier focused runs. Across the focused suites, 602 distinct tests pass. - `pnpm -r typecheck` and `pnpm build`: passed. Server and adapter typecheck/build also passed after their respective follow-up changes. - `pnpm test:run`: attempted and stopped after known local failures. Four chat/email cases used an external ancestor skill path, three skill-cache cases failed on macOS, and one wakeup case timed out. The wakeup case passes alone (1 passed, 27 skipped). This run spanned the workspace-cutoff follow-up and also failed its new holder case; a fresh final-head workspace suite passes all 19 tests. The interrupted run is not a full local-suite pass or final-head verification. - A filesystem queue-drain test failed once during the lifecycle rerun and passed on the complete two-suite rerun. It uses the filesystem client, outside the changed command-runner path. - Complete CI on `ff2212c235`: 53 successful checks and two expected skips, including the full test suite and canary packaging dry run. No failed or pending checks. - Greptile reviewed `ff2212c235` at 5/5. All review findings are addressed, no threads remain unresolved, and the branch has no merge conflicts with `master`. - `git diff --check` and a scan of added text for secrets and private identifiers passed. ## Risks - A bridge control operation that needs more than 30 seconds now fails, even if the caller selected a longer run lifetime. Agent commands retain their own limits. - Timing out a provider promise does not cancel the remote operation or prove it stopped. Existing execution settlement still owns termination verification. No uncertain tool action is replayed. - Quiet healthy runs display warnings sooner. Existing snooze, continue, and false-positive dismissal controls still apply. Silence alone does not cancel a run, create review work, or change assignments. - No schema or API shape change. ## Model Used OpenAI GPT-6 through Codex, with tool use and code execution. The exact serving model ID and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run change-specific tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 15:29:41 -07:00
DottaandPaperclip	2ec82c5774	fix(runner): preserve task context when tool connections change (#14963 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents use tools through company-scoped connections and provider sessions. > - Resolving a tool connection currently forces a fresh session even when the provider can load new tools into the existing conversation. > - A fresh provider conversation can receive too little history to continue the task. > - This pull request adds explicit tool-refresh capabilities and uses them in both runner paths. > - Fresh attempts receive bounded task history with source IDs and retrieval instructions. > - The benefit is that agents can continue the same task after a connection changes. ## Linked Issues or Issue Description What happened? A resolved tool connection forced a fresh provider conversation. The new conversation could lose the original goal and prior answers. Claude also rejected resume when only the MCP server set changed. Expected behavior Resume the provider conversation when its harness can refresh tools. When a fresh session is required, supply enough bounded history to continue the task. Preserve company, agent, task, workspace, model, instruction, and skill checks. Steps to reproduce 1. Start a conversation and agree on a task and its constraints. 2. Request and connect a tool needed for the task. 3. Continue the conversation after the connection resolves. 4. Check that the agent remembers the task and can use the new tool. Paperclip version or commit The bug was reproduced on master at `c46e41e81`. This branch is rebased on current master. Deployment mode Self-hosted server. Both legacy adapters and the native runner are affected. Related public work: Refs #13282 for task-backed conversations. Refs #13057 for the broader session-compaction proposal. Refs #14659 for another report about local CLI session continuity. This change fixes tool-connection continuation. Provider authentication repairs keep their existing recovery behavior. ## What Changed - Expose tool-refresh support in native harness descriptors and legacy adapter metadata. - Request tool refresh after connection resolution. Keep provider authentication repair as a fresh-session wake. - Reload current tools and credentials while retaining supported Claude, Codex, Grok, and other provider conversations. - Allow MCP-only changes during qualified native recovery. Keep all other compatibility checks. - Refresh managed-provider and ACPX tool bindings when attaching a new run. - Add a fresh-session handoff for both runner paths. Bound database reads, excerpts, and the final packet to 24,000 bytes. - Include the original request, recent messages, decisions, plans, prior answers, and source IDs. Mark omitted content. Apply reset boundaries, wake cutoffs, quarantine, and secret redaction. - Add regression tests and document the capabilities and handoff behavior. ## Verification - `pnpm -r typecheck` and `pnpm build` passed. Rust formatting passed. - Final review fixes passed 314 server tests, 333 adapter utility tests, 139 native-session runtime tests, and 12 managed-provider Rust tests. They verify historical quarantine, raised budgets across attachment, no history reads on successful resume, and handoff delivery on fresh retry. - Broader branch verification also passed 1,401 adapter utility tests, 1,047 runner TypeScript tests, 43 Grok adapter tests, and 311 Rust core tests. - Live Claude CLI and Grok ACP probes preserved the provider session ID, recalled a prior task constraint, and called a newly added read-only MCP tool. - GitHub CI passed on `b21486d18084a7aa4cafbe8e012f7cad6585d9cc`: 55 successful checks and 4 skipped checks. This includes all test shards, all eight browser shards, runner checks, and the Grok clean public npm install canary. [CI run](https://github.com/paperclipai/paperclip/actions/runs/37057514976). - A full local test attempt encountered a separate Git snapshot timeout. All affected local suites passed after the final edits, and the full CI test gates passed. - Review the capability matrix in `packages/paperclip-runner/README.md`. Repeat the four reproduction steps with a supported provider and with an unsupported harness. ## Risks - Provider tool refresh can fail. Existing recovery falls back to a fresh conversation where policy permits it. - A new transport can replace an old process while preserving the provider conversation. Tests cover current credentials and unchanged identity. - Long history can omit older context. Explicit markers and source IDs let the agent retrieve needed context within task scope. - Unknown and unqualified harnesses use the fresh-session path. No database migration is required. ## Model Used OpenAI Codex, GPT-6, with reasoning, tool use, code execution, and live provider testing. The exact model ID and context-window size are not exposed in this session. Claude and Grok also ran as test subjects. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 15:11:44 -05:00
DottaandPaperclip	9786f6df56	fix(runner): preserve credential content in document saves (#14937 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Runner sends authorized tool calls to the control plane. > - Agents use these calls to save plans and instruction files. > - The Runner used diagnostic secret detection to reject execution arguments. > - Ordinary credential-related prose could reject a document save before persistence. > - This pull request forwards the original arguments and leaves credential policy to the provider harness. > - The benefit is reliable saves with useful diagnostic records. ## Linked Issues or Issue Description Related foundation: Refs #12415 and #14430. No duplicate save-policy fix was found. What happened? A `write_document` call failed before the server saved its plan. The Runner reported `semantic tool input contains credential material; refusing to execute altered arguments`. The detector also masked ordinary phrases such as `secret manager` and `credential handling` in diagnostics. Both TypeScript dispatchers had equivalent execution gates. One dispatcher also rewrote structured approval and question payloads before execution. Expected behavior Paperclip forwards authorized arguments unchanged. The provider harness decides credential-content policy. Log and audit redaction does not reject or rewrite save input. Steps to reproduce 1. Send an authorized `write_document` call with a plan that discusses credential handling. 2. Include an intentional credential value in the body to exercise harness-owned policy. 3. The old Runner rejects the call. With this change, the document service stores the exact body. 4. Diagnostic records still mask explicit credential values. Qualified credential fields, short bearer values, opaque diagnostic pairs, and valid encoded JSON token headers have regression coverage. Paperclip version or commit Reproduced at `c46e41e81c03cd3c8b64cf993615b604d7fe8c62`. The branch is based on current `master`. Deployment mode Server deployment with the native Paperclip Runner. Local regression tests use the real document service and an embedded test database. ## What Changed - Remove credential-content vetoes from Rust admission and both TypeScript semantic dispatchers. - Preserve original structured approval and question arguments during execution. - Keep transport bounds, schema checks, authorization, idempotency, and audit masking. - Require explicit credential syntax or recognized formats for diagnostic masking. Preserve ordinary prose, metadata, and dotted identifiers. - Test exact document persistence, replay, nested argument identities, and masked audit copies. - Remove obsolete retry guidance and document harness-owned credential policy. ## Verification - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --lib --test acpx_event_payload --test acpx_provider_state --test acpx_provider_turns`: 355 tests passed. - Focused server and adapter tests: 189 tests passed after rebase. These include the real document save and the complete tool-gateway suite. - Semantic dispatcher and conformance tests: 34 tests passed. - Diagnostic redaction and MCP tests: 46 tests passed, including all six review examples. - `pnpm -r typecheck` and `pnpm build` passed on the repaired branch. - The broad local root suite was interrupted after database fixture setup failures. The focused database suites passed. CI runs the complete configured test lanes. ## Risks - Authorized tool arguments can intentionally contain credentials. The harness must enforce its content policy. - Diagnostic detection is narrower. Explicit assignments, credential fields, and recognized credential formats remain masked. - The change does not add a database migration or change company authorization. ## Model Used - OpenAI GPT-6 through Codex. The session exposes the GPT-6 model family; its exact runtime model identifier and context window size are not exposed. Used reasoning, tool use, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 14:19:41 -05:00
DottaandPaperclip	7a52dcdc74	fix: repair MCP validation and cancelled execution recovery (#14951 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The tool gateway gives agents access to connected services. Recovery controls what happens when a run stops. > - Generated tool names can exceed the provider limit after the MCP client adds its prefix. > - The same invalid definition can fail each automatic retry. A cancelled run can also hold saved messages without showing its cause. > - This pull request bounds tool names, stops configuration retries, and retains cancellation evidence. > - It shows the stopped run and admits saved input only after the existing safety checks pass. > - The benefit is a clear recovery path that preserves operator Stop and prevents duplicate message delivery. ## Linked Issues or Issue Description What happened? A long connected MCP tool name makes the provider reject the entire request. Automatic recovery repeats the invalid request. Separately, unexpected legacy cancellations can leave saved input behind a recovery hold. The notice does not identify the stopped run or its cause. Expected behavior Complete MCP names fit the provider limit. Tool-definition errors require configuration repair. Cancelled runs retain their source and reason. The recovery notice shows the cause and saved-message count. Verified unexpected cancellations can start a fresh turn through the existing admission checks. Steps to reproduce 1. Assign an App gallery connection with a long application key and tool name to a Claude agent. 2. Start a run. The provider rejects a name over 128 characters, including its MCP prefix. 3. For cancellation recovery, stop a legacy provider turn without an operator Stop request and send a user message while the recovery hold is active. 4. Inspect the recovery notice and the deferred message queue. Paperclip version or commit Rebased onto master at `cf8ad63c806685bfd7c48e3ed4a919d61a7c55f1`. Deployment mode Hosted or self-hosted server with legacy Claude or Codex execution. Related public work: - Refs #14017. That PR caps name segments. This PR preserves existing short names and uses stable hash aliases for long complete names. It also covers classification and recovery. - Refs #4510. That PR adds a cancellation-source column. This PR records bounded evidence in the existing run result, without a migration. - Refs #12552 and #4506. Those PRs suppress recovery after operator cancellation. This PR preserves operator intent and uses the existing continuation gates. ## What Changed - Bound gateway names with the full provider prefix in the 128-character budget. Retain the original upstream tool name for dispatch and permissions. - Classify invalid tool definitions as configuration failures before diagnostic redaction. Stop automatic retries and continuation attempts for that error code. - Persist cancellation source, expectedness, initiator, reason, and time. Preserve recorded Stop intent when adapter results arrive. Report unexpected started cancellations with closed diagnostic labels. - Show the run cause, saved-message count, and Inspect run link. Offer Continue for eligible unexpected cancellations. Require verified provider stop, empty tool inventory, ownership, and the existing pause, budget, approval, and dependency gates. Use the existing queue for single delivery. - Add regression coverage and update the execution, MCP gateway, and run-log documentation. ## Verification - `pnpm -r typecheck` and `pnpm build` passed. - `pnpm check:token-gates` passed. - Ran `pnpm test:run` and completed its workspace and serialized groups. Initial resource and timing failures passed on isolated reruns. All 149 serialized route suites passed. - Reran the changed server, adapter, and UI suites after the rebase. Coverage includes long-name upstream dispatch, configuration retry suppression, cancellation evidence retention, privacy labels, oversized run projection, and concurrent saved-message delivery. - `pnpm test:e2e tests/e2e/legacy-failure-continuation.spec.ts` passed all six browser scenarios. The recovery notice shows the run cause and inspection link, and each recovery entry point reaches one new response. - Added database-backed checks for active, removed, paused, unavailable, and disabled chat connections. The final continuation and recovery-notice suites passed 167 tests. Externally bound chats hide board Continue and show a usable next action. - All 55 GitHub checks passed on `42afbf1371dcaeb72646e3d8f65c19ff7cddf8de`. Two unrelated Storybook jobs were skipped by their normal conditions. Greptile reviewed that commit at 5/5 with no findings and no open review threads. ## Risks - Long tool names change to aliases. Existing short names stay compatible. The original connection and upstream name remain the dispatch authority. - Invalid tool definitions no longer get automatic retries. An operator must repair the configuration before a new attempt. - Continuation changes apply only to positively identified unexpected legacy cancellations with complete empty tool inventory. Operator Stop, unknown historical cancellations, outstanding tools, and unverified provider termination keep their holds. - No database migration. The added projection fields are optional. Cancellation reason and initiator IDs remain local run evidence; Sentry receives only closed source and initiator-type labels and expectedness. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, repository editing, shell execution, and GitHub tool use. The runtime does not expose the exact model variant or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 13:47:59 -05:00
Nicky LeachandPaperclip	9d0f7e2ddd	fix(adapter-utils): make the directory merge lock crash test deterministic (#14881 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - A workspace restore merges a directory, and a cross-process lock serializes that merge > - The lock must recover after the process that holds it crashes > - One test proves that recovery: it kills the holder process and then acquires the lock > - That test failed intermittently for two independent reasons, and this pull request removes both > - First, it spawned the holder through the tsx command-line entry point, which re-spawns the evaluated code in a further child process, so the kill signal reached only the wrapper and the real holder kept the lock > - Second, it replaced the global clock to force a timeout, which left the acquisition with zero real retries, so a single transient busy result failed the test > - The benefit is a deterministic crash-recovery test and a reliable continuous-integration signal ## Linked Issues or Issue Description What happened? The test `recovers a killed holder even when its recorded PID has been reused` in `packages/adapter-utils/src/directory-merge-lock.test.ts` failed intermittently in continuous integration. The failure reported `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` with `waitMs: 3` and `knownLocalHolder: false`. A rerun of the same job on the same commit passed. Expected behavior The test must pass every run. It must acquire the lock after the holder process dies. Steps to reproduce 1. Check out `master`. 2. Run `npx vitest run packages/adapter-utils/src/directory-merge-lock.test.ts`. 3. Repeat the run. The named test fails intermittently. Paperclip version or commit `32e9f3ba0ec000578936731990d23bb0e77493fa` Deployment mode Built from source. The failure appears in the general test job of continuous integration. Agent adapter(s) involved Not adapter-specific (core bug). Relevant logs or output ``` ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT workspaceRestoreLock: { ownerState: 'alive', knownLocalHolder: false, waitMs: 3, ownerSameProcess: true, ownerAgeMs: 60030, ownerPredatesProcess: true } ``` ## What Changed The test file had two independent defects. This pull request removes both. 1. The kill signal did not reach the real lock holder. The test spawned its holder through the tsx command-line entry point. That entry point re-spawns the evaluated code in a further child process. `SIGKILL` therefore killed only the wrapper, and the process that had opened the lock database survived as an orphan that still held the lock. The test now loads tsx as an `--import` hook, so the spawned process is the real holder and the kill releases the lock at once. This also stops the test from leaking an orphan process. 2. The forced clock left the acquisition with zero retries. A test helper replaced `Date.now` to force a timeout. The implementation reads `Date.now()` one time, to compute its deadline, so that single read consumed the forced value and every later read returned a time already past the deadline. The retry loop therefore got one attempt and no retries. That is correct for a test that asserts a timeout, but the crash-recovery test asserts a successful acquisition, so any transient busy result on the first attempt failed it. The fix removes the clock replacement from the whole file and gives each test a real, short, explicit wait budget: - `withDirectoryMergeLock` takes a new optional wait-budget parameter. It threads through to the lock acquisition function. The production default is the existing 30-second budget, and no production call site changed. - The five tests that assert a timeout pass a real 200-millisecond budget. Each one still times out for the real reason, because the lock is genuinely held or the legacy lock directory genuinely exists. Each one now exercises at least four real retries of the 50-millisecond retry interval. - The crash-recovery test passes a real 5-second budget. A failure now reports the structured `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` diagnostic well inside the test timeout, instead of a bare test timeout. No test timeout increased. Every `it(..., N)` timeout in the file equals its value on `master`. ## Verification - Measured the first cause rather than assumed it: the spawned wrapper process reported one process id, and the process that opened the lock database reported a different process id and named the wrapper as its parent. The real holder kept the lock for about 50 to 60 milliseconds after the kill. - Reproduced the failure deterministically before the change, with no artificial processor load: 15 of 15 runs failed. Confirmed the fix: 15 of 15 runs passed. - Ran the lock test file 15 times in series: 12 of 12 tests passed every time. - Confirmed the clock replacement is gone: a search for a `Date.now` override in the file returns nothing. - Confirmed the production default is unchanged at 30 seconds, and that the diff touches no production call site. - Proved the diagnostic still surfaces: with a temporary edit that held the lock with a genuine live holder, the test failed with `ERR_WORKSPACE_RESTORE_LOCK_TIMEOUT` and the full `workspaceRestoreLock` block at about 5 seconds, inside the 15-second test timeout. The temporary edit was reverted. - `workspace-restore-merge.test.ts` passed 56 of 56. The adapter test files that cover every production caller passed 116 of 116 and 52 of 52. `agent-directory-working-copies.test.ts` passed 70 of 70. - The `adapter-utils` and `server` type-checks passed with no error. - Confirmed that no spawned process survives the test run. ## Risks Low risk. The production change is one optional parameter with the existing default, so every production caller keeps the real 30-second budget and no production call site changed. The remaining change is limited to one test file. The `--import` form of the tsx hook is already used elsewhere in this repository, in the container image command and in an end-to-end test configuration. Test coverage does not drop: the owner record is diagnostic only, the SQLite reserved lock remains the authority that the tests exercise, and the timeout-asserting tests now exercise the real retry loop instead of a replaced clock. The file costs about 0.5 to 0.9 seconds more wall clock than `master`, which is the cost of the short real waits that replace the instant forced timeout. ## Model Used Claude Sonnet 5 (`claude-sonnet-5`), used with extended thinking and tool use for the diagnosis, the measurement, and the change. ## Checklist Check every box that the state of the pull request satisfies. The local test runs and the type checks are complete. Reconcile the continuous-integration and review boxes after the checks reach their terminal state. ## Test plan - [x] Continuous integration is green on every check, including the general test job. - [x] The general test job passes the file `packages/adapter-utils/src/directory-merge-lock.test.ts`. - [x] Greptile returns 5 of 5 with no open item. - [x] `mergeable: MERGEABLE` is terminal. --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-02 08:17:03 -07:00
Devin FoleyandPaperclip	f2e0f19630	Defer agent directory cleanup until stop proof is available (#14866 ) ## Thinking Path > - Paperclip manages agents and their persistent files. > - Each run owns a temporary agent directory and a save receipt. > - Cleanup needs independent proof that the owning process stopped. > - A cleanup call without that proof currently waits for the directory lock anyway. > - A second lock failure can prevent environment release after the run already reported a failed save. > - This change skips cleanup that has no authority and retries unavailable remote copies after exact destruction proof. > - The save failure stays visible. Existing lock owners remain protected. ## Linked Issues or Issue Description Related work: Refs #14787 (lock diagnostics), #14695 (warm instruction ownership), #9667 (stale lock proposal), and #9872 (control-plane ownership proposal). I checked open PRs and issues. This change leaves the shared filesystem lock protocol in place and does not duplicate the warm-retention work in #14695. What happened? Heartbeat cleanup records an explicit unavailable instruction-save warning, then calls directory release before releasing the environment lease. Release can wait for a lock even though the copy has no process-stop proof and cannot be removed. That secondary timeout prevents the following lease-release step. If destruction proof arrives later, the unavailable copy is excluded from both recovery queries. Expected behavior Skip a release that cannot remove anything. Preserve the failed-save receipt and candidate fields. Once exact remote destruction is recorded, recover remote cleanup without running a provider command. Unavailable local copies retain their potentially uncollected edits even if local stop proof arrives later. A blocked cleanup must not prevent cleanup for other agents. Steps to reproduce 1. Prepare an agent directory, report its save unavailable, and leave process-stop proof absent. 2. Hold the shared directory lock and call release. Before this change, release waits and fails although removal is not authorized. 3. Record destruction of the copy's exact remote lease. Before this change, neither recovery sweep selects the unavailable copy. Paperclip version or commit Reproduced against `efc2e6810e9bc0dc8cb412b0e7647c0db9821caa`. Deployment mode Local and remote execution with persistent agent directories. Tests use an isolated embedded PostgreSQL database and fixture transports. ## What Changed - Re-read receipts and skip release before lock acquisition when stop proof is absent, the copy is superseded, or cleanup is complete. Keep the same checks inside the lock. - Recover unavailable remote copies only after exact destruction proof. Preserve their unavailable state, errors, candidate hash, and candidate bytes. Keep unavailable local copies and their uncollected edits unchanged. - Store destruction-only cleanup authority with the stop proof. Later cleanup honors it after a lost database response or restart, including when a transport remains cached. - Defer failed or unproven cleanup with bounded batches and a retry delay. Keep failed cleanup visible in logs and its receipt. - Serialize preparation of an existing run with cleanup. Fresh run preparation keeps its existing admission path. - Cover held locks, receipt scope, delayed proof, batch fairness, lost update responses, cached transports, and concurrent same-run preparation with database regressions. ## Verification - Focused directory, legacy instruction-copy, shared lock, and bounded diagnostic suites: 169 tests passed across four files. - `pnpm -r typecheck`: passed on the final source. - `pnpm build`: passed on the final source. - Completed all selected local `pnpm test:run` groups: 733 general server suites, 149 serialized suites, and 14 workspace projects. There are 13 known macOS `EACCES` failures in the unchanged runtime skill cache tests. Their exact signatures match earlier clean-base results, and the cache source and test blobs match both that base and this PR base (existing fix: #14290). One CLI import test timed out under concurrent load; its full file passed separately (17 tests). Broad coverage began before the review corrections; the final source has the focused 169-test run, typecheck, and build. This is a local verification limit, not a passing full local suite. - `git diff --check` and local Gitleaks plus private-identifier/PII diff scans passed. - Independent review of the final source found no remaining actionable issue. Its 17 targeted tests cover crash recovery, cached transports, same-run preparation, real local edit preservation, proof scope, and batch fairness. The main focused run also covers contained scheduling failures. - Final commit `35a24085f7`: Greptile 5/5 with no recommendations and zero unresolved review threads. - Final commit `35a24085f7`: all 53 checks passed, including Canary Dry Run and the security scan; two visual checks were intentionally skipped. The workspace shard passed on retry after GitHub reported that its first runner lost communication. An earlier Canary runner shut down after the release dry run passed. Neither interruption recorded an application assertion failure; the exact final-head checks are now green. ## Risks - This repairs cleanup ordering and recovery eligibility. It does not repair an ambiguous legacy lock owner or restore unsaved files. Actual collection still fails visibly when its lock cannot be acquired. - An unavailable remote copy is recovered only after exact destruction proof. A stopped but retained environment stays protected; recovery does not execute a command that could restart it. - Unavailable local copies with later stop proof still retain potentially uncollected edits. A general local recollection or reclamation policy remains outside this change. - Existing-run preparation now waits for the same lock as cleanup. The fresh-run path is unchanged. - The cleanup mode is stored in the existing private receipt JSON. No schema migration or public API change is required. - No deployment, task replay, or runtime lock deletion was performed. ## Model Used OpenAI GPT-6 (Codex), with reasoning, repository tools, and test execution. The runtime does not expose a more specific model suffix or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 14:28:47 -07:00
Michael NguyenandClaude Opus 5.5	b721d24cac	fix(adapter-utils): retry GitHub broker transport failures before falling back (#14856 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents run `git` and `gh` through a managed launcher. The launcher gets a GitHub credential from the Paperclip control plane > - The launcher sends one request to the credential broker for each command > - If that request fails at the transport level, for example after a 10-second timeout, the launcher continues without managed credentials > - So a slow or restarting control plane removes the managed GitHub identity from that command. Some agents then use other GitHub identities that do not have the necessary permissions > - This pull request retries a failed broker request two more times, with a short backoff, before the launcher gives up > - The benefit is that a short control-plane delay does not remove the managed identity from an agent's GitHub operation ## Linked Issues or Issue Description Refs #14175. That pull request changes the same broker request loop for a different failure: sandbox network denials. The pull request that merges second must rebase. What happened A Codex agent ran `git` and `gh` through the managed launcher while the control plane was under heavy memory pressure. Each command printed `Paperclip: GitHub broker_transport_unavailable; continuing without managed credentials.` The agent then tried to open the pull request through a different GitHub integration. GitHub rejected the request with `403 Resource not accessible by integration`. Expected behavior A short broker delay or a short transport failure must not remove the managed GitHub identity from the command. The launcher must try the broker again before it continues without credentials. Steps to reproduce 1. Set `PAPERCLIP_GITHUB_BROKER_URL` to a closed port. 2. Start a broker on that port after about 300 ms. 3. Run `gh` through the launcher. 4. Before this change, the launcher prints `broker_transport_unavailable` and runs `gh` without the managed token. Version or commit `4ac374103` on master. Commit `3166e93a7` has the same code. Deployment mode Local trusted instance that runs as a launchd service, with `codex_local` agents. ## What Changed - `packages/adapter-utils/src/github-launcher.ts`: the broker request loop now catches transport errors and retries up to two more times, after 0.5 s and then after 1 s. The loop reads the response body inside the retry, so a failed or slow body read is also retried. Busy (409) responses keep their own budget of 30 attempts, separate from transport retries. After the third transport failure, the launcher prints `broker_transport_unavailable` as before. - `packages/adapter-utils/src/github-launcher.test.ts`: two new tests make the broker fail the first request and answer the second. In one, the connection drops before the response. In the other, the connection drops in the middle of the body. Each test checks that `gh` gets the managed token, that the broker receives exactly two requests, and that no `broker_transport_unavailable` message appears. - The existing `broker-offline` test now has a 15-second timeout, because each command now retries twice before it falls back. ## Verification - `npx vitest run packages/adapter-utils/src/github-launcher.test.ts`: 9 of 9 tests pass. - The body-read test fails on the first commit of this pull request and passes with the second commit. - `pnpm --filter @paperclipai/adapter-utils typecheck`: passes. - The existing `broker-offline` test confirms that the launcher still falls back after the retries, and that local Git still works. ## Risks - When the broker is unreachable, each `git` or `gh` command now waits about 1.5 s more before it continues without credentials. When the broker times out, the worst case is about 31.5 s instead of 10 s. - The change only adds retries. It does not change which credentials the launcher accepts or which environment variables it copies. - #14175 changes the same loop. The pull request that merges second needs a small rebase. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - Anthropic Claude Opus 5.5 (`claude-opus-5-5`), used through Claude Code with tool use: shell commands, file edits and test runs. The model wrote the change, the test and this description. The repository owner approved the change before it was made. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — targeted tests and the package typecheck; see Verification - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes — no documentation describes the broker retry - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green — CI has not run yet - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — Greptile has not reviewed yet - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>	2026-10-01 12:57:41 -07:00
Devin FoleyandPaperclip	dd9983b894	fix(adapter-utils): release restore locks when a process crashes (#14869 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs restore workspace files and collect instruction-file changes. > - Writers to the same target directory must wait for each other. > - The current lock records a PID, which a new process can reuse after a crash. > - A reused PID can keep an orphaned lock alive and make each later run fail. > - This pull request makes a SQLite file lock decide ownership. The OS releases it when the process exits. > - Later runs can proceed after a crash, and concurrent live writers remain protected. ## Linked Issues or Issue Description Refs #10914. This addresses crash recovery. It does not cancel a stalled operation in a process that is still alive. Related work: #9667, #14787, and #12187. The earlier attempt in #9667 assumes one live server per lock root. This implementation uses an OS-backed lock to support concurrent writers without treating a different process token or an old timestamp as proof of a dead owner. It retains the private lock root and bounded timeout diagnostics from the merged changes. After a process dies while holding a restore lock, a replacement process can reuse its PID. The existing `process.kill(pid, 0)` check then reports a live owner forever. Later runs can complete their model turn but fail during file collection or restore. ## What Changed - Hold a SQLite `BEGIN IMMEDIATE` transaction for each directory write. Use the existing built-in `node:sqlite` dependency. - Keep each lock database on a stable inode. Keep PID and time metadata only for diagnostics. - Retain the 30-second asynchronous wait and existing timeout error code and diagnostic fields. - Fail closed when an old directory lock exists. Document a stopped-writer upgrade and rollback procedure. - Add real child-process tests for crashes, PID reuse, live owners, and connection cleanup. Cover callback failures, independent targets, stable inodes, invalid lock files, and ambiguous legacy records. ## Verification - Before the fix, the crash/PID-reuse test and the live-owner test both failed. Both pass with this change. - `pnpm exec vitest run packages/adapter-utils/src/directory-merge-lock.test.ts packages/adapter-utils/src/workspace-restore-merge.test.ts`: 56 tests passed. - Restore and agent-file working-copy integration tests: 118 tests passed before the additional connection-cleanup test. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - Full GitHub CI: all checks passed, including Linux workspace tests, server test shards, build, typecheck, and browser tests. - Greptile: 5/5, with no review threads or unresolved comments. - `pnpm test:run`: started locally, then stopped with SIGINT (exit 130) after full CI passed. The local serial run did not complete and is not counted as a full local pass. The completed CI shards provide the full-suite result. ## Risks - Upgrade and rollback require a drain. Stop every old writer that shares an instance root before switching protocols. Old and new versions must not write concurrently. - Existing legacy `.lock/` directories remain blocking. After all writers stop, preserve run evidence and move those directories to an operator scratch directory. The new code does not infer that they are abandoned from PID or age. - Never delete or replace a `.lock.sqlite` file while writers can run. These small files remain after release. - The shared filesystem must support reliable SQLite locking. Broken network-filesystem locking is unsupported. - This change prevents new orphaned ownership. It does not recover file changes lost during earlier failed collections, or interrupt a live operation that stalls. - No application database migration or new native dependency is required. See `doc/workspace-restore-locks.md` for the procedure. ## Model Used OpenAI Codex based on GPT-6, with code execution and repository tools. The exact model variant and context window are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused regression and integration suites; see the full-suite note above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-10-01 12:14:48 -07:00
Devin FoleyandPaperclip	4b9a6000f7	Add bounded evidence for directory lock timeouts (#14787 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent files use directory locks during collection and cleanup. > - A lock timeout can fail finalization after the model turn completes. > - The timeout currently identifies no owner state or waiting operation. > - This pull request adds bounded evidence to the existing run failure report. > - Operators can distinguish a known local holder from a possible old lock without changing lock safety. ## Linked Issues or Issue Description What happened? A directory lock timeout does not distinguish active local work from an owner record left by an earlier process. The stored execution stage can also precede the cleanup operation that failed. Expected behavior The failure report should identify the waiting operation and expose bounded ownership clues. It must preserve the timeout and keep unknown ownership protected. Steps to reproduce Hold a directory merge lock while a second caller reaches its acquisition deadline. The regression tests exercise a live holder and an older owner record with a live PID. Related: #9667 proposes stale-lock recovery under a single-server assumption. This change only adds evidence and does not adopt that assumption. #14575 and #14665 add other run failure diagnostics. ## What Changed - Record lock owner state, capped age and wait duration, same-process and process-age comparisons, and whether this module holds the lock. - Label agent-directory release, collection, checkpoint, and warm handoff timeouts with a fixed operation code. - Validate each field before the existing event-local Sentry report accepts it. Exclude owner records, PIDs, paths, and absolute timestamps. - Limit the extra diagnostic owner read to 100 ms with best-effort abort; malformed JSON is `invalid` and unreadable owner records remain `unknown`. - Document the diagnostic limits and verify that contenders never reclaim protected locks. ## Verification - Focused lock, diagnostic, real Sentry SDK, and database-backed agent-directory tests: 126 passed, including stalled-read and malformed/missing/unreadable-owner regression coverage. - Final revision `0691613dcc`: all 54 reported checks successful, with two intentionally skipped Storybook checks. Greptile: 5/5, zero unresolved review threads; no merge conflicts. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - `pnpm test:run`: complete suite coverage ran with the existing repository shard flags: four general-server shards, four serialized shards, two general-workspaces-a shards, and general-workspaces-b. The full run is not green because of the base failures below. - The broad run found 13 failures in the unchanged macOS skill-cache tests. All 13 reproduce on the clean base revision. Open PR #14290 covers that existing failure. - Two unchanged CLI archive tests hit their five-second limits during the broad run; all 17 tests in that file pass on recheck. A CLI auth socket error also cleared on recheck (19 tests), and its full serialized shard passed on rerun. ## Risks This is a diagnostic change, not a stale-lock fix. Owner observations can race with release. Wall-clock shifts can affect the age comparison. A local-holder flag covers only this module instance. None of these fields authorizes reclamation or proves a file save. Lock acquisition, release, retries, task status, and recovery guards retain their current behavior. No schema change or deployment action is required. ## Model Used OpenAI Codex, based on GPT-6, with code execution and repository tools. The exact model build and context window were not exposed to this agent. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass (focused checks pass; existing base failures are documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 18:35:12 -07:00
Devin FoleyandPaperclip	d6d67b00d3	Prevent background workspace scans from refreshing the Git index (#14666 ) ## Thinking Path Paperclip runs background workspace scans alongside real Git writers. `git status` can refresh the index as an optional side effect, taking a lock that makes another operation fail. Disable optional locking in the shared scan subprocess so background observation does not compete with workspace updates. ## Linked Issues or Issue Description What existing behavior does this improve? Workspace Git scans used by changed-file browsing, cleanliness guards, and sandbox snapshots. Current behavior The scan process inherits Git's default optional-lock behavior. Even a clean `status` can rewrite stale stat-cache entries in the index and contend with a concurrent writer. Proposed behavior Always set `GIT_OPTIONAL_LOCKS=0` for the shared scan subprocess while preserving the selected environment and Git's required write locks. Reason and benefit Background reads stop creating avoidable index contention. Git documents this behavior and recommends disabling optional locks for background status: [background refresh](https://git-scm.com/docs/git-status#_background_refresh). Breaking changes None to scan results or required write locking. Later scans may repeat stat checks that would otherwise have been cached in the index. Related scan implementation: #11572, #14253. This avoids one known contention source; it does not identify every historical lock owner or repair abandoned locks. ## What Changed - Disable optional locking at the shared scan subprocess boundary, including explicit caller environments. - Test a clean status against a deliberately stale index and prove an ordinary status would rewrite it. - Test tracked/untracked results with an existing index lock, preservation of that lock and working files, and continued rejection of a mandatory-lock write. - Document the scan behavior and performance tradeoff. ## Verification - Focused stream, workspace-sync, and scheduler suites: 63 tests passed. - Full `pnpm -r typecheck` and `pnpm build` passed locally. Final head `effe6420c77bd18d36af6b093db3a564c04b8b38` passed all 53 CI checks, including complete test coverage, typecheck, build, and browser/runner gates; two unrelated checks intentionally skipped. - Full local test attempts initially had missing embedded-Postgres library symlinks; the dependency setup was repaired. Duplicate local full-suite runs were stopped after full CI completed. This PR does not claim a completed full local suite. - Review regression: real Git honors the supplied `GIT_CONFIG_*` setting and the input environment remains unchanged; all four direct subprocess cases passed. - Reviewed the diff for secrets, customer data, and internal references. ## Risks Low risk. Disabling optional index refresh can repeat filesystem stat work on later scans. Required locks remain enforced; no lock is removed, no failed reset is retried, and workspace mutation guards are unchanged. No schema changes. ## Model Used OpenAI GPT-6 via Codex, with repository inspection, code execution, and tests. Exact model build identifier is not exposed by this session. ## Checklist - [x] Thinking path and model are specified - [x] Checked ROADMAP.md; this is a maintenance correction, not planned feature work - [x] Searched for duplicate and related PRs - [x] Described the issue using the enhancement template - [x] No internal issue references, customer data, or private instance links - [x] Descriptive branch name - [x] Focused regression tests pass - [x] Added tests and updated documentation - [x] Risks documented - [x] Required validation and CI gates are green (full suite validated in CI; local scope documented above) - [x] Greptile is 5/5 with no unresolved findings - [x] I will address review comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:28:07 -07:00
Devin FoleyandPaperclip	0ea6b10967	Record ACP activity and workspace restore failure evidence (#14665 ) ## Thinking Path Paperclip records terminal run failures for operators. A timeout's own log and cleanup output update the run's last-output timestamp, so that timestamp can make a long-silent provider look active. Snapshot runtime activity before finalization and include the saved workspace restore classification to make the next failure actionable without copying tool payloads. ## Linked Issues or Issue Description What existing behavior does this improve? Terminal run diagnostics in the existing opt-in Sentry integration. Current behavior Reports cannot distinguish runtime events from finalization logging and omit the already-persisted workspace restore code. A later successful run also does not establish that earlier workspace files were restored. Proposed behavior Record runtime-event age/count and pending-tool inventory at finalization, before status reads and cleanup. Forward only finite counts, a completeness boolean, and known restore codes through the existing reporter. Reason and benefit Operators can distinguish a silent turn with unfinished tools from recent runtime activity and see restore failures without retrieving private run output. Neither signal certifies productive work or successful recovery. Breaking changes None. Error grouping, execution deadlines, cancellation, recovery policy, and the Sentry opt-in remain unchanged. Related diagnostic work: #14573, #14575, #14639. ## What Changed - Snapshot ACP activity before success/failure finalization, including thrown relay failures. - Forward bounded numeric/boolean evidence and shared workspace restore codes; exclude commands, tool IDs, paths, and arbitrary result data. - Document limitations and test silence, empty streams, timeout, cleanup delay, incomplete tool inventory, and privacy. ## Verification - `pnpm -r typecheck` passed after the final implementation. - Changed suites: 252 tests passed; all 29 database reporter tests subsequently passed after restoring the embedded-Postgres package library symlinks. The migration test also passed (30 database cases total). - `pnpm build` passed during implementation. Final head `fe78dba6f592b1abccac7cdbf341bd2e0b0d30cb` passed all 53 CI checks, including complete test coverage, typecheck, build, and browser/runner gates; two unrelated checks intentionally skipped. - Full local test attempts initially hit missing embedded-Postgres library symlinks; the dependency setup was repaired and database tests passed. Duplicate local full-suite runs were stopped after full CI completed. This PR does not claim a completed full local suite. - Review regression: completed, failed, and cancelled tools are excluded from the pending count; focused activity/timeout tests and adapter-utils typecheck passed. - Reviewed the diff for secrets, customer data, and internal references. ## Risks Low risk, diagnostic-only. The existing tool inventory is incomplete for some runtime events, so the report carries its completeness flag. Event age is measured at finalization and does not prove useful work or identify the underlying provider failure. No schema changes or new capture gate. ## Model Used OpenAI GPT-6 via Codex, with repository inspection, code execution, and tests. Exact model build identifier is not exposed by this session. ## Checklist - [x] Thinking path and model are specified - [x] Checked ROADMAP.md; this is a maintenance correction, not planned feature work - [x] Searched for duplicate and related PRs - [x] Described the issue using the enhancement template - [x] No internal issue references, customer data, or private instance links - [x] Descriptive branch name - [x] Focused regression tests pass - [x] Added tests and updated documentation - [x] Risks documented - [x] Required validation and CI gates are green (full suite validated in CI; local scope documented above) - [x] Greptile is 5/5 with no unresolved findings - [x] I will address review comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 14:27:53 -07:00
DottaandPaperclip	b54b2dc35c	fix: preserve warm Codex turns with incremental managed file checkpoints (#14735 ) ## Thinking Path > - Paperclip manages AI agents and keeps their instructions and files durable. > - Native Codex runners can keep a process alive between compatible turns. > - Managed file collection stopped that process after each turn, which defeated warm reuse. > - Agent folders can contain large images and other files, so full copies on every turn are expensive. > - This change keeps one managed directory for the live session and saves only file changes after each turn. > - Ownership, authorization, instruction changes, and process retirement still control when reuse is safe. ## Linked Issues or Issue Description Related: #13710 introduced native warm session reuse. This fixes managed file collection that still forced those sessions to stop. No duplicate open PR or issue was found. What happened? With managed instructions and warm native Codex enabled, consecutive turns reused a Daytona sandbox but started a new runner process each time. The managed directory collector required process termination before saving files. Expected behavior Compatible turns keep the same process and managed `AGENT_HOME`. Each completed turn saves added, changed, and deleted files before the next turn starts. Unchanged large files do not transfer again. Steps to reproduce 1. Use a native Codex agent with managed instructions and a reusable Daytona environment. 2. Enable warm session reuse and run three turns on the same task. 3. Write a large binary on the first turn, edit a small note on each turn, and delete a file on the second turn. 4. Compare process identity across turns and read the canonical files through the public agent-files API. Paperclip version or commit Reproduced on `d30b03bd8c17604cdab1533eeeeb087aba30e8b1`. Deployment mode Local server with remote Daytona execution; cloud native runner uses the same path. ## What Changed - Retain the managed directory only for the verified owner of a live native Codex session. - Checkpoint each completed turn before releasing the session for reuse. Retry unstable captures, then stop and collect when a warm checkpoint cannot be validated. - Compare metadata and cached hashes, stream only changed file payloads, record deletions, and validate path, content, quota, and authorization before saving. - Rotate sessions when canonical files, loaded instructions, credentials, or launch policy change. Fence stale collection and cleanup callbacks from later owners. - Keep cleanup and recovery aware of the current session owner. Recheck canonical files under the writer lock at handoff, attach the successor collector before fallible bookkeeping, and emit one final save receipt on checkpoint fallback. Preserve storage warnings across unchanged checkpoints. - Add regression coverage and a three-turn Daytona test with independent public API file checks, an unchanged 8 MiB binary, deletion checks, and strict process identity checks. - Document checkpoint consistency, lifecycle behavior, and local run-log counters. - Replace a timing assumption in the Daytona teardown test with explicit transfer-arrival gates after CI exposed an unset release callback. ## Verification - Full local `pnpm -r typecheck` and `pnpm build` passed. Server checks were repeated after the final storage-warning fix. - Runner E2E typecheck and 749 runner E2E unit tests passed. - Focused file checkpoint, directory ownership, instruction collection, native session, and merge tests passed. After review fixes, the managed-directory and native-session suites passed 550 tests, including intervening canonical edits, same-run fresh restore, failed handoff collection, and one-call fallback collection. Server typecheck passed again. The Daytona plugin suite passed 218 tests. The quota-warning regression failed before the fix and passed afterward. - Three real Daytona campaigns passed before the final handoff review fixes. The latest kept PID 547 across all three turns. The first checkpoint copied 8,388,635 bytes; the next two copied 36 and 54 bytes. Public API reads verified the binary, note contents, and deletion after every turn. Test cleanup deleted the sandbox. - The final head was also deployed to an isolated cloud staging instance and passed three UI-triggered native Codex turns with managed instructions. All three retained the same process ID/start time, native session, provider session, runner instance, and Daytona sandbox. Checkpoints copied 8,388,643 bytes on turn 1, then only 52 and 78 bytes on turns 2 and 3; those warm captures also hashed only 52 and 78 bytes. Independent canonical API reads verified every byte of the unchanged 8 MiB binary and the exact note contents after every turn; the deleted file returned 404 after turns 2 and 3. After restoring the original lifecycle and agent-auth configuration, removing the temporary secret, pausing the test agent, and deleting both test sandboxes, independent canonical API reads still verified the entire binary, the final 78-byte three-line note, and the deletion. The native runner flag remained enabled and the final serving revision remained the PR head. - Two earlier staging attempts are preserved as failures and are excluded from the acceptance result: a saved ChatGPT login failed with a provider routing 401, and its subsequent stopped-sandbox retry failed before provider startup with a closed-lease admission error. The successful campaign used a fresh sandbox and a temporary encrypted API-key binding. The stopped-lease retry remains unexplained; this campaign does not establish recovery of that failed sandbox. - All [Paperclip CI gates](https://github.com/paperclipai/paperclip/actions/runs/36750397355) pass on `26ef2ef56a389259246809805c0b34a4747eb86b`, including full test partitions, build, typecheck, runner verification, E2E shards, and the Canary clean public-npm install. Greptile reviewed that exact head at 5/5 with no unresolved review threads or outstanding findings. - Full local repository coverage used the existing CI partitions, but the 40,000-file Git streaming stress test timed out and its local retry was interrupted by macOS thermal emergency sleep; this is not a green full local suite claim. The exact stress test passed on the final head in [CI server shard 2/12](https://github.com/paperclipai/paperclip/actions/runs/36750397355/job/110008294290), in 111.9 seconds. - Repeat the live test with configured credentials and a Linux runner artifact: `pnpm test:e2e:runner -- --id daytona-warm-continuity.runner-codex.daytona.warm-three-turn`. ## Risks - This is a file-level checkpoint, not an atomic snapshot of the whole folder. Background writes after a capture are saved by the next checkpoint or final stopped collection. - Metadata scans still visit all paths. Modified files transfer in full; unchanged files do not rehash or transfer. - Incorrect ownership or reuse could collect the wrong directory. Run ownership fences, current authorization, stable capture validation, and stopped collection fallbacks are covered by tests. - Warm reuse remains opt-in. No database migration or fleet default changes. ## Model Used OpenAI GPT-6 through Codex, with reasoning, code editing, tool use, and test execution. The exact serving model ID and context-window size are not exposed by this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-30 13:33:37 -05:00
DottaandPaperclip	3b4b270650	fix(adapters): preserve ACP terminal failure diagnostics (#14573 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The shared ACP adapter engine records agent failures for operators. > - ACP providers can report a failure category, title, and detailed cause. > - Our patch kept only the category in the saved error, so an operator could not diagnose a failure when tracing was off. > - This pull request preserves redacted provider diagnostics in the run error, transcript, and structured run result. > - Operators can now inspect the provider message and any supplied request ID or stack trace after the run ends. ## Linked Issues or Issue Description Refs #13889 (the diagnostic gap; this PR does not update the bundled Claude version). Refs #14484 (related model-refusal classification; this PR retains diagnostics for all terminal failure categories). What happened? An ACP turn failed with only `ACP agent reported a terminal service failure.` The provider's title and details were available in memory but absent from the saved error and transcript. Expected behavior The run retains useful provider diagnostics even when raw tracing is disabled. Credentials remain redacted. A size limit must report truncation instead of silently removing the cause. Steps to reproduce 1. Run an ACP agent that returns an error-severity typed session failure. 2. Include an HTTP error, request ID, and stack text in its title and details. 3. Inspect the failed run with tracing disabled. Before this change, only the category survives. ## What Changed - Both pinned ACPX patches pass complete error text to the in-memory callback, so redaction happens before truncation. - The shared engine retains the sanitized category, title, and details in `resultJson.terminalSessionFailure` and includes the text in the run error and error transcript. - Diagnostics redact configured environment values even under arbitrary names, unknown launch-environment values, connection URL passwords, run credentials, and common credential syntax. Known boolean settings remain readable, while credential values are redacted even when embedded in other text. Diagnostics remove control characters and invalid Unicode. - Title and detail limits keep escaped transcript JSON below the server's chunk limit. Truncated fields include an omission count. The safe run-result projection preserves a byte-bounded diagnostic preview when the result exceeds its byte budget, with an explicit pointer to the full adapter-bounded run error and transcript. - The existing UI and CLI display the error. Diagnostics do not become assistant output. Issue continuation summaries and session-compaction prompts receive only the generic category, preventing provider text from becoming handoff instructions. Existing quota classification, warnings, timeout precedence, and control-channel failure precedence remain in place. - Regression tests cover real ACP child processes with both pinned versions in one-shot and persistent modes, credential redaction, request IDs after the old 4 KiB cutoff, transcript parsing, storage bounds, and database retrieval of oversized multibyte diagnostics. ## Verification - Full CI on `20ad4f5f1f66c46d2c260e6ad0339cbea607b4cf`: 54 passed, 2 intentionally skipped, no pending or failing checks. Includes typechecking, build, all Vitest shards, Runner checks, browser E2E, and the canary packaging/public-install dry run. - Greptile: 5/5 on this commit. Superagent security scan passes. All review threads are resolved. - Local verification passed: shared ACP engine suite (395 tests); real Claude ACP child-process and diagnostic regressions across both pinned runtimes and both execution modes; run retrieval and model-handoff regressions (59 tests); ACPX patch packaging (16 tests); full typecheck and build. Affected package typechecks and focused tests were rerun after review fixes. - The broad local `pnpm test:run` was stopped after review edits made its cached imports stale. Fresh targeted runs pass, including both affected server suites. Cold-build import failures were also rerun after dependency builds: chat integration (1,063 tests) and tool access (351 tests) pass. The final commit's complete CI matrix is green. ## Risks - Provider diagnostic text is untrusted. This change retains more of it in company-scoped run records. Redaction and size bounds apply before persistence. - Diagnostics are limited to fields the provider supplies. Old runs cannot recover discarded error text. - No schema migration, recovery-policy change, or new Telemetry or OpenTelemetry export. ## Model Used - OpenAI GPT-6 through Codex, with reasoning, repository inspection, code editing, and test execution. The exact serving model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 10:18:30 -05:00
DottaandPaperclip	24beb00575	feat(runner): add rich ACP transport and durable interaction foundation (#14430 ) Add shared rich ACP transport, durable questions and permissions, verified provider packaging, and bounded activity and plan presentation. Keep Cursor, Copilot, and Pi pending their separate provider qualification. Persist interaction settlement before publication, fence failed writes until fresh recovery, and preserve owned-process cleanup. Incorporate reviewed mainline integration with extended harness coverage. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-29 08:56:21 -05:00
DottaandFry	3ca196b0a6	feat(agents): persist agent files across tasks without revision history (#14420 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - An agent needs personal files across tasks and sessions. > - AGENTS.md is one file in that directory. Supporting files need the same persistence. > - The Instructions Editor and agent runs must share one current directory. > - Concurrent runs should apply only the files they change. The last sync of the same file wins. > - This pull request uses existing file transport and removes temporary copies after sync. > - Old instruction-only sessions keep their restore contract. New saves do not create revision history. ## Linked Issues or Issue Description Refs #14325. This replaces its revision-oriented design with persistent agent files. Keep #14325 unmerged. Transport prerequisite #14416 merged first at `d172197117a14b80a1eb2d2835a0e7cce2679656`. This PR now targets master and remains below 100 changed files. Related work: #4513 and #8798 cover instruction tooling. This change handles run synchronization, cross-task personal files, browser editing, and old-session restoration. ## What Changed - Keep one current directory per company and agent. Point AGENT_HOME at a temporary working copy for each active run. Keep task files and provider HOME separate. - Restore text, binary files, and nested folders through workspace transport. Exclude remote agent files from task Git snapshots with a self-ignoring file inside the reserved runtime directory; never write through repository-controlled Git metadata. - Collect after the provider and child processes have stopped. Keep resumable conversation state. - Apply changed and deleted files under the agent lock. The last sync wins for the same file. Unrelated concurrent changes survive. - Remove temporary copies after successful sync, rejected sync, and staging failure. Register ownership before copying so restart recovery can remove interrupted preparation. Retry transient synchronization up to three times. Preserve the original remote lease reference until deletion succeeds; restart cleanup never acquires a replacement sandbox. Do not create captured directories or a conflict-review queue for new runs. - Keep browser editing, stale-draft protection, and streaming binary downloads. Keep the instruction entry and text editor limited to 1 MiB. - Keep historical agent-folder sync failures on their affected runs instead of repeating them above current saved instructions. Preserve legacy candidate review and current browser-save errors. Avoid duplicate quota warnings while retaining separate sync failures when they describe a different problem. - Require target-scoped caller grants for peer instruction access, while preserving self edits, responsible-user checks, and protected-change consent. - Treat full storage as a nonblocking run warning, never an agent pause or run-admission failure. Restore already-over-quota saved folders so ordinary agent cleanup can recover; warn on each run until cleanup. The run detail view shows the warning. - Allow 256 MiB per file, 2 GiB per directory, and 100,000 entries. Hash large files as streams. Check editor-save quotas with metadata instead of hashing unrelated files. - Preserve old native inputs, instruction-only copies, paths, digests, and pending legacy candidates. Adopt old revision heads once. New writes do not append history rows. - Add idempotent migration 0287 and verify upgrades from the preview tables and receipts. - Add nine interactive stories under Agents / Persistent files, including automatic incoming edits, stale browser drafts, and storage-limit diagnostics. ## Verification - Merge candidate: `4f5390107ec6ffd80a76d1d2e85530e66f21d079`, after merging current master and the landed transport prerequisite. Integration required no manual conflict resolution; the feature remains 99 changed files. Full workspace typecheck, production build, token gates, and 715 focused tests passed on this merge candidate. Fresh Greptile review is 5/5 with no unresolved findings. All 55 checks passed, with four conditional skips, including the build, typecheck, browser E2E, and canary dry run. A single retry recovered four jobs interrupted by runner shutdowns; no source changes were required. - Historical-warning UI fix: all 6,834 UI tests across 640 files passed, including regression coverage for three old failures, legacy preserved edits, and warnings scoped to the affected run. Full workspace typecheck, production build, Storybook build, and token gates passed. Browser-verified Storybook playtests passed for Historical Failures After Successful Save, Storage Limit, and Full Storage Run Warning. - Review follow-ups at `4e20c9fb2`: all 18 focused tests passed, including external Git directories, linked worktrees, symlinks, hardlinks, and distinct I/O failures alongside storage warnings. Server and UI typechecks, token gates, and the production build passed. - Storage warning regressions at `0724f3012`: all 33 directory tests and all five heartbeat-list tests passed, with no skips in their successful runs. They cover repeated runs while full, an already-over-quota saved folder, cleanup, warnings retained after unrelated save failures, and bounded warnings in large result JSON. Server typecheck passed after the final warning fixes. - Full workspace typecheck, production build, and token gates passed during this follow-up. Product E2E harness: 631 tests passed across 52 files; harness typecheck passed. Earlier native session/context and directory/legacy collection suites passed 537 tests; Runner unit/transport suites passed 329 tests. - Real E2E at `0724f3012` (before this follow-up): legacy local Codex and native Daytona Codex each passed six tasks, one server restart, seven independent assertions, and cleanup verification. Both prove browser-to-agent edits, agent-to-browser edits, nested/binary restoration, per-file last-sync-wins, a successful run after an oversized save rejection, and cleanup clearing the warning. - Native local Codex also passed the six-task quota flow before the final warning-retention fixes. That pass began at `918d1ed02` while the bounded-result warning fix was being edited, so it is not claimed as exact-final-head evidence. Its final-head rerun failed during embedded PostgreSQL bootstrap before any provider run: the macOS host had 87,365 of 87,381 SysV semaphores occupied. No unrelated services or kernel limits were changed. - The final-source report intentionally records 2/3 cells passed, preserving the blocked native-local attempt: `tests/runner-e2e/results/agent-files-quota-final-20260928-report/`. Earlier failed attempts and provenance notes remain under `tests/runner-e2e/results/agent-files-quota-final-20260928-input/` and the original campaign directories. - Daytona used immutable image `ghcr.io/paperclipai/paperclip-daytona-runner@sha256:5643f0d801417cae3581833a1a3bc6715b325e028602738d2652c44cac5dc6bf` and its exact Linux runner binary. Controller source is `0724f3012`; image source is recorded separately. - Legacy-session compatibility and all three ACP Stop/resume browser regressions passed on the prior validated feature head `169fab46d5af21caa2269b4c1b29b69c933a6951`. They assert the same provider session is retained and interrupted writes are not replayed. Migration upgrade tests also passed earlier. - Nine interactive stories are under Agents / Persistent files, including Full Storage Run Warning. Its playtest and visual browser inspection passed; the warning states that runs continue and the editor remains available. - Prior-head checks on `4e20c9fb2`: 55 passed, two conditional jobs skipped, no failures or pending checks. All eight browser E2E shards and their aggregate passed. Fresh Greptile review is 5/5 with no findings; all review threads are resolved, the security scan passed, and GitHub reports no merge conflicts. - The broad local follow-up test run was interrupted after host semaphore exhaustion affected isolated PostgreSQL instances. It also encountered the existing macOS long-path fixture failure and two timeout failures. This is not a claim that the full local suite passed. Logs are retained; focused storage/warning tests passed. ## Risks - A later sync can overwrite an earlier edit to the same file, including a saved browser edit. There is no text merge or retained version. This is the intended last-sync-wins policy. - A save that exceeds a storage limit is rejected and its temporary copy is discarded. The run itself continues normally, and later runs restore the last saved files with a warning until cleanup. Transient sync failures get bounded retries. An I/O failure partway through a sync can leave some files updated; a failed receipt does not claim whole-folder success. - Larger folders increase copy time, network traffic, and temporary disk usage. Active runs still need working copies. Terminal runs do not accumulate archives. Operators must provision disk for agents and configured concurrency; these limits are not company-wide quotas. - A restored old native session remains instruction-only until a fresh session starts. Its original conflict fence and existing pending candidates remain compatible. - Provider processes close at the collection boundary. Conversation resume remains available, but warm process reuse is lost. - Backups must include the instance filesystem and database. External bundles keep their existing behavior until explicitly moved to managed storage. ## Model Used OpenAI Codex, GPT-6 family. The session does not expose a more specific model ID or context-window size. Reasoning, code execution, and browser tools assisted this change. Real provider E2E uses `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Fry (Paperclip) <noreply@paperclip.ing>	2026-09-29 08:25:56 -05:00
DottaandPaperclip	d172197117	feat(storage): add plain directory sync with conflict preflight (#14416 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs use workspace transport to restore and collect files. > - Some directories belong to the agent across tasks. > - Those directories need plain file transport without task Git state. > - A concurrent file edit must be detected before a merge changes any file. > - This pull request adds optional plain-directory sync and conflict preflight. > - Existing task workspace sync keeps its defaults. ## Linked Issues or Issue Description Refs #14325. This is the transport prerequisite for a replacement of its instruction revision design with current agent files. ## What Changed - Add an opt-in plain-directory transport mode to command and sandbox runtimes. - Add strict merge preflight for file edits, deletions, and directory changes. - Accept identical replay after an interrupted merge. Preserve competing changes. - Set the compiled OpenCode test executable to 0755, independent of the CI host’s file-creation mask. Preserve the original startup error if cleanup also fails. ## Verification - At `ced53ae532ce6966cad5a83575d83db61af98126`, all 212 targeted transport tests passed across workspace restore, remote managed runtime, SSH fixture, and execution-target sandbox suites. Adapter-utils typecheck passed. - Real isolated SSH retry fixture previously passed with `PAPERCLIP_ENABLE_DARWIN_SSH_ENV_LAB=1`; stale deleted files remain absent while gitignored binary bytes survive. - Dependent PR #14420 passed real native local, legacy local, and native Daytona persistence E2E at `169fab46d5af21caa2269b4c1b29b69c933a6951`, which includes all production transport changes through `ced53ae53`; the subsequent two commits only fix the OpenCode test fixture. Nine tasks, three server restarts, and all cleanup checks passed. - A hosted OpenCode fixture failed twice at `ced53ae53`. Reproduced the failure locally and in Linux with `umask 0002`: the compiler created a group-writable executable, correctly rejected by the qualified launch boundary. Explicit 0755 permissions fix the test without weakening the production guard. The focused test and non-root Linux reproduction now pass under that same mask. - Before rebase, head `69e97de0475d34aac5d532e559a405eaf015fd2b` includes the deterministic fixture permission fix and preserves original bootstrap diagnostics. All production transport code is unchanged since the 212-test validation. Fresh Greptile review is 5/5 on this exact head with no unresolved findings. All 54 current-head checks passed, with two conditional skips. The full CI run completed successfully, including the previously failing OpenCode runner shard. - Merge validation on rebased head `c509d79dd190c5cb00dc65edfde209097ff21465`: all five commits are patch-identical to the reviewed branch. All 54 checks passed with two conditional skips, and fresh Greptile review is 5/5 with no findings. One retry cleared an npm archive 404 and a Cursor fixture timeout. ## Risks - New behavior is opt-in. Existing task snapshot behavior retains its defaults. - Generic strict merge preflight remains opt-in. The dependent agent-folder feature rebases changed paths before applying them to provide per-file last-sync-wins; it does not create a conflict-review queue. - This change adds no database migration, dependency, or UI. ## Model Used OpenAI Codex, GPT-6 family. The session does not expose a more specific model ID or context-window size. Reasoning, code execution, and tool use assisted this change. Live provider validation used `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-29 07:59:11 -05:00
Devin FoleyandPaperclip	53aad90b9e	fix: retry sandbox ACP input delivery after gateway failures (#14485 ) ## Thinking Path > - Paperclip coordinates agent work through execution adapters. > - Sandbox ACP sessions send ordered input through a remote file queue. > - A temporary provider 502 currently closes the session during an input upload. > - A lost response can occur after the sandbox has consumed the message, so a blind retry can duplicate input. > - This pull request retries gateway failures with the same sequence and drops consumed sequences at the receiver. > - The session can continue through a brief provider failure without repeating a tool call. ## Linked Issues or Issue Description What happened? A sandbox ACP run can fail with `ACP agent disconnected during request (connection_close, exit=null, signal=null)` when a provider input upload returns HTTP 502. The bridge destroys its local socket on the first failure and can discard the diagnostic before the proxy reads it. Expected behavior A temporary gateway failure should get a bounded retry. A lost response after successful delivery must not duplicate input or reorder later messages. Permanent failures must still close the session. Steps to reproduce 1. Run the real sandbox process bridge with an echo child and a local test runner. 2. Inject a provider 502 before preparation, after a chunk upload, or after final publication and consumption. 3. Send the next input message. Before this change, the connection closes instead of delivering it. Searched open and closed PRs for `ACP disconnect`, `bridge retry`, and `502 sandbox`. Related work: #13287 covers shutdown after bridge loss; #13793 covers large launch envelopes. This change covers ordered input delivery within a running legacy ACP session. ## What Changed - Retry input uploads up to three times for recognized Daytona and Cloudflare HTTP 502, 503, and 504 diagnostics, with 250 ms and 500 ms delays. - Give each upload separate temporary paths and discard already-consumed input sequences, including late publication from an earlier attempt. Clean failed attempts in the background without removing a published message or another attempt’s files. Cleanup cannot delay retries or shutdown. - Keep later input behind the retry. Stop queued input on permanent failure and flush a fixed diagnostic before closing the socket. Neither failure-diagnostic persistence nor shutdown-warning persistence can block teardown. - Add real-process regression tests for lost responses, late publication, retry exhaustion, immediate permanent failure, and diagnostic redaction. - Give accepted run-log file appends up to three seconds to drain before finalization computes the size, hash, and durable copy. Close the run handle to later appends. This waits only for file writes, independently of later DB progress or live-event persistence. If writes remain stalled, return null size/hash metadata and skip the final durable copy so the run can settle. Late writes cannot restart mirroring. - Preserve legacy comment attribution when final log size is unknown by reading existing entries within the unchanged 2 MB scan limit. Storage errors or a three-second read deadline return the evidence already read instead of failing the comment listing; pagination stops at the deadline. The deadline requests cancellation of the underlying local stream or S3 HEAD, GET, and response stream. A separate response timeout returns partial evidence even when filesystem I/O delays cancellation; late reads cannot append evidence or start another page. Each listing retains its existing batches of eight reads, without a shared admission cap that skips readable logs under contention. - Document the retry and log-finalization boundaries in the development guide. ## Verification - Final commit `347daa564b`: [Linux CI](https://github.com/paperclipai/paperclip/actions/runs/36506995168/attempts/2) passed. Greptile Apex review 13 scored this commit 5/5 with no new findings; all 12 review threads are resolved. - The final CI run initially hit a Cursor test timeout and four Discord credential-lock contention failures. All five cases passed in isolation. The two failed shards and their aggregate gate passed on retry without a code change. Those intermittent failures are not claimed fixed by this PR. - `pnpm --filter @paperclipai/adapter-utils typecheck` passed. - `pnpm exec vitest run packages/adapter-utils/src/execution-target-stdin-race.test.ts packages/adapter-utils/src/execution-target-sandbox.test.ts packages/adapter-utils/src/sandbox-callback-bridge.test.ts`: 262 tests passed on the final implementation, including 21 new regressions. The original three fault-injection cases failed before the fix. - The regressions cover failed and indefinitely stalled cleanup, Cloudflare gateway responses and retry exhaustion, permanent errors that must not retry, and teardown while failure logging remains indefinitely stalled. Seven Apex regression cases failed before the review fixes. Adapter-utils typecheck and build passed again after the final review change. - `pnpm exec vitest run server/src/services/run-log-store.test.ts server/src/services/run-log-store-cancellation.test.ts`: all 25 tests passed, including four new regressions that failed before the finalization fix. They cover delayed and failed appends, late-write admission, agreement between the local bytes/summary/durable copy, and a stalled append that exhausts the three-second budget. The timeout case verifies unknown metadata, no final upload, and no mirror restart after late completion. New cancellation tests use the real AWS SDK against a local HTTP server. They verify that stalled HEAD, GET, and response-body connections close on abort and that a subsequent read succeeds. Local range and already-aborted read cases also pass. - `pnpm exec vitest run server/src/__tests__/issues-service.test.ts -t 'readIssueCommentRunLogText\|deriveIssueCommentRunLogAttribution'`: 14 targeted tests passed. The null-size reader case, both storage-error cases, the stalled-read case, and the cancellation/concurrent-listing cases failed before their fixes. The new regressions verify that timed-out reads are cancelled, subsequent listings recover, and two concurrent listings both retain their attribution markers. A read that ignores cancellation still returns partial evidence at three seconds and cannot resume pagination when it finishes; this regression failed before the response-timeout fix. - `pnpm --filter @paperclipai/server typecheck` and `pnpm --filter @paperclipai/server build` passed after the response-timeout change. - Full `pnpm -r typecheck` and `pnpm build` passed earlier in this PR; the affected packages were rechecked after review fixes. - Full local `pnpm test:run` failed in the general-server group: 511 files passed, 40 failed, and 158 were skipped. Failures include embedded PostgreSQL initialization, read-only cache directory renames, a macOS long-path fixture, and a workspace exposure assertion. The PostgreSQL, cache-permission, and long-path failures also reproduce with both changed implementation files restored to baseline commit `24c58e479a`. The exposure suite passes in isolation both on baseline and the fixed branch (28 passed, 3 skipped). CI runs the full suite on Linux. Later local test groups were not reached. - An earlier CI run hit the Telegram retry-timing failure fixed upstream in #14501. The branch includes that master fix. The selected recovery test passed against a fresh, migrated PostgreSQL 16 database. The embedded PostgreSQL runner is unavailable on this Mac; the isolated database was stopped and removed afterward. - No live agent turn was replayed. The tests use local child processes and injected provider failures. ## Risks Retries are restricted to recognized Daytona SDK and Cloudflare bridge gateway-error messages, which survive plugin RPC serialization. Other errors fail immediately. Temporary upload paths are now unique for all command-managed queue writes. Receiver sequence checks prevent duplicate input; retries do not restart an agent turn. Cleanup and failure logging are nonblocking and best effort; session teardown remains the final cleanup boundary. Log finalization now drains accepted local file writes for at most three seconds and ignores later appends on the closed run handle. A timeout leaves final size/hash unknown and skips the final durable upload; an existing partial mirror may remain available, but it is not claimed as a verified final snapshot. It does not wait for later DB progress or live-event persistence. Optional attribution keeps partial evidence when a read fails or times out. Cancellation closes S3 requests and response streams. Local filesystem I/O may finish after the caller deadline, but a late read cannot change the returned evidence or continue pagination. Later listings can retry after storage recovers. There is no schema, authentication, or permission change. Revert this commit to restore the previous behavior. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository inspection, code editing, and local test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally; targeted tests pass and full-suite limitations are documented above - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 19:15:33 -07:00
Dotta Paperclip OpenAI Codex	0be2afcca6	feat(ui): improve task composer controls and pending input (#14322 ) ## Thinking Path > - Paperclip lets operators assign tasks to AI agents and review their work. > - The task composer controls the next message and its assigned agent. > - Operators needed a way to choose that agent's model and effort without leaving the composer. > - The old mode selector, upload button, and input cards made the mobile composer crowded and hid normal messaging during a pending decision. > - Harnesses publish different model and effort capabilities, so the picker must follow the selected agent. > - This pull request adds one responsive composer flow, keeps pending cards visible above it, and protects Codex ACP authentication in the local test path. > - Operators can choose run settings, send a message, and answer a pending card as separate actions. ## Linked Issues or Issue Description Subsystem affected Task composer UI, issue thread interactions, Codex ACP credential handling, and Storybook. Problem or motivation The composer did not expose model or effort for the selected agent. Mobile actions wrapped poorly. Pending questions and confirmations replaced the composer. A local Codex ACP test could also reuse host authentication after the managed key was removed. Proposed solution Put assignee search, model search, exact model IDs, effort, and fast mode in one picker. Use a mobile dialog. Replace the direct-upload plus action and separate mode selector with an Add menu and removable Plan or Ask chips. Place pending interaction cards above the usable composer. Keep these cards pending after an ordinary message unless their creator asks for comment superseding. Replace managed ACP auth files atomically and isolate the test key from host credentials. Roadmap alignment ROADMAP.md does not list an overlapping composer milestone. This change improves the existing task and review flows. ## What Changed - Added the combined assignee, model, and effort picker to both task composers. Search matches agent name, role, and harness. The server uses a curated Codex list by default and honors instance-declared models. Manual IDs remain available. - Added an effort slider for known model capabilities, a conditional Codex fast control, and reset. The picker opens in a modal on mobile. - Added the Add menu for files, supported goals, Plan mode, and Ask mode. Plan and Ask are exclusive removable chips. Keyboard mode cycling remains available. - Adjusted mobile spacing, avatars, wrapping, and Send placement. Removed the composer divider. - Moved pending question, confirmation, review, and related cards above the composer. Ordinary comments now leave question and confirmation cards pending by default. The onboarding prompt retains explicit comment superseding. - Updated the Storybook composer group with responsive states and the production picker. Added UI, service, route, and browser regression coverage. - Isolated Codex ACP API-key authentication, skipped subscription auth merge and shared-home copy-back for remote API-key runs, and replaced the managed auth file atomically. ## Verification - `pnpm -r typecheck` — passed on the final local head. - `pnpm check:token-gates` — passed on the final local head. - `pnpm exec vitest run server/src/__tests__/adapter-models.test.ts ui/src/components/task-chat/ComposerRunSettingsPicker.test.tsx` — 31 tests passed, including role and harness search, declared Codex models, and filtering general OpenAI models. - `pnpm exec vitest run server/src/__tests__/issue-thread-interactions-service.test.ts` — 74 tests passed. - `pnpm exec vitest run packages/adapters/codex-local/src/server/acp.test.ts` — 42 tests passed, including remote API-key copy-back isolation. - `pnpm test:run` — attempted locally; the embedded PostgreSQL test database could not initialize on macOS. The isolated `heartbeat-run-event-sequencing` suite reproduced that environment failure. GitHub CI runs the full test matrix for this head. - `pnpm build` — passed on the final head. `pnpm build-storybook` passed after the last UI change; only server code, tests, and docs changed afterward. - Live local test drive — Codex ACP ran a task with a managed API key. The test agent was restored to its default ACP configuration afterward. - Review the interactive stories under the top-level Composer group with `pnpm storybook`. Check a narrow desktop width and mobile Plan, Ask, picker, and pending-question states. ## Risks - A pending card stays open when an ordinary comment changes the discussion. Its creator can set `supersedeOnUserComment: true` when a new comment should replace it. - Model and effort overrides persist on the task until reset or changed. An unlisted manual model ID may fail when the provider runs it. - Some harness catalogs do not report effort support. The picker hides effort for those models. - No database migration is required. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI GPT-6 via Codex. This runtime does not expose the exact model ID or context window to the task. The model used code execution and browser tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing> Co-authored-by: OpenAI Codex <codex@openai.com>	2026-09-28 23:02:39 +00:00
DottaandPaperclip	992f720262	fix: make runner task context ownership explicit (#13753 ) <!-- Write all pull request text in Simplified Technical English (ASD-STE100). --> ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task descriptions, comments, continuation data, skills, and execution rules enter several agent adapters. > - The same source can be rendered by more than one automatic input carrier. > - Failed resumes can also rebuild input from stale or compact context. > - This pull request gives each Paperclip-owned source one delivery owner and preserves the required transport boundaries. > - It adds deterministic adapter, interaction, runner, and browser tests for these boundaries. > - The benefit is more predictable context delivery with explicit evidence for later live qualification. ## Linked Issues or Issue Description Related: #13144 removes a duplicate environment payload and bounds wake lists. Related: #11360 addresses Hermes resume behavior. This pull request preserves compatible active-session formats while repairing context ownership and stale question creation. What happened? Task descriptions and comments could enter more than one automatic context block. Native transports could wrap a complete model input in a second task envelope. Some legacy and gateway adapters could omit the owned assignment on ordinary tasks or rebuild a failed resume with stale compact context. A continuation could also request a question after newer human comments had arrived. Expected behavior Each task or comment source has one automatic model-facing owner. Distinct comment IDs and repeated wording remain distinct. Fresh fallback attempts rebuild the required full context. A question request is rejected when newer queued human direction makes it stale. Harness access policy remains owned by execution configuration. Steps to reproduce 1. Build a task with a description and current comments. 2. Capture the actual adapter or runner input. 3. Compare source ownership and task-envelope nesting. 4. Queue a human comment before a continuation requests a question. 5. Trigger a failed resume and inspect the fresh retry input. 6. Run the focused adapter, interaction, runner, and browser checks. ## What Changed - Add shared prompt-section selection at the provider-attempt boundary. - Deliver owned assignment context through native, legacy CLI, ACP, gateway, cloud, Pi, Kimi, Grok, Gemini, OpenCode, Cursor, OpenClaw, and Hermes paths. - Rebuild full or compact context after resume recovery changes the attempt. Add native and Claude ACP tests of actual recovery requests. - Preserve custom templates, loaded instruction files, execution policies, and older active-session formats. - Record continuation source metadata and reject stale question creation under the issue-row lock. - Add explicit Product E2E context-integrity profiles, prerequisite gates, credential-isolation checks, and report fixtures. - Bypass service-worker forwarding for same-origin Vite development modules. A real Chromium test fails with resource exhaustion before the repair and passes after it. Production asset caching keeps its existing policy. - Add browser diagnostics and service-worker module-loading regressions. - Add an explicit zero-retry eval option. The default retry behavior remains unchanged. Each campaign records its effective policy. - Remove the model-facing working-directory sentence from four prompt builders. Existing workspace, sandbox, permission, and custom-template configuration remains unchanged. - Align the everyday workflow assertion with the current 47-entry catalog. Compared with current upstream master, the branch carries the context-ownership implementation and its tests, the explicit context-integrity catalog and evidence harness, and the focused browser regression checks. ## Verification Merge assessment: focused regression evidence supports merge. This is not full completion of the original broad qualification matrix. The maintainer has authorized merge after fresh verification of the master integration. - Current head: `bbd52f82114eabf09bc7b1a7e97d54a5b43bbc00`. This integrates current master `2f585ef26a1814fa209715242d1ca791b63e4c4e`. All 14 conflicts are resolved. Cancellation checks, workspace finalization, native Grok support, and both sets of tests are retained. - Current-head Greptile: 5/5, with no blocking findings. The review names this exact commit. All 59 reported checks are terminal: 55 successful, 4 skipped, zero pending or failing. This includes the full root general and serialized suites, separate runner checks, typecheck, build, canary, browser E2E, Docker, and security checks. The successful legacy security status is included in that total. - After integration: workspace typecheck and full build passed. Separate runner checks passed: 2,160 TypeScript tests (10 skipped), 582 Rust tests, and 39 preparation checks. Other passing checks include 621 Product E2E harness units, 376 focused shared/adapter tests, 160 real-database/API tests, 86 Hermes tests, 18 browser-support checks, and Product E2E typechecking. The complete root suite passed in CI. The duplicate local monolithic root run was stopped after that CI result; it is not counted as a completed local pass. - New native recovery coverage retains full assignment, completion contract, and explicit skill selection after safe replacement, for old and prepared input formats. Full native session test file: 136/136 passed. - New Claude ACP coverage captures actual fresh, resumed, and missing-session fallback requests. It verifies one assignment copy, comment order, identical text under distinct comment IDs, and full fallback context. Full file: 33/33 passed. Both affected TypeScript checks passed. - Existing deterministic tests cover source revisions, approval and trust boundaries, completion validation, custom templates, compatible sessions, standalone driver wrapping, and maintained adapter transport requests. - Provider-free browser support: 17/17 passed after the master merge. Service-worker unit tests: 33/33 passed. The module-overload regression failed before the repair and passed after it in real Chromium. ### Fresh live comparisons The new batch ran exactly four Product E2E attempts. All four passed on the first attempt; no retries. Each has six terminal matchers plus the existing browser lifecycle and invariant checks. \| Exact case ID \| Control \| Candidate \| \|---\|---\|---\| \| `core-compatibility.runner-codex.local.plan-revise-accept` \| Passed \| Passed \| \| `local-session-integrity.runner-acpx-claude.local.structured-question-restart-resume` \| Passed \| Passed \| The plan case checks a revised canonical plan and revision-bound approval before completion. The question case restarts the server before submitting the answer, then verifies the continuation completes. Control source is `dfa4e1bda8d50a1a01746603251a9128dbe9d0d6`. Candidate source is `79fcdb5dece501d28064ea9da306603881b46f0c`. They use identical frozen definitions and provider versions: Codex `0.156.0` with `gpt-5.6-sol`; ACPX `0.13.1` / Claude ACP `0.73.0` with `claude-sonnet-5`. The September 24 head added master browser recovery and test-only changes. The September 28 head also integrates newer master changes, including cancellation, workspace finalization, and native Grok. These are frozen-source live results, not exact-head live runs. The candidate received one description copy where the control initially received three. The submitted initial plan envelopes were 7,969 versus 19,097 characters. Question envelopes were 7,592 versus 18,919. These are structural measurements, not whole-provider token or dollar savings. ### Earlier evidence and failed attempts - The preceding fresh batch has four effective passing pairs: OpenCode comment continuation and assigned skill, native Codex comment continuation, and native Claude comment continuation. It retains 11 attempts: eight passed and three failed. - Original failures remain recorded: missing local PostgreSQL library links before task creation; host-sleep cleanup after task/page checks passed; and a Claude control session-open rejection before a model turn. Setup was repaired identically on both worktrees. The permitted unchanged infrastructure retries passed. The underlying Claude provider startup error was not retained and remains unknown. - Older R2 retains 17 passes and one failure across 18 attempts, including eight both-pass native/legacy Codex/Claude pairs. Its OpenCode blank-page failure led to the service-worker repair. R2 is historical evidence: master changed the native fixed prompt and removed duplicate wake environment data afterward. - The September 24 CI run initially failed one unrelated preview readiness test (`ECONNREFUSED` on its local fixture). Its test and production code match master. Isolated local verification passed 28 tests, 3 skipped. One unchanged CI retry passed the full shard: 831 passed, 1 skipped, including all 31 preview-exposure tests. The aggregate CI gate passed afterward. The precise startup cause remains unknown; a port race is a hypothesis, not a proved cause. ### Limits The original wider profile/workflow matrix, repeated trials, and remote Daytona qualification are incomplete. These results support a focused merge recommendation, not statistical equivalence or universal harness qualification. Some usage receipts are missing in both variants, so no token or dollar savings are claimed. The $500 ceiling was preserved using conservative allowances; failed attempts and unknown charges remain in the ledger. Reproduce the focused additions with `pnpm exec vitest run packages/adapters/claude-local/src/server/acp.test.ts` and `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/native-session-runtime.test.ts`. Full checks use `pnpm -r typecheck`, `pnpm test:run`, `pnpm build`, and the separate runner checks. Paid evals require the frozen definitions, profiles, and credentials; do not use `--all` as a substitute for the selected cases. ## Risks - Context placement changes can affect model behavior. Deterministic checks cover the selected paths, but live qualification remains incomplete. - The stale-question guard can reject a request when queued human comments arrived during the run. This is intended. - New stored inputs and model envelopes retain compatibility readers for older active sessions. - Custom templates may intentionally repeat content. - Removing a model-facing working-directory sentence does not change filesystem, command, sandbox, or permission configuration. - The worker bypass applies only to same-origin development module paths. Cache-policy tests preserve private-response handling and production asset caching. Mounted HTTP fixture changes remain test-only. - This PR does not claim measured token savings or statistical equivalence across every harness. ## Model Used OpenAI Codex, exact model gpt-6-astra, with repository tools and code execution. Bounded supporting work used gpt-5.6-luna and gpt-6-luna. The serving context-window size is not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR using the required issue fields - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [x] I have run the focused local checks and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect these changes - [x] I have considered and documented risks above - [x] All current-head Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups for the current head - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 14:49:14 -05:00
DottaandPaperclip	cbc5132e6c	fix(adapters): expose a verified provider stop before workspace restoration (#14311 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent adapters own local or remote provider processes. > - Run cleanup must know when the final provider process has stopped. > - A remote timeout or a lost transport does not prove that the provider stopped. > - Retried provider invocations also make an earlier stop signal stale. > - This pull request adds a verified final-invocation stop callback before workspace restoration. > - The dependent instruction revision change uses that boundary to preserve private instruction edits safely. ## Linked Issues or Issue Description What happened? Adapter completion did not expose a reliable point between provider shutdown and workspace restoration. Cleanup could lose provider-written files, or treat a remote timeout as proof that a process stopped. Expected behavior Cleanup runs once after the final provider invocation has a verified stop receipt and before workspace restoration. An incomplete remote command keeps collection pending. Steps to reproduce 1. Run a remote provider that returns a timeout without a numeric exit code. 2. Let the adapter return or retry the provider. 3. Attempt to collect provider-written files during cleanup. The adapter has no verified final-process boundary to use. This is the prerequisite for the stacked canonical instruction revision pull request. It has no database or UI dependency. Related #13291 verifies remote termination for later recovery; this change exposes the earlier adapter-owned stop boundary before workspace restoration. The scopes do not duplicate each other. ## What Changed - Add a stop callback to adapter execution context and a final-invocation fence. - Confirm local child closure and complete remote exit receipts. Reject remote timeouts, missing exits, transport failures, and SSH exit 255 as stop proof. - Invoke collection once before workspace restoration in eight CLI adapters and at the confirmed ACP stop boundary. - Preserve the stop observation when a later log flush fails. - Run bridge and workspace cleanup in `finally` even when collection rejects. ACP records a safe error without exposing a raw filesystem path. Grok keeps collection errors separate from workspace restore failures and preserves completed provider results when both cleanup steps fail. - Correct the existing Cursor test shell fixture so bounded remote file reads run against real fixture files. ## Verification - Three stop-boundary regressions failed before the callback implementation and passed after it. - Independent prerequisite branch: 377 tests passed across 24 adapter, process-target, and ACP suites. Two added collector-rejection tests failed before the cleanup fix and passed after it. - A third regression reproduced Grok misclassifying a collection failure as failed workspace restoration. Two additional cases covered completed and failed provider turns when collection and restore both fail. The Grok and restore-classifier suites passed 48 tests. - All nine affected package typechecks and affected package builds passed; Grok checks passed again after its classification fix. - Integrated instruction branch: native local, legacy local, and native Daytona each passed three browser tasks with exact persisted bytes, fresh-task readback, history/restore, and explicit conflict resolution. Unchanged warm Daytona passed three turns. Legacy Codex passed all five checks again after the exception-safe cleanup fix. - Alternate staging passed the same three-task native Daytona flow: exact stopped-run save, independent downloaded readback, browser history/restore, and explicit resolution of a real concurrent edit. The deployed source was `14c3d810c9e05625121b3d27767aea9317b03125`, which covers the initial adapter callback. Later Grok cleanup failures are qualified by the adapter tests above. - The final combined native Daytona flow passed again on deployed `2bedd0f23bf4698b1f8b818f6796900647030427`: three fresh tasks proved ordinary instruction edits, independent readback, History/Restore, concurrent board conflict, and explicit candidate resolution. This native staging flow does not claim to exercise the Grok adapter. ## Risks - An unverified remote stop intentionally does not trigger collection. A later controller with verified stop evidence must recover it or report the copy unavailable. - The callback is optional. Callers that do not register it retain their existing behavior. - The callback runs before workspace restoration and can delay cleanup if its caller does not bound its own work. The dependent instruction collector uses bounded reads and retries. A rejected callback still permits bridge and workspace cleanup; it cannot claim an instruction save. ## Model Used OpenAI Codex, GPT-6, with tool use and code execution. The runtime does not expose the exact deployment variant or context-window size. Multiple Codex agents implemented and verified the change. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 08:45:53 -05:00
DottaandPaperclip	4b38db9622	fix(runtime): stream workspace Git snapshots through disk manifests (#14253 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Managed runs copy a selected workspace to an execution environment and restore its changes. > - Git snapshots select the files for that copy and for later recovery. > - A fixed output limit stops large generated trees before the run can start. > - Increasing the limit still keeps the complete filename lists in memory. > - This pull request stores those lists and merge baselines in disk manifests. > - Large snapshots can now complete with bounded filename buffers and explicit failure handling. ## Linked Issues or Issue Description Refs #14194. This is the streaming follow-up to the merged 32 MiB limit fix. Related: #13619 and #11621 cover workspace scan admission and demand. This change keeps the shared scheduler and changes the snapshot data path. ## What Changed - Stream changed, untracked, deleted, and ignored paths through the shared scheduler and the standalone adapter path. - Use SQLite manifests for file selection, duplicate removal, ignored-path lookup, baseline capture, and merge lookup. - Set a configurable 30-minute snapshot deadline. Keep the existing interactive scan deadlines. - Wait for each child process and pending sink write before removing temporary storage after failure or cancellation. - Use NUL archive lists and bounded deletion batches. Preserve unusual names, explicit selection, nested repositories, and source root checks. - Store manifest references in native recovery format v2. Check their location and digest before recovery reads. Keep v1 descriptors readable. - Remove temporary manifests at lifecycle completion. Use fixed-size temporary copy names for long basenames. - Admit each manifest with a SQLite page allowance based on current disk capacity. Keep a configurable free-space reserve and fail explicitly when either limit is reached. - Preserve a host file that replaces a directory deleted by the sandbox, and continue the rest of the restore. ## Verification - Current head `5ab622ec43cd16d35429d79dedee6a5d8e3d2df2` has 54 successful checks/statuses and two skipped Storybook jobs. No checks failed or remain pending. - [CI passed](https://github.com/paperclipai/paperclip/actions/runs/36318966368): typecheck, build, all test shards, E2E, Rust checks, and the aggregate verify job. - [Greptile is 5/5](https://github.com/paperclipai/paperclip/pull/14253#issuecomment-5855670338) on the current head. All four review threads are resolved. Security checks passed. - 229 focused tests passed across Git sync, runtime staging, merge, manifest integrity, native recovery, and the scheduler (214 adapter/runtime tests and 15 scheduler tests). - A real 40,000-file fixture produces 43,428,890 filename bytes. The original standalone and scheduled scans fail. The new test passes all four filename paths, complete staging, exclusion of late files, unusual names, and deletion replay. - Recovery tests reject changed bytes, symlinks, and paths outside the controller state directory. Adapter-utils typecheck passed. - A test executor returned buffered output and caused two retry integration failures. The fixture now uses the shared streaming scheduler. All 13 tests passed with `corepack pnpm exec vitest run server/src/__tests__/heartbeat-project-repositories.test.ts`. The same CI shard now passes. - Ran `pnpm -r typecheck`, `pnpm test:run`, and `pnpm build` locally. Each full local command hit SIGKILL/exit 137 in the 4 GiB container. These local commands did not pass. The current-head CI gates above provide the full verification. - A real-Git disk-capacity regression confirms a typed failure and removal of the incomplete manifest. Repeated writer attempts cannot exceed the permitted page count. - Follow-up real Daytona and separate staging qualification passed with the related archive validator (#14315) and exact-owner finalization fix (#14314). Three successive turns copied back all 60,000 files with 39,828,890 filename bytes and five unusual names. Independent host inventories verified every file and the pinned Git HEAD. Native, provider, session, and process identities stayed fixed; no retry remained. The task reached Done, and its browser-downloaded final proof matched exactly. The reusable regression is #14316, including an assertion of the effective environment idle policy. ## Risks - SQLite manifests use disk space. Each receives one quarter of the available capacity above the host reserve at creation. The reserve defaults to 256 MiB and has a 64 MiB configuration minimum. Disk capacity, filesystem quotas, per-path limits, Git resource use, and execution deadlines remain limits. - Each path and sink chunk has a 64 KiB limit. SQLite connections use a 1 MiB page cache. Invalid or incomplete records fail explicitly. - Restore transport keeps fixed and configured archive exclusions. A remotely created Git-ignored file can be transferred, but the host merge excludes it through the manifest. - Provider archive buffers, Git and tar memory, repository metadata, legacy v1 arrays, and the separate referenced-source resolver retain their own limits. Existing provider safety validators still buffer textual tar listings: Daytona allows 32 MiB and Kubernetes allows 64 MiB. These separate transport limits can stop a sufficiently large restore before merge. This change does not claim bounded total process memory or unlimited transport size. - New descriptors use v2. Existing v1 recovery remains supported; a downgrade cannot read v2 descriptors. ## Model Used OpenAI GPT-6 through Codex. The exact deployment ID and context limit are not exposed in this run. The agent used code editing, terminal execution, tests, and GitHub tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-28 08:40:36 -05:00
DottaandPaperclip	0f14d26123	fix(runtime): allow bounded large untracked workspace snapshots (#14194 ) ## Thinking Path > - Paperclip manages AI agents and their work. > - Remote runs need a snapshot of the task workspace before the agent starts. > - The snapshot lists untracked filenames through the shared Git scan scheduler. > - A generated directory with a few thousand long filenames can exceed the 1 MiB output limit. > - This stops setup and prevents the agent from continuing its task. > - This change gives that listing a 32 MiB bound and keeps the explicit file snapshot. > - Normal generated trees can now pass setup, while larger snapshots still fail at a finite limit. ## Linked Issues or Issue Description Refs #11572 and #12214 for the existing bounded scan and ignore-scan protections. What happened? An agent continuation failed during workspace setup with `Workspace Git scan exceeded its output limit`. A real Git fixture reproduces the untracked-file path: 5,000 long filenames in one generated directory exceed its 1 MiB output limit. Expected behavior The workspace snapshot must support ordinary generated trees with thousands of files. It must keep a finite output bound and select explicit files before staging. Steps to reproduce 1. Commit a base file in a Git repository. 2. Add 5,000 untracked files with long names in one new directory. 3. Call `readGitWorkspaceSnapshot` with the normal scan limits. 4. Observe the output-limit error before this change. Paperclip version or commit Base commit: `640dee1`. Deployment mode Remote sandbox execution from source. ## What Changed - Increase the untracked-file snapshot output bound from 1 MiB to 32 MiB. - Keep explicit file selection, the shared scheduler, the timeout, and the other scan bounds. - Test that 40,000 long filenames above the old 8 MiB bound reach the snapshot. Reuse those files with deeper paths to prove that output above 32 MiB still fails. - Test that files created after the snapshot, including an ignored secret, stay out of the overlay archive. - Check the workspace root identity and reject selected paths with symlinked parent directories before upload. - Test root replacement after path resolution, including root-level selected files. - Preserve existing workspace root aliases by capturing the resolved root before snapshot selection. Test that later alias retargeting cannot change the archive contents. - Stop staging on permission and I/O errors; continue to allow missing files. - Test these failures and preserve selected symlink entries. - Accept valid case-renamed directories by checking ancestor file types. A modeled case-insensitive regression failed before this correction and now passes. - Give the 40,000-file fixture enough time to remove its files. - Document the larger bound and staging behavior. ## Verification - Red: the 5,000-file regression failed with `stdout maxBuffer length exceeded` before the fix. - A separate check through the real server scheduler reproduced `workspace_git_scan_output_limit` on the original code. The revised code selected all 5,000 files. - The late-file regression failed against the first PR revision because the archive contained `drafts/late.secret`. It passes with the final explicit-file approach. - The staging regressions failed before the review fix: a substituted parent directory and permission/I/O errors were accepted. All three cases now stop before upload. - Green: 134 tests passed across `git-workspace-sync.test.ts` and `sandbox-managed-runtime.test.ts` with Vitest 4.1.11. This includes complete selection above 8 MiB and rejection above 32 MiB. - `pnpm --filter @paperclipai/adapter-utils... typecheck` passed after the revision. - The module-boundary check and `git diff --check` passed. - `pnpm -r typecheck` and `pnpm build` stopped in the Rust runner steps because this environment has no `cargo` executable. - The full `pnpm test:run` attempt ended with `SIGKILL` during the general server suite. It did not finish. That full-suite result belongs to the earlier revision. Fresh checks are required for this revision. - The new regression fails at the old 8 MiB bound with `stdout maxBuffer length exceeded`. All 134 focused tests pass with the 32 MiB change. - The affected typechecks and module-boundary check pass. The full local typecheck requires Cargo, which is absent in this environment. - Final verification for `b43e9bc95e55382c6a9bfe200487c164770c8be8`: 54 successful checks/statuses and two skipped Storybook checks. No checks remain pending or failed. - The [CI run](https://github.com/paperclipai/paperclip/actions/runs/36315569674) passes on attempt 2. The first attempt had one unrelated preview-fixture readiness timeout. That exact test passed locally; its CI shard passed on the single rerun. - [Greptile reports 5/5](https://github.com/paperclipai/paperclip/pull/14194#issuecomment-5852045501) on this revision. All review threads are resolved. - [Security review accepts the documented memory tradeoff](https://github.com/paperclipai/paperclip/pull/14194#discussion_r4115149465) for this finite mitigation. The separate streaming follow-up will remove full-list buffering. - This revision also passes affected local typechecks and the module-boundary check. Full local typecheck/build stop because Cargo is absent. The full local Vitest attempt was stopped after about 18 minutes once all remote gates passed; it did not complete locally. ## Risks - Each untracked-file scan can buffer up to 32 MiB instead of 1 MiB. The scheduler still limits concurrent scans and execution time. - Snapshots above 32 MiB still fail with the existing error. Tracked and ignored-file scan bounds stay unchanged. - A workspace that replaces a selected path’s parent with a symlink now fails staging. - Detailed logs from the reported host were unavailable. The exact command that exceeded its limit on that host is unconfirmed. ## Model Used OpenAI GPT-6 through Codex, with reasoning, tool use, and code execution. The runtime does not expose a more specific model build or context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-27 06:42:19 -05:00
Devin FoleyandPaperclip	b2e9e82f05	fix: stop remote Grok runs before continuing queued messages (#14100 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The execution service owns each run and saves messages sent while it runs. > - Interrupt must stop the current executor before it delivers those messages. > - Remote Grok commands did not register the host cancellation control. > - A cancelled task run could still write Done and prevent queue recovery. > - This pull request connects remote cancellation and revokes cancelled run writes. > - Saved input can use the existing queue admission rules after verified cleanup. ## Linked Issues or Issue Description What happened? Interrupting a queued message marked a remote Grok run cancelled before its sandbox stopped. The old run could still post a reply and mark the task Done. Its saved follow-up remained deferred behind execution recovery. Expected behavior Stop revokes run write authority and waits for verified termination. Saved messages remain durable and enter one successor through normal admission after cleanup. Steps to reproduce 1. Run a task with `grok_local` in a remote sandbox. 2. Send a follow-up and use Interrupt while the command runs. 3. Let the old command attempt a task status update after cancellation. 4. Observe the task disposition and the saved message queue. Paperclip version or commit The gap is present in master at `d3e0f0a238`. Deployment mode Authenticated server with a Daytona sandbox. Related work: #14028 and #14046 handle bounded continuation. #13291 covers infrastructure interruption and verified remote cleanup. #13332 addresses atomic recovery holds. This change handles direct Grok operator cancellation and stale task writes. ## What Changed - Register remote Grok cancellation before preparation. Keep command ownership until the host confirms sandbox termination. - Reuse the sandbox cancellation boundary for the direct CLI invocation. Reject fresh attempts after cancellation and preserve workspace restore failure evidence. - Reject writes from cancelled task JWTs and runs with a pending stop. Preserve diagnostic reads and existing conversation error codes. - Recheck run authority under a database lock before task updates and interaction responses commit. - Preserve authorized handoffs that stop their own run. Only the server-issued stop receipt for that request permits the final task update. - Add tests for hung commands, unverified stops, early cancellation, copy-back failures, late Done, late interaction responses, authorized handoffs, exact lease receipts, and one queue successor across concurrent restart sweeps. - Document the cancellation and write-authority contract. ## Verification - Targeted adapter, cancellation-boundary, authentication, queued-message, interaction-service, and activity-route tests passed. The expanded run passed 214 tests; one new test had an incomplete fixture. After correcting the fixture, all 8 selected follow-up cases passed. - `pnpm -r typecheck`: passed on `179c86caf1bf0d89914a503d46e24af7e4b8c557`. - `pnpm build`: passed on the same commit. - `pnpm test:run`: the general-server group completed with 13,521 passed, 99 skipped, and 18 failed tests. It then stopped, so the remaining local groups did not run. Five Slack, email, and wake-batching failures passed on focused reruns after correcting the local environment. The remaining 13 failures reproduce as `EACCES` on rename in unchanged skill-cache code on macOS. Two custom-image suite setup hooks also failed to start embedded PostgreSQL after the machine exhausted shared-memory slots; all 31 tests in that file passed on rerun after the local resource issue was resolved. CI covers all test groups. - CI: 53 checks passed and 2 were skipped on the latest commit, including the aggregate verification gate. The last server shard passed on its single rerun after a preview-server startup timeout. The affected file also passed locally with 28 passed and 3 skipped. - Greptile: 5/5 on the latest commit. Both review threads are resolved. - No live deployment or staging task mutation has been performed. ## Risks - Stopping the sandbox can prevent file copy-back. The result preserves workspace restore failure evidence; termination does not imply restored files. - If provider termination fails, the adapter keeps ownership of its outstanding command and does not acknowledge Stop. - The write restriction now applies to ordinary cancelled tasks. Reads remain allowed. Task and interaction checks add a shared run-row lock to agent mutations. An exact server-issued receipt permits the task request that stopped its own run to complete its handoff. - Existing terminal tasks are not reopened automatically. An operator must correct a historical late Done before its saved queue can continue. - No schema migration or UI change. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository inspection, code execution, and test tools. The precise backend revision and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-26 17:07:07 -07:00
Devin FoleyandPaperclip	4ca404b49a	fix: record safe sandbox restore failure diagnostics (#14064 ) Record a bounded diagnostic for failed workspace and staged-asset restores. Preserve the original error, retry policy, and archive safety checks. Never copy raw provider messages, credentials, paths, or asset names into the log. Nested failures log once; safe fields survive throwing property getters. Verified 129 focused restore/Claude tests, typecheck/build, and green full PR CI. Greptile 5/5 with all review threads resolved. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-25 17:16:13 -07:00
DottaandPaperclip	96bf004a79	fix: use persisted state for lifecycle continuation and retry budgets (#13888 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its control plane decides when a task can continue, wait, stop, or complete. > - Legacy continuation could change when an agent changed its wording without changing task state. > - Shared attempt counts also let repair and infrastructure retries affect each other's limits. > - This pull request uses persisted state and separate, bounded allowances for these decisions. > - If automatic repair stops, the task explains what happened and offers a guarded retry. > - Paired tests and real-provider evaluations verify that Stop, approvals, ownership, and spending limits remain authoritative. ## Linked Issues or Issue Description Related work: Refs #13761, Refs #11126, Refs #13610. These cover obsolete continuation dispatch and retry storms. Open and closed issues and PRs were searched for related lifecycle, continuation, and retry work. What happened? Legacy continuation depended on English wording and progress heuristics. Repair, failure retry, and productive continuation could consume shared counts. When bounded repair stopped, the task showed a technical recovery message without a clear next action. Expected behavior Persisted disposition and owned execution paths determine the next action. Missing disposition prompts bounded agent repair. Explicit work mode determines planning mode. Narrative changes and raw activity counts cannot replenish allowances. An exhausted repair shows a readable notice. An explicit retry checks current controls and preserves the assigned agent. Steps to reproduce Run `pnpm test:lifecycle-baseline`. The paired probes keep structured state constant while varying completion, planning, blocker, and progress prose. Run the explicit `lifecycle-baseline` and `continuation-accounting` Product E2E suites for real-provider coverage. In Storybook, open Design previews / Recovery notice to inspect the production component's normal, pending, acknowledged, unavailable, failure, and mobile states. ## What Changed - Hide the image attachment button, icon, and drop/paste hint in answer composers. Image paste and drop support remains available. - Merge current master and retain both browser regression sets. Use a production-stamped service worker in the offline recovery browser fixture. - Share one state-based legacy continuation decision across immediate, delayed, and recovered dispatch. Bind bounded repairs to their source run and episode. - Remove title and description wording from work-mode authority. Agents can still write requested plans in execution mode. - Persist separate failure-retry and productive-continuation counters. Disposition repair and resource waits cannot consume or reset those allowances. - Validate delayed repair identity, then recheck current gates before provider dispatch. Fence native startup cancellation. - Show Agent needs attention, a plain-language explanation, Retry agent, and expandable details in both task interfaces. Report request progress, acknowledgement, and errors inline. - Store typed recovery notice metadata. Recognize older active notices only through exact stored action and run IDs. Notice text never grants retry authority. - Use the existing recovery-action endpoint for retry. Recheck current action, status, owner, agent availability, dependencies, active runs, pending questions and confirmations, approvals, pause controls, and budget. Duplicate requests do not wake twice. - Add component, page, route, database, contract, and Storybook coverage. Keep the scenario inventory and executable evals here. Historical reports and snapshots live in the [commit-pinned paperclip-evals archive](https://github.com/paperclipai/paperclip-evals/blob/ce3e5afcd4a1184650f586a2b5b8be5874c66c8b/experiments/2026-09-lifecycle-authority/README.md). - Preserve unsaved project fields while the same project URL changes to its canonical alias. Do not reuse data across projects or companies. This separate fix addresses the repeated repository-editor browser failure without changing the browser test. - Keep the development service worker from intercepting Vite module reloads. Update the connection-intent browser fixture to record progress and completion through the agent API. ## Verification Merge preparation on September 25, commit `c1e8e4b7ddd9fbc4913ed55ce21b8e12906c2f97`: - Merged master `bd2030932` and resolved the browser test-list conflict by keeping both sets of regressions. - Deterministic lifecycle baseline: 1,090/1,090 assertions passed; no failures, skips, or missing selected evidence. Unit 423, runner 184, database integration 397, grading 86. - Browser support: 17/17 passed. The offline recovery test first failed with an unstamped development worker, then passed with the production stamp. Its assertions are unchanged. - Focused interaction UI and offline fallback tests: 19/19 passed. Verified the custom-answer composer in Storybook: no attachment controls or hint; entering an answer enables Next. - Recursive typecheck, production build, token gates, and diff checks passed. The worktree is clean. No new real-provider campaign was run. - Current CI and review: [Current PR CI passed](https://github.com/paperclipai/paperclip/actions/runs/36166011243): 55 successful checks and two optional Storybook skips. Greptile scored this exact commit 5/5. Hiding the question attachment controls is an intentional UI change; paste/drop remains available. Earlier recovery UI verification, commit `21be0fec0e90e86b6d662b8ee4831847cd041cdb`: - Recursive typecheck, production build, token gates, and diff checks passed. - Focused UI coverage: 338 tests passed across six suites (336 before the interaction guard, with the two affected suites rerun at 149 passed after it). Covers both task interfaces, the real page mutation, pending/error acknowledgement, stale state, and unavailable controls. - Recovery database integration: 352 tests passed before the interaction guard. The complete recovery-action and mutation-route suites passed 181 tests after it. The two new pending question/confirmation regressions failed before the fix and passed afterward, including resolved-interaction controls. Shared validator suite: 31 passed. E2E catalog suites: 34 passed. - Browser inspection passed for light/dark themes, mobile layout, expandable details, pending retry, acknowledgement, failure, and disabled retry. Storybook renders the production component; its request is simulated. - The broad local run hit two chat callback-order wait failures and was stopped after all CI unit/database/runner shards passed. Both local failures passed when rerun without the competing full-suite process. - CI exposed a repeated project-repository draft-loss race during canonical redirects. A new unit regression failed before the fix; all nine project-page tests now pass, including controls for other projects and companies. Both unchanged repository browser tests passed against a fresh local server. UI typecheck, production UI build, and token gates passed after this fix. - [Earlier PR CI passed](https://github.com/paperclipai/paperclip/actions/runs/36072486798) on `21be0fec0e90e86b6d662b8ee4831847cd041cdb`: 55 successful checks, two optional Storybook skips, and no failed or pending checks. The repository browser shard passed with the production fix. Greptile is 5/5 on this exact commit with no unresolved review threads. The PR is mergeable. Historical, source-qualified lifecycle evidence: - Lifecycle baseline: 1,074 assertions. Native session coverage: 447 tests. Product E2E support: 515 tests. Browser support: 11 tests. Full earlier verification is retained in the archive. - [Real-provider campaign: 8/8 passed, zero retries](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-35881382080-1/index.html), source `e88d210417280140b44a36449027290adcb1aeaa`. Evidence and cleanup checks passed. This includes deliberately exhausted repair cases that correctly remain blocked; it does not mean every task finished Done. This campaign predates the recovery UI change. - Archive migration verified all 16 original JSON files byte-for-byte and all 24 checksum entries. App tests do not need private archive access. [Archive PR #27](https://github.com/paperclipai/paperclip-evals/pull/27) is merged. ## Risks - Agents that omit durable disposition receive at most two repair attempts by default. Prose-only completion exposes missing state rather than silently changing scheduling. - A retry is an explicit board action. The server rechecks current controls. A successful response confirms the task returned to To do; it does not claim that the provider has already started. - Existing notice metadata remains valid. Only older active notices with matching structured evidence receive the new UI. Historical notices without that evidence keep their existing rendering. No schema migration is required. - Old run records require conservative retry accounting. Tests cover old counters, alternating retry lanes, restarts, and exhausted repairs. - Historical snapshots require private `paperclip-evals` access. The app index retains public campaign links. Live campaigns qualify specific sources and scenarios; no new real-provider campaign has run for the recovery UI commit. > This fixes existing lifecycle and recovery behavior and does not duplicate planned core work. ## Model Used OpenAI GPT-6 through Codex assisted implementation, reasoning, code execution, and review. The exact serving model ID and context window are not exposed in this task. Historical real-provider evaluations used Codex model `gpt-5.6-sol`, separately from the implementation assistant. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-25 15:28:11 -07:00
Devin FoleyandPaperclip	bd6caf51bb	fix: preserve restore failure results and stop unsafe retries (#14035 ) Preserve agent output and earlier execution errors when workspace restore fails. Report the restore phase and confirmed saved-plan links. Require verified repair before retrying unsafe archives, while preserving approval states and the retry budget. Verified with full CI, 506 focused regression tests, and Greptile 5/5 with all review threads resolved. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-25 11:34:31 -07:00
Devin FoleyandPaperclip	f3a214fe77	Fix relative symlinks in secondary sandbox repositories (#13953 ) ## Thinking Path > - Paperclip manages agents and their task workspaces. > - A task can use several independent Git repositories. > - Sandbox staging copies secondary repositories from temporary clones. > - The copy changed relative symlinks into absolute host paths. > - Those links broke skill discovery and made workspace restore fail. > - This change preserves link targets while keeping extraction checks intact. ## Linked Issues or Issue Description What happened? Staging a secondary repository rewrites a link such as `.claude/skills/demo -> ../../skills/demo` to an absolute path in a temporary Git clone. That clone is then removed. The link is broken in the sandbox, and Daytona refuses the outbound archive during workspace restore. An agent can finish its turn but still have its run fail during restore. Expected behavior Repository links keep their original targets after staging. Links within a repository remain usable, and changes return to the local checkout. Unsafe outbound archive links still fail before extraction. Steps to reproduce 1. Create a project with a primary repository and a secondary repository. 2. Commit a relative skill directory link in the secondary repository. 3. Stage the workspace for sandbox execution and inspect the copied link. 4. Restore that repository through Daytona. Before this fix, the link points at a removed host temporary directory and restore rejects it. Paperclip version/commit Reproduced on `0f8750627f11d855552abce9a837d7f3b67c9ddf` in the multi-repository sandbox path. Related: #13442 introduced multi-repository provisioning. #13882 adds native Grok but keeps legacy adapters; #12991 addresses Grok instruction isolation and leaves skill staging unchanged. Searches of open/closed PRs and open issues found no direct fix for this copy behavior. ## What Changed - Set `verbatimSymlinks: true` when copying secondary Git clones. This [Node option](https://nodejs.org/api/fs.html#fspromisescpsrc-dest-options) preserves the stored link target instead of resolving it against the temporary source. - Test directory, file, chained and dangling links after temporary-clone cleanup. Assert the copied Git checkout remains clean. - Cover skill-link reads, edits and restore in fresh, warm-adoption and durable-seed workspace modes. - Extend Daytona checks for valid relative directory links and rejected absolute targets. - Document the staging behavior. ## Verification - Four regression cases fail without the source fix: one clone test and three staging modes. - `pnpm exec vitest run packages/adapter-utils/src/git-workspace-sync.test.ts packages/adapter-utils/src/sandbox-managed-runtime.test.ts packages/plugins/sandbox-providers/daytona/src/plugin.test.ts`: 301 passed. - `pnpm -r typecheck` and `pnpm build`: passed. - `pnpm test:run` was started locally, then stopped after the full Linux CI suite passed. It did not finish locally; this is not a full local-suite pass. - Full PR CI: 53 checks passed, two conditional skips, on `07b30ff298baab327a4e60708ade899935688a3f`. Three server shards were interrupted by runner shutdowns; the unchanged mobile repository test timed out waiting for a disabled Save changes button. One same-commit failed-job rerun passed. Original attempts remain in [run 36036538369](https://github.com/paperclipai/paperclip/actions/runs/36036538369). - Greptile: 5/5 on the same head, no review threads or actionable findings. - Diff scanned for secrets and private identifiers; no matches. ## Risks Low risk: the production change is one copy option. It preserves symlinks instead of following or materializing their targets. Daytona extraction guards, workspace exclusions, authentication and database behavior do not change. This prevents corruption in newly staged snapshots. It does not rewrite an already corrupted warm workspace or durable seed; those need fresh staging from the source checkout. No live provider run or customer-task replay was performed. The tests use real Git, filesystem and tar operations with mocked provider transport. ## Model Used OpenAI GPT-6 through Codex, with tool use and code execution. The exact serving model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-24 10:58:49 -07:00
Devin FoleyandPaperclip	4b8ec588f3	Stop duplicating wake context in adapter environments (#13891 ) ## Thinking Path > - Paperclip manages agent work and preserves task context. > - Built-in adapters already include wake context in the agent prompt. > - They also copy the full wake JSON into a process environment variable. > - A large environment entry can prevent the agent from starting with `spawn E2BIG`. > - This change removes the duplicate environment entry and uses the existing prompt delivery. > - The agent keeps its context without extra file transport or new history limits. ## Linked Issues or Issue Description Refs #13144, #13860, #13872, #13793. Large wake payloads can exceed the operating system limit for one environment entry. The launch-envelope fix in #13793 handles the outer transport but leaves that child environment entry intact. Credit to @nickyleach for the prompt-only approach in #13144. This PR applies that part on current master. It does not include that PR's 30-item history limits or recovery-history endpoint. Those behavior changes can be reviewed separately from the process launch fix. ## What Changed - Stop exporting `PAPERCLIP_WAKE_PAYLOAD_JSON` in the shared ACP engine and all ten built-in adapter writers. - Ignore configured values of the retired variable so saved adapter settings cannot restore the oversized entry. Also drop inherited copies in Hermes, which builds its environment directly. - Keep scalar runtime variables, existing prompt rendering, continuation history, resume deltas, gateway bodies, and Hermes JSON template variables. - Document the prompt delivery contract and the migration for custom instructions that read the retired variable. - Test large local and sandbox child-process launches, fresh and resumed ACP turns, SDK delivery, and configured-variable filtering. ## Verification - `pnpm -r typecheck` passed. - Focused adapter utility, ACP, Codex child-process, and Cursor Cloud suites: 340 tests passed. - Hermes execution and prompt tests: 18 tests passed using its package Vitest configuration. - The child-process tests deliver over 128 KB of context through stdin and check the complete text. The ACP test retains 50 complete messages and 50 completed actions, then checks the resumed delta. - `pnpm build` passed. - `pnpm test:run` was attempted, then stopped after it reproduced ten macOS runtime-skill-cache permission failures (also reproduced on unchanged master) and one HTTPS backfill test failure. The HTTPS test passed when rerun unchanged on this branch and master. The complete local suite was not completed; Linux CI provides the full-suite gate. - CI is green on `c3b8191f97`: 53 checks passed and two skipped. Attempt 3 passed the remaining shards without source changes. Earlier attempts hit a lost runner, preview readiness, and chat browser failures. The preview test passed unchanged locally. Local chat tests passed 3/4; the remaining sidebar focus-style assertion also fails on unchanged master. No tests were weakened or skipped to obtain the passing rerun. - The staged diff passed `gitleaks stdin --redact` and `git diff --check`. ## Risks - Custom instructions or scripts that read `PAPERCLIP_WAKE_PAYLOAD_JSON` must use the wake payload in the prompt instead. The variable is absent even for small wakes. - This removes one cause of `E2BIG`. Legacy CLI paths for Gemini, Grok, Kimi, Pi, and Hermes still pass prompts as arguments and retain their existing argument-size limits. Other large environment variables also remain subject to OS limits. - No new context truncation, API route, database migration, authorization change, or production rollout is part of this PR. Existing prompt windows and resume rendering remain unchanged. ## Model Used OpenAI GPT-6 through Codex, with code execution and repository tools. The exact model variant and context window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-23 13:50:10 -07:00
Devin FoleyandPaperclip	8326e33ada	Fix oversized sandbox process launch payloads (#13793 ) ## Thinking Path > - Paperclip manages agent work and preserves context across retries. > - Sandbox ACP runs encode their command and environment into one launch value. > - A long continuation can make that encoded value exceed Linux's exec limit. > - The launch shell then exits before the agent can initialize. > - This PR transfers large command envelopes through a private temporary file. > - The agent receives the complete environment and can start normally. ## Linked Issues or Issue Description Refs #13777. Bug description Sandbox tasks with long retry context fail during ACP initialization with exit 127. The streamed bridge also drops the shell error that explains the failure. Steps to reproduce Launch the streamed sandbox process bridge on Linux with one valid 110,000-byte environment value. Its base64 command envelope exceeds the limit on one exec argument or environment string. Daytona reports `argument list too long: env`, then exit 127. Expected behavior The command envelope must not make a valid child environment too large to launch. A shell startup failure must retain its diagnostic in the run log. ## What Changed - Keep envelopes up to 64 KiB on the existing launch path. Upload larger envelopes in bounded chunks inside a mode-0700 session directory. Set the final payload file to mode 0600. - Read the file without following symlinks and delete it before spawning the child. Remove incomplete uploads on failure. Both streamed and polled bridges use the same envelope. - Preserve stderr when the launch shell fails before the wrapper emits a terminal event. Emit a fixed terminal error and shutdown acknowledgement if a payload cannot be read or parsed, without exposing its contents. - Cover large environments, file permissions, payload deletion, interrupted uploads, missing or malformed payloads, and startup diagnostics. Document the transfer and cleanup behavior. ## Verification - Both large-envelope regressions fail before the fix and pass after it. - Targeted bridge, ACP engine, real-spawn, and stdin-race checks pass: 370 tests. - `pnpm --filter @paperclipai/adapter-utils typecheck` passes. - A gated live Daytona probe on the current sandbox image reproduced exit 127 with the old bridge. The fixed bridge launched the same command successfully. A second probe completed real Claude ACP initialization with a 110,000-byte context value. It did not run an agent task. All temporary sandboxes were deleted. - `pnpm -r typecheck` and `pnpm build` reach the unchanged Rust runner step and stop because this machine has no `cargo` executable. - Full CI passes on `ea816cf58d`: [run 35683853754](https://github.com/paperclipai/paperclip/actions/runs/35683853754). All 53 checks pass; two optional checks are skipped. The local full-suite run was stopped after equivalent CI suites passed; it has no final local result. - Greptile is 5/5 on `ea816cf58d`, with no unresolved review threads. The branch is mergeable. ## Risks Large envelopes require extra upload calls during startup. The temporary data stays inside the private session directory and is removed before child startup or during failure cleanup. Individual child environment values still obey the operating system's native limits. No migration or configuration change is required. ## Model Used OpenAI GPT-6 (Codex), with reasoning, repository tools, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted checks; full-workspace limits described above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-21 20:54:07 -07:00
Devin FoleyandPaperclip	c221589b69	fix: close sandbox process proxies after remote exit (#13777 ) ## Thinking Path > - Paperclip manages AI agents and their tasks. > - Sandbox agents use a local proxy to exchange ACP messages with a remote process. > - ACP keeps the proxy input stream open while it waits for a reply. > - The proxy received a remote exit but kept that input stream open. > - This left the proxy alive and could block later task retries. > - This pull request closes the input handle after a terminal remote event and lets final output drain. ## Linked Issues or Issue Description What happened? A sandbox process could exit while its local proxy stayed alive. During startup, this could appear as a handshake timeout. A later task retry could then stop because the previous process was still alive. Expected behavior The proxy should exit with the remote process status, even when ACP has not closed its input stream. Final output and diagnostics should arrive before the proxy closes. Steps to reproduce 1. Start a sandbox process-session bridge with a child that writes output and exits. 2. Start the generated local proxy and keep its input stream open, as ACP does during startup. 3. Observe that the proxy stays alive after the remote process exits. Paperclip version or commit Reproduced on master at `846336e5a0`. Related: #13272 covers legacy sandbox startup recovery. #13765 covers the task retry UI. This change fixes the proxy process lifecycle. ## What Changed - Close the proxy input handle on remote exit or error, and preserve the exit status. - Stop forwarding input after the terminal event. - Wait for process close in the test helper so output is fully drained. - Test successful exit, failed exit, and spawn failure with input held open in both output modes. Check complete delivery of 208 KiB of final output. ## Verification - Before the fix, all four remote-exit regression cases timed out. - After the fix, all six terminal-event cases pass. - Targeted runtime suite: 362 tests pass across the sandbox bridge, stdin queue races, real ACP spawn, and ACP engine suites. - `pnpm --filter @paperclipai/adapter-utils typecheck` passes. - Full workspace tests hit local platform failures: embedded PostgreSQL fails during initialization, and runtime skill-cache tests fail with `EACCES` while renaming read-only directories on macOS. The affected server code is unchanged in this PR. Those suites pass in CI. - `pnpm -r typecheck` and `pnpm build` stop at the existing Rust runner step because this machine has no `cargo` executable. The CI typecheck and build gates pass. - [CI run 35658635907](https://github.com/paperclipai/paperclip/actions/runs/35658635907) passes all required gates. The first browser shard run passed all 12 tests but hit a GitHub 403 during report upload; the rerun passed, including upload. - Greptile scored commit `9c3c89148e` 5/5 with no review threads. The branch is mergeable. ## Risks The proxy now closes its input immediately after a terminal remote event. Tests cover final output delivery and preserve nonzero exit codes. Existing orphan processes still require cleanup or a server restart. Live sandbox startup needs validation after deployment; this change addresses the confirmed proxy hang and does not establish why an earlier remote process stopped. ## Model Used OpenAI GPT-6 (Codex), with reasoning, repository tools, and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted checks; full-workspace limits described above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes (existing behavior restored; no documentation change needed) - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-21 16:08:23 -07:00
DottaandPaperclip	d9b3a5653e	feat(chat): add initial Slack communication guidance and connection menus (#13760 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Chat connectors let people use the same tasks and agent tools from external conversations. > - Agents need communication guidance that fits the conversation medium. > - That guidance belongs in the original task context, without repeated instructions on each turn. > - Connection owners also need clear settings and a consistent way to remove a connection. > - This pull request adds initial Slack guidance, optional connection instructions, and chat connection menus. > - The benefit is clearer Slack replies with the existing Paperclip workflow and permissions. ## Linked Issues or Issue Description What existing behavior does this improve? Agent replies in Slack and chat connection management in the Apps catalog. Current behavior Slack tasks do not carry a saved communication profile. The catalog shows a separate Manage button and does not offer removal on every chat connection row. Proposed behavior Save Slack guidance when a new conversation creates a task. Restore that original guidance when a model session is rebuilt. Do not append it to ordinary follow-ups. Expose optional additional instructions in Slack Settings. Put Manage and Remove connection in a three-dot menu for all chat providers. Keep Finish setup visible for drafts. Reason and benefit Small answers fit in Slack. Substantial deliverables use ordinary document or artifact tools with a useful Slack summary. Connection settings apply to new tasks and cannot change permissions. Users can remove both active and unfinished chat connections from the catalog. Breaking changes Two additive database columns store endpoint preferences and the initial conversation snapshot. Existing endpoints default to empty preferences. Existing conversations keep their original behavior. Non-Slack guidance is unchanged. Related public context: https://github.com/paperclipai/paperclip/pull/13741 improves native chat recovery. This change adds communication context to those existing execution paths. A search found no duplicate communication-guidance PR. ## What Changed - Add a provider-guidance registry, enabled for Slack first. - Persist optional endpoint communication instructions and capture an immutable snapshot when a conversation creates a task. - Resolve guidance from the verified company-scoped connection. Restore it for fresh native and legacy sessions without per-turn reminders, extra model calls, or extra context queries. - Add the Slack Settings field, validation, audit coverage, and Storybook save/error states. - Add Manage and Remove connection menus for all seven chat providers. Keep the draft setup button. Require removal confirmation and allow retry after failure. - Add regression coverage, an active/draft menu story, and connector documentation. ## Verification All CI checks are green for `5f48df4e0`. Greptile scored this head 5/5 with no actionable findings. No review threads remain unresolved. - Passed `pnpm -r typecheck` and `pnpm build` on PR head `5f48df4e0`. - Passed design-token checks, UI typecheck, and all 20 catalog tests after rebase. Tests cover all seven providers, active/draft removal, confirmation, cache refresh, errors, and cancellation. - Verified the active/draft menu in Storybook. The interaction test runs without browser console errors. - Passed focused guidance, endpoint persistence/isolation, heartbeat trust, native context, ACPX, adapter utility, and CLI recovery tests. Full UI and CLI groups passed (6,512 and 502 tests). - Tested real Slack conversations on staging: concise updates with public links, a planning question with buttons, a saved plan, a saved report, task creation and assignment, and explicit detailed output. Old tasks retained original preferences after an edit; a new task used the changed preferences. Restored the staging setting afterward. - Existing safe progress remained visible without duplicate final replies or private reasoning. - Broad local tests found resource/time-sensitive failures that passed targeted reruns. One Cursor archive-download fixture failed on both this branch and the unchanged main checkout. The full local suite is not claimed clean. All PR-head CI test shards passed, including general, serialized, Runner, and browser suites. The redundant local full-suite rerun was stopped after CI completed successfully. - Live delegation was not tested because the staging company has only one agent. Live testing also found separate latency and runner task-editing capability gaps; this PR does not add connector-specific workflow behavior to hide them. ## Risks - Prompt guidance changes the form of new Slack replies. Explicit requests for detail still take precedence. - The additive migration is idempotent. Conversation snapshots remain fixed when connection settings change. - Native and legacy recovery must preserve the initial context without duplicates; targeted tests cover these paths. - Removing a connection stops new work through the existing lifecycle action. It retains Paperclip task history and does not delete the external app or bot. ## Model Used OpenAI GPT-6 through Codex, with repository editing, shell tools, and browser testing. The host does not expose a more specific model ID or context-window size. No separate model calls were added to the product. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted suites; broad local limitations are listed above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-21 14:14:25 -05:00
DottaandPaperclip	e8c8ba3c19	feat(apps): add experimental MCP aggregator connectors (#13755 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its tool gateway applies company access rules and approval controls to connected apps. > - MCP aggregators expose many apps through one provider endpoint. > - Each aggregator needs its own credential, catalog, grants, and lifecycle in Paperclip. > - This pull request adds independent Zapier, Arcade, Composio Connect, and Executor setup with a common Access → Connect layout. > - A default-off MCP aggregators flag lets operators opt in while we complete provider acceptance tests. > - Agents use the normal Paperclip permissions, Test screen, and gateway after setup. ## Linked Issues or Issue Description Subsystem affected Apps, connection setup, shared contracts, and the remote MCP gateway. Problem or motivation Aggregator endpoints need clear provider setup and correct MCP sessions. Generic setup does not explain each provider's authentication or broad execution tools. Provider approval must preserve the original execution instead of replaying a write. Proposed solution Add four separate connectors behind Settings → Experimental → MCP aggregators. Start with human and agent access, then connect the endpoint and read its tools. Enable tools by default. Use the existing Permissions and Test screens after setup. Keep legacy Composio API-key and child connections intact. Alternatives considered A shared connection for all providers would mix credentials and access rules. Separate provider-specific permission and test screens would duplicate existing controls. Vercel Connect is outside this change. Roadmap alignment Extends the existing MCP Tool Gateway & Apps capability and the Connected Apps roadmap area. This work was requested and reviewed by the maintainer. Related work: #11894, #12630, #12632, #12634, and #12906 concern the legacy Composio broker. #13102 also covers remote MCP pagination. This change preserves the broker path and adds initialized sessions, response matching, and provider resume handling alongside pagination. ## What Changed - Add branded setup and interactive Storybooks for Zapier, Arcade, Composio Connect, and Executor. Use the existing access controls and normal action tests. Do not request a connection name or action choices during setup. - Add the default-off `enableMcpAggregators` flag to settings, managed feature metadata, the catalog, and setup guards. Hidden connections keep running. Legacy Composio connections remain unchanged. - Reuse the vault, grants, policy, and catalog models. Support OAuth discovery, bearer tokens, custom headers, and credential-bearing URLs. Add no database tables or migrations. - Initialize and retain Streamable HTTP sessions by connection and effective credentials. Read paginated catalogs and match streaming responses to request IDs. - Classify unfamiliar aggregator tools as writes despite upstream read-only hints; only exact reviewed read capabilities enter the read-only allowlist. Legacy Composio child behavior is preserved. - Preserve provider authorization links and execution IDs. Support Executor approve/resume, decline, and cancel without automatic replay of uncertain writes. - Preserve Off and Ask first choices during refresh and reconnect. Allow new tools and retire removed tools. Keep agent access updates atomic and preserve an empty agent selection. - Document connector UX rules, provider branding sources, and live acceptance results. - Stabilize the existing Sentry release fixture after its repeated CI failure by reusing one module mock; production Sentry behavior is unchanged. ## Verification - Final head `d11781970`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/35633534900) passed, including broad typecheck, test shards, build, and E2E. All 54 checks pass; 2 optional checks are skipped. Greptile is 5/5, Security Scan passes, and all review threads are resolved. - Passed 27 focused connector Vitest checks and 18 connector-only Storybook browser checks before the flag change. All 85 stories rendered at desktop and narrow widths. - Passed 5 connector lifecycle/server checks and 7 selected flag checks after adding the flag. The latter cover settings, managed defaults, cached catalog visibility, and all four setup routes. - Review fixes passed 13 risk/handoff/lifecycle checks, dedicated session-expiration and transport regressions, 13 selected connector/gateway CI cases, and 10 selected setup/reconnect UI cases. A real Composio connection-list call also succeeded through the refreshed UI on `9ab115f71`. - UI and server TypeScript checks passed. UI build, Storybook build, token gates, and diff whitespace checks passed during implementation. - Real browser and real Paperclip agent tests passed for Arcade, Composio, and Executor. Tested action permissions, denied agent access, reconnect, disconnect, and isolation. Tested Arcade catalog additions/removal and Executor provider approve/resume, decline, and cancel. - Zapier live acceptance is incomplete. Its dedicated provider server is configured, but its credential-copy dialog returned an empty clipboard through browser automation. No live Zapier action is claimed. - The three isolated Sentry release cases pass after the CI fixture fix. - Local verification is deliberately narrow at the maintainer's request. The full local suite, recursive typecheck, and repository-wide build were not run. CI provides the broader checks. ## Risks - Shared MCP transport changes affect other remote MCP servers. Protocol fixtures cover initialized sessions, streaming response matching, pagination, and isolation. - Broad execution tools remain broad permissions. The provider governs actions inside those tools. - Provider handoff links are retained briefly in memory. After a server restart, a one-time link may require reopening the provider dashboard. Paperclip does not replay the original call. - Zapier remains unproven live. Custom-header imports and self-hosted endpoints have fixture coverage rather than a separate live account for every variant. - Turning the experimental flag off hides setup; it does not revoke existing credentials or stop existing connections. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, shell execution, and browser automation. The exact runtime model ID and context-window size are not exposed in this session. A separate Anthropic-backed Paperclip agent performed live gateway acceptance tasks. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-21 12:53:11 -05:00
DottaandPaperclip	45c99a0d06	fix(adapters): default legacy harnesses and connected tools to full auto (#13693 ) ## Thinking Path > - Paperclip lets people manage AI agents and their work. > - Legacy adapters launch provider CLIs and expose connected tools. > - Existing defaults did not consistently grant full automatic permission. > - Remote Claude used a fixed tool list that omitted MCP tools and future tools. > - Direct Codex launches and OpenCode configuration also used narrower defaults. > - This change gives all these paths the same full-auto default as native runners. > - Explicit restrictive settings continue to work. ## Linked Issues or Issue Description Refs #13686. This PR is stacked on that native-runner and task-reassignment PR. Merge #13686 first. Related: #831 (constructed Claude agents), #1935 (adapter-switching permission defaults). ## What Changed - Use actual Claude permission bypass for local and remote runs and probes. Remove the fixed tool list so MCP and future provider tools are included. - Identify actual managed sandbox targets to Claude with `IS_SANDBOX=1`. Do not mark ordinary host execution as a sandbox. - Default direct Codex execution to approval and sandbox bypass, matching agent creation. Preserve explicit false, CLI profiles, sandbox modes, approval policy, and network restrictions. - Set OpenCode's full-auto runtime permission to `allow` for every tool and connection. Preserve the existing explicit opt-out. - Default Gemini probes to the same YOLO mode as execution. Make the legacy ACP `default` alias use `approve-all` for fresh and resumed sessions. - Add default, opt-out, remote, probe, connected-tool, and resume regression tests. Update adapter configuration documentation. - Other adapter paths already request full automatic permission or have no provider approval gate. ## Verification - Full workspace `pnpm -r typecheck` and `pnpm build` passed locally after rebasing onto current master. Targeted adapter/server and legacy ACP tests passed, including defaults, explicit opt-outs, remote launches, connected tools, and fresh/resumed sessions. - Greptile reviewed current head `8ca135eaffcf9cfdba6f1368e896a781a0891d50` at 5/5. The security reviewer acknowledged the documented full-auto requirement. Acknowledged discussions are resolved. - Current head has 54 passing checks. [PR checks](https://github.com/paperclipai/paperclip/pull/13693/checks). The process-adapter signoff browser shard passed on one retry after its first attempt exceeded a three-second issue-run wait. - Six native Claude/Codex real-provider cases passed on their first attempt, with cleanup passing, against the combined branch: plans, reassignment, and backlog creation/status. [Campaign and downloadable evidence](https://github.com/paperclipai/paperclip/actions/runs/35469926548). This does not claim a real-provider run of every legacy adapter. - The live-tested revision is `a37881c824dcd7170380fc4b788732fc743e5da7`. The current head differs only in the corrected heartbeat test expectation; application code is identical. - The campaign result-enforcement job passed. The separate report publisher failed during frozen dependency installation because the trusted workflow's patched-dependency configuration does not match its lockfile. Passing case evidence remains downloadable from the workflow. - Full-suite coverage comes from CI partitions. The separate unsharded local run was stopped after the corresponding CI partitions passed; it is not counted as a completed local run. ## Risks - Missing permission settings now grant all provider operations, including connected tools. OpenCode full-auto also overrides ambient provider permission rules. An explicit Paperclip permission opt-out preserves restrictive behavior. - Claude refuses full bypass as root outside an identified sandbox. Ordinary host deployments must run Claude as a non-root user. Managed sandbox launches include the required marker. - These defaults do not grant additional Paperclip roles, connections, or company access. Existing controller authorization and governance still apply. - This PR depends on #13686. Retarget it to master after that PR merges. ## Model Used OpenAI Codex, based on GPT-6, with code execution and repository tools. The exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-19 16:49:18 -05:00

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