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Author	SHA1	Message	Date
DottaandPaperclip	9247d6f6bb	fix: preserve durable exe sessions across checkpoint and continuation Keep VM attestation out of configuration freshness, defer recovery while the live heartbeat owns finalization, exclude generated OpenCode launch state from checkpoints, and safely restage read-only runtime bundles. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-17 10:54:37 -05:00
DottaandPaperclip	e26d787928	Shorten continuation prompts and verify question tool guidance (#13574 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agents must continue tasks using user answers without losing earlier requirements or approval gates. > - The wake prompt mixed human decisions with prior tool evidence and repeated detailed question instructions. > - Those instructions belong with the question tool, with a short routing hint in the wake. > - The Runner evals need to prove that answers, approvals, and completed work survive later turns. > - This PR shortens the prompts, separates authenticated answers, and adds continuation tests with useful screenshots. ## Linked Issues or Issue Description Refs #13517. This is a follow-up to the merged onboarding skill and Runner E2E work. Related #13539 covers responses received while a run is active; this PR preserves its cases and adds continuation coverage. Existing continuation/recovery and question PRs were searched; none covers this prompt/documentation and eval change. What existing behavior does this improve? The instructions sent when an agent continues a task, the native human-input tool documentation, and the evidence captured by Runner full-stack E2E. Current behavior The wake repeats a long question-tool guide. Human answers appear alongside untrusted prior results. Screenshot capture can finish at DOM load while the task still shows a spinner, even when backend behavior checks pass. Proposed behavior Keep earlier requirements unless the user changes them. Treat clarification as distinct from approval. Give authenticated human responses a scoped field. Keep tool and agent results as evidence. Put detailed question behavior in the tool descriptor and retain one routing sentence in the native wake. Wait for the correct task and loaded conversation before taking screenshots. Reason and benefit Reduce repeated prompt text and make authority boundaries clear. Test that real question cards, later answers, approval gates, and completed child tasks still work. Make screenshots useful for human review. ## What Changed - Shorten shared continuation instructions for legacy and native runners. Separate authenticated user responses from tool results and agent summaries. - Remove the detailed question guide from native wake prompts. Keep its behavior in the canonical `request_human_input` descriptor and existing payload schema. Regenerate semantic contracts and fixture hashes. - Add five continuation cases across four local profiles. Add a dedicated choice-then-text case for native Codex and native Claude. All 22 cells join the shared full E2E campaign. - Cover revised scope, clarification without approval, hostile instructions in a handoff file, and reuse of a completed child after restart. Keep production instructions and fixed user facts. - Capture continuation screenshots only when the intended task and conversation have rendered. Add provider-free browser regressions for loaders and wrong-task capture. - Preserve current master’s extra tool and onboarding cases. The default campaign now contains 166 cells; 35 manual everyday cells remain separate. ## Verification - `pnpm -r typecheck`: passed after replay on current master. - `pnpm test:e2e:runner:unit`: 340 passed. Harness typecheck passed. - `PAPERCLIP_PLAYWRIGHT_CHANNEL=chrome pnpm test:e2e:runner:browser-support`: 4 passed. These tests failed against immediate screenshot capture and passed after the fix. - Focused continuation and native-input tests: 36 passed locally. The tool-authority suite could not initialize embedded PostgreSQL locally, including one isolated retry; its 17 assertions did not run locally. The full remote server shards passed on this PR commit. - `pnpm build`: passed after replay on current master. `pnpm test:run` was attempted locally but hit the same embedded PostgreSQL initialization failure; the remaining local run was stopped after complete remote CI passed. This is not claimed as a full local test pass. - [Full PR CI](https://github.com/paperclipai/paperclip/actions/runs/35232755685): passed on `6a22128c14f4552d0613a6d9a25955db4a1ed02f`. All server/chat/workspace/serialized shards, browser shards, Runner checks, typecheck, build, canary and policy checks passed. The isolated native Runner build and security checks also passed: 57 successful checks, with two expected Storybook skips. - Greptile reviewed the exact PR head at 5/5, with no findings or unresolved review threads. The PR has no merge conflicts. - [Live question-docs report](https://pages.paperclip.ing/runner-e2e-question-docs-35227647794/): 3/3 passed at source `83dd132f2` before replay on master. Native Codex and Claude each asked a choice, waited, asked a text question, and saved both answers. Claude also passed a completed-child restart case. All three native turns are checked for absence of the old question block. - [Earlier continuation report](https://pages.paperclip.ing/runner-e2e-continuation-35154943615/): all five continuation cases passed on native Claude. The report retains campaign and revision provenance and separately shows two unresolved onboarding behavior failures. - [Before/after prompt report](https://pages.paperclip.ing/runner-prompt-comparison-20260917/): full text, current recorded Claude inputs, and reproducible reference-token counts. The controlled wake comparison removes 401 reference tokens; the net counted input reduction is 339 after charging the larger tool description. These are text-size estimates, not measured billing savings. ## Risks - Prompt wording affects model behavior. Live results cover the stated cases, not every provider or conversation. Legacy profiles are registered but were not rerun for this change. - The optional continuation field changes prompt data only; there is no database migration or new production API. - Authenticated answer projection excludes generated summaries and agent-resolved interactions. It preserves the answer’s question or approval scope. - The screenshot guard can expose UI loading failures that earlier runs hid. Backend grading alone no longer makes those captures valid. - The two prior onboarding failures remain separate product issues: work before acceptance and a missing saved plan. This PR does not claim the entire onboarding suite passes. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository tools, code execution, and browser verification. The exact deployed model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — targeted tests above; the full local database-startup limit is documented - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-17 09:32:54 -05:00
DottaandPaperclip	11921075a4	Add first-task onboarding skill and Runner E2E coverage (#13517 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The first task helps a new user define and approve useful work. > - That workflow needs reusable instructions and tests against the production experience. > - Native Codex and Claude must load the assigned skill, including after resume. > - Maintainers need recorded conversations and precise failed checks to judge regressions. > - This pull request adds the first-task skill and a suite in the shared Runner E2E harness. > - It keeps behavior results separate from informational quality scores and incomplete recordings. ## Linked Issues or Issue Description What existing behavior does this improve? The first onboarding task and the Runner E2E report used to review it. Current behavior Onboarding embeds its policy in a hidden brief. Native Codex drops the skill-instructions setting at the Rust boundary. The shared E2E harness has no onboarding suite or full conversation view. Proposed behavior Assign and invoke `/first-task` for the onboarding task. Send selected Codex skills as structured protocol inputs. Run twelve scenarios across legacy Codex, legacy Claude, native Codex, and native ACPX Claude. Include all 48 cells in full campaigns. Show recorded chat, question and approval cards, exact checks, instructions, and billing in the shared dashboard. Reason and benefit Measure the real onboarding experience before changing prompts. Distinguish infrastructure failures, behavior failures, and unexercised journey steps. Breaking changes No database migration or production API change. First-task instructions now live in an assigned skill. The user-edited persona is preserved; the skill includes the maintainer-approved proposal-mode mapping and saved-plan requirement. Related: #11043 is earlier onboarding work. #13422 already fixes native Claude model pinning, context delivery, and read permissions on master; this branch includes those fixes through its base. The new Claude recovery test supplements them. ## What Changed - Extract and assign the first-task skill while retaining the production greeting and opening question. - Carry the Codex skill-instructions flag through thread start and resume. Resolve explicit task skill references only against assigned skills and send native skill inputs. - Invoke an unambiguously selected assigned skill through Claude ACPX’s native slash-command parser on initial and resumed turns, retaining the entire task/wake envelope as its argument. Do not carry that invocation into ordinary tasks. - Restore the saved single-task proposal modes: confirmation card, or saved plan with revision-targeted checkbox approval. Explicit plan requests also require a saved plan. - Add first-response and complete-journey cases with fixed user facts, acceptance checkpoints, durable outcome checks, and accounting for child runs. - Fail the eval when choice questions have fewer than two real options. Recognize planning documents without treating them as completed work. - Add optional, bounded quality judging as explicit post-processing. - Render full conversations and static interaction cards in the shared report. Conversations start folded. Show original and regraded results and incomplete journeys distinctly. - Keep credential-persistence scanning outside the first-task behavioral suite; retain public evidence redaction. - Refresh generated capability references after the API-reference edits. - Correct shared native question guidance and tool schemas: choices need at least two meaningful options; open-ended questions use canonical text fields with the required compatibility payload. Verify both formats through real tool-authority persistence. - Disable announcements automatically for every isolated Runner E2E process and label the gallery environment/provider/target explicitly. - Remove CI races in the GitHub connection browser test and native session recovery test by waiting for the actual async work before asserting its results. ## Verification - `pnpm exec vitest run server/src/services/onboarding-first-task-assets.test.ts server/src/__tests__/issue-onboarding-first-task-routes.test.ts`: 19 passed. - `pnpm --dir packages/paperclip-runner exec vitest run src/drivers/acpx/runtime-host.test.ts src/drivers/acpx/native-skill-prompt.test.ts src/cli/acpx-runtime-sidecar.test.ts`: 70 passed. Native command forwarding and the 1 MiB input boundary both failed before their fixes and passed afterward. Coverage includes changed skills on reopen, approval context, and an ordinary subsequent task. - Runner E2E unit suite: 306 passed. Harness typecheck passed. The 64 first-task fixture and grader tests also pass. - Full repository typecheck and build passed locally. Server typecheck and Runner build passed again after the native-command change. - Full GitHub Actions CI passed on `23e56447b`: all server/workspace/browser shards, Runner verification, typecheck/release registry, build, canary, policy, and Docker checks. Greptile reviewed this exact head at 5/5 with no unresolved threads. The earlier broad local run had database startup/timing failures that passed isolated retries; the complete remote suite is green. - Merge verification against current master: 312 harness tests and 13 native recovery tests passed. Regenerated semantic contracts and fixture hashes pass their consistency check. Full local typecheck and build also passed on the stacked queue branch. After merging the latest master and preserving the GitHub setup timing regression in the split browser suite, both focused GitHub browser tests passed. Three CI timing/startup flakes passed local verification and one remote retry; all latest-head checks are green. - Real pinned Claude SDK and Claude ACP JSON-RPC probes against a local mock API confirmed that `/skill-name` expands the assigned skill body before the model request and retains the task arguments. A prose mention does not. The probes made no paid model calls. The ACP probe used the current first-task skill body and retained the wake arguments. - [Full 48-case campaign and report](https://pages.paperclip.ing/runner-e2e-first-task-35053063880/): 44 passed after three interrupted Codex cases completed in targeted reruns. Original results, regrades, and all 51 executions remain in the report provenance. - [Claude campaign after the shared-question fix](https://pages.paperclip.ing/runner-e2e-first-task-claude-35099525201/): 10/12 passed with zero single-option failures. All 12 recorded the current assigned skill and corrected guidance. The failures exposed skipped skill invocation and a missing saved plan. This PR adds native command invocation and explicit saved-plan instructions; the subsequent report below still shows behavior failures. - [Fresh 12-case Claude report](https://pages.paperclip.ing/runner-e2e-first-task-claude-35102737804/) at `78452129e`: 10/12 pass after correcting two false proposal-matcher failures. The recordings said “Here is the task I will create and run/complete” in approval cards; the old matcher missed that word order. Regression tests failed before the fix and pass after it. Original results and offline regrade provenance remain linked. No agent rerun was needed. Zero single-option-question failures; two behavior failures remain: direct work before acceptance on a plain first message, and an explicit plan request without a saved plan. Neither check was relaxed. The follow-up `82087ac7e` fixes command-prefix size accounting; `94aefb1f3` fixes only that proposal matcher. - Report browser checks confirm folded conversations, rendered cards, explicit Local/Daytona labels, and no page errors. The published-object audit scanned 1,306 text files across 2,154 objects with no credential-format findings or prohibited files. Image pixels and unknown token formats are outside that scan. ## Risks - Model behavior is nondeterministic. One campaign is evidence, not a guarantee. The two remaining Claude behavior failures are visible in the report and require further product work; this PR does not claim all onboarding scenarios pass. - The suite checks persisted Paperclip effects. It cannot prove the absence of arbitrary external effects. - Historical recordings can miss later journey steps. These remain incomplete, never passes. - Native profiles switch runtime after the production onboarding wizard because it does not yet expose a native option. - Quality scores are informational and cannot override behavioral failures. ## Model Used OpenAI Codex, GPT-6, with reasoning, repository tools, and code execution. The exact deployed model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-16 14:24:32 -05:00
Devin Foley	d08abcba15	ci: cut PR wall clock from ~16 to ~6 minutes (#13521 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Every pull request runs the Trusted PR CI workflow before merge > - The test suites roughly tripled in six weeks, and shard balance did not keep up, so PR runs crept from ~4 to ~17 minutes > - Slow CI delays every merge and every contributor > - This pull request rebalances the shards from fresh measurements, splits the largest test files, reuses the Rust build cache in three more jobs, and takes the policy job off the critical path > - The benefit is a PR wall clock near 6 minutes with the same coverage ## Linked Issues or Issue Description What existing behavior does this improve? PR CI wall clock. A typical green run took 16-17 minutes. Two months ago it took about 4 minutes. Subsystem affected The Trusted PR CI workflow (`.github/workflows/pr-trusted.yml`), the shard-duration manifests, the vitest shard runner scripts, the `paperclip-runner` package scripts, and the dry-run branch of `release.sh`. Current behavior The shard-duration manifests were stale. The general-server manifest had durations for ~400 of 649 suites. The e2e manifest was missing 14 of 29 specs. Stale median weights made shard steps range 417s-806s (server) and 277s-745s (e2e). Three jobs each paid a ~3m40s cold cargo release build. Every test lane waited ~60s for the policy job before it could start. Proposed behavior All lanes finish in a narrow ~200-290s band. The manifests carry fresh measured durations for every suite. The three largest test files are split so no single file caps a shard. The Rust cache restore runs in every job that builds the Runner binary. Test lanes start as soon as the gate resolves. Reason and benefit Merges stop waiting on CI. The projected wall clock is ~6 minutes for the same test coverage. ## What Changed - Rebuild `scripts/general-server-shard-durations.json` (646 suites) and `scripts/e2e-shard-durations.json` (all specs) from per-suite completion timestamps in runs 35036001734 and 35024948947. - Move the PR server lane to the release-verify shape: `general-server-without-chat` across twelve duration-balanced shards, plus the chat integration suite split by collected test location across three dedicated lanes. - Split `tests/e2e/chat-adapters-ui.spec.ts` into `-providers` and `-messaging` specs, and `tests/e2e/agent-chat.spec.ts` into `-sessions` and `-projects` specs. Each pair shares fixtures through a `.shared.ts` module. Playwright collects the same test sets (39 and 20 tests). - Raise e2e shards to eight and serialized shards to nine. - Run the runner package's `check:all` as four matrix lanes: `check:static`, `check:runner`, and two native vitest `--shard` halves. The union is exactly `check:all`. - Add the read-only Rust cache restore (toolchain pin, `save-if: false`) to the Canary Dry Run, Build, and Typecheck jobs. - Make release.sh preview publish payloads concurrently in batches of eight during `--dry-run`. The real publish path stays strictly serial. - Drop the policy-job lockfile artifact chain. Each lane installs with `--frozen-lockfile` and falls back to an inline `--resolution-only` regeneration. The policy job stays a required check through the `verify` and `e2e` aggregates. - Update the shard-count mirrors and workflow assertions in the partition and gate tests. ## Verification - `node --test scripts/__tests__/run-vitest-stable-shard.test.mjs scripts/__tests__/e2e-shard.test.mjs` — 30 pass. - `node --test '.github/scripts/tests/'*.test.mjs` — 410 pass. - `node --test scripts/__tests__/release-verify-workflow.test.mjs scripts/cloud-source-verification.test.mjs scripts/__tests__/release-dry-run-notes.test.mjs` — 42 pass. - `playwright test --list` collects 39 tests across the chat-adapters split and 20 across the agent-chat split, equal to the original files. - A local vitest collection of the chat suite partitions 995 tests into 498/497 line shards. - Projected shard weights: server 230s x12, chat ~143s x3, e2e 207-242s x8, serialized ~216s x9. ## Risks - The split spec files reorder tests relative to the original files. Every describe seeds its own company, so the specs stay independent; a hidden cross-describe dependency would surface as a deterministic failure in one shard. - The inline lockfile fallback changes install behavior for manifest-changing and stacked PRs. The policy job still validates resolution as a required check. - `release.sh` changes are confined to the `--dry-run` preview branch. The publish loop is untouched. `bash -n` passes and the release dry-run tests pass. - One PR now schedules ~44 fleet runners. If the RunsOn fleet caps concurrency, queueing may absorb part of the gain; watch the first runs. ## Model Used - Claude Fable 5 (`claude-fable-5`, Anthropic), extended thinking, with tool use (shell, file edits) in Claude Code. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-16 11:45:14 -07:00
DottaandPaperclip	9fd2e50310	feat: create company skills from runner tasks (#13538 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Runner gives agents tools to change company resources. > - Users need agents to save reusable skills during a task. > - A saved skill needs a visible result that users can inspect and edit. > - This pull request adds `create_skill` and a task feed card linked to Skill Studio. > - Users can open the saved skill from the task and edit the same resource. ## Linked Issues or Issue Description Subsystem affected Runner tools, company skill storage, task feed, and Skill Studio. Problem or motivation The Runner has no dedicated tool to create a company skill. A user cannot follow a creation result from the task feed to the saved skill. Proposed solution Add a company-scoped `create_skill` tool. Save the skill with the existing company policy. Add one creation card to the task. Open a named sidebar tab from that card. Let the user open the same skill in Skill Studio. Alternatives considered An agent can write a local file, but that file is not a company skill. A second document copy in the task would become stale after a Studio edit. The sidebar therefore reads the saved skill directly. Roadmap alignment This extends the shipped Skills Manager, Skill Studio, and Skills Store milestone. The maintainer requested and approved this scope. Search found no duplicate `create_skill` PR or issue. Related UI validation work: #8715. This PR does not change that validation display. ## What Changed - Add the real Runner tool, its contract, and its mock implementation. - Validate the complete SKILL.md and derive company, task, agent, and run identity from authentication. - Apply the existing company skill policy. Do not assign the skill to an agent. - Make keyed retries return one skill and one creation event. Reject conflicting retries. - Make concurrent file creation safe. Never replace an existing published skill during creation. - Add a creation card, a named sidebar tab, and an Open in Skill Studio action. - Show saved Studio edits when the user returns to the task. - Add storage, policy, mode, retry, UI, and Product E2E tests. Document the tool. - Fix deleted-name reuse, onboarding panel persistence, immediate feed refresh, and mock validation parity from review. - Serialize Studio file edits and renames with skill deletion and recreation. Reject stale editor requests before they can change a replacement skill. - Generate the standalone mock parser and validator from the production contract. Use portable UUIDs so the browser scenario bundle builds. ## Verification - All latest-head PR checks pass on `145dd76a5`, including all server shards, browser E2E, Runner verification, build, typecheck, and release dry run. Greptile: 5/5 with no open findings. An interrupted CI runner was retried successfully. - `pnpm -r typecheck`: passed. - `pnpm build`: passed. - `pnpm check:token-gates`: passed. - Review regressions: 73 storage tests, 6 real API tests, 63 UI tests, and 61 semantic runtime tests passed. Parser synchronization passed. - CI exposed existing fire-and-forget Sentry test races. Reproduced the resumption race locally, then synchronized the related sweep and finalizer assertions on the actual report; all 27 tests across the three affected files pass. - Runner scenario browser build and strict content-security-policy check: passed. - Runner suite: 2,012 tests passed; 10 skipped. - `pnpm test:run`: the general-server batch had 12,416 passes and two failures. The old tool-count assertion was fixed; all 16 authority tests then passed. The chat webhook test had a socket error; it passed four isolated reruns. - Both workspace test groups passed. The isolated route suites completed. Two socket failures in the initial route batches passed on individual reruns; all remaining 61 files passed. - Product E2E `create-skill-studio`: passed with local Codex and local ACPX Claude. - Manual browser test: submit a task, observe the real tool call and creation card, open the sidebar, edit in Studio, save, and return. The task reached Done. The saved second revision and sidebar tab survived a server restart. - The new companion headless Runner Eval passed. Companion coverage PR: https://github.com/paperclipai/paperclip-evals/pull/23. Daytona was not run because no immutable runner image was configured. ## Risks - Database writes and local file writes cannot share one transaction. Recovery accepts only an exact file-for-file retry after a database rollback. Conflicting files remain untouched. - The sidebar displays the current skill. The feed card remains the historical creation receipt. - No database migration, dependency, or workflow change is included. - Remote Daytona behavior still needs a run with a configured immutable image. ## Model Used OpenAI GPT-6 (`gpt-6-astra`) handled design, integration, review, and browser verification. OpenAI `gpt-5.6-luna` assisted with bounded implementation and eval work. Both used code execution and tool access. The host did not expose the context window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-16 13:01:58 -05:00
DottaandPaperclip	18989a9e73	docs: add eval guide, authoring skills, and public history hub (#13535 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Its evaluations test both the Runner and complete product workflows. > - The guides and run histories are in separate places. > - The shared Evalbook viewer can make the test boundary unclear. > - This pull request names the two families and adds a guide, authoring skills, and a public hub. > - Contributors can choose the correct test and inspect its history. ## Linked Issues or Issue Description Issue type Missing documentation. Where is the issue? Runner and Product E2E evaluation guides, case-authoring procedures, and public result navigation. What's wrong? There is no single entry point. A report format can be mistaken for an execution boundary. There are no dedicated case-authoring skills for these two families. Suggested fix Add a guide and three skills. Link both existing histories from a public hub. Keep existing campaign URLs and grading unchanged. ## What Changed - Add `doc/evals.md` and links from existing guides. - Add the `paperclip-evals`, `add-runner-eval`, and `add-product-e2e-eval` skills. Install copies in `~/paperclipai/.agents/skills`. - Add a static hub builder that reads the existing public history feeds. - Show a dated snapshot for each family. Label partial campaigns and preserve measurement dates across report refreshes. - Document publication and refresh commands for https://pages.paperclip.ing/evals/. ## Verification - Seven Python summary tests pass: `python3 -m unittest discover -s scripts/evals-hub -p 'test_*.py'`. Run these checks directly; this PR does not modify package scripts. - All three skills pass the skill-creator `quick_validate.py` check with `/usr/bin/python3`. - Build tested with saved history fixtures and the live public feeds. - Desktop and mobile browser checks pass. The mobile page has no horizontal overflow. - Published https://pages.paperclip.ing/evals/. Browser check: HTTP 200, no page errors, all eight links return HTTP 200, no mobile overflow. - Independent skill exercises found the existing Notion-decline case and a direct Runner permission-denial case. Roster validation with an explicit run ID passes. - Missing refresh measurement date: regression fails before the fix and passes after it. - `git diff --check` passes. - No paid evals were run for this documentation and reporting change. The preceding head passed typecheck, build, server/workspace tests, runner verification, browser E2E, and the canary dry run. Checks for the latest commit are pending. Local repository-wide typecheck, test, and build were not repeated because no product code changed. ## Risks The hub is a dated static snapshot. It can lag behind the linked histories until an operator refreshes it. A changed history schema stops the build. Existing archives and grades are not modified. The published guide link is pinned to the reviewed commit so branch deletion cannot break it. Later builds can use master. ## Model Used OpenAI gpt-6-astra for implementation and review. OpenAI gpt-5.6-luna for documentation and independent skill checks. Both used repository tools and code execution. Context window sizes are not exposed by this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green (latest commit pending) - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups (preceding head was 5/5; latest commit pending) - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-16 08:41:06 -05:00
Dotta OpenAI GPT-5.6 Luna Paperclip	cceeb0aa66	test(runner): add everyday workflow evaluation harness (#13474 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner must support project work, delegation, hiring, and service access. > - Browser tests exposed lost connection access, rejected helper events, and stalled recovery. > - Some eval failures also came from incorrect fixtures and decision controls. > - This pull request fixes those paths and adds eight everyday workflow stories. > - The tests retain observed failures and verify delivered files independently. > - The benefit is repeatable evidence for common user tasks and their remaining gaps. ## Linked Issues or Issue Description Related work: #13404 contains earlier workflow fixes. #13300 and #13470 changed the CI contracts used by the harness security tests. Merged companion: [paperclip-evals#22](https://github.com/paperclipai/paperclip-evals/pull/22). What happened? Native ACPX sessions did not receive the assigned connection gateway. Codex helper events could arrive before their spawn receipt and fail thread validation. A parent continuation could take a shared workspace before its child retried. A failed native continuation could leave the task status without a clear recovery blocker. The eval harness also confused tool approvals with new connection requests and could reject a valid delegated download. Expected behavior Keep assigned gateway access and its approval checks. Verify helper lineage before accepting helper progress. Let a waiting child proceed before automatic parent recovery. Preserve a failed task's recovery ownership. Grade the actual requested workflow and its delivered files. Steps to reproduce Run the everyday workflow suite with the native Codex and Claude profiles. Exercise service approval, connection refusal, delegated project work, and teammate reuse. The commands and case requirements are in `tests/runner-e2e/EVERYDAY-WORKFLOWS.md`. Use `pnpm test:runner-recovery` for controlled crash and replacement cases. ## What Changed - Pass the scoped connection gateway binding through the native ACPX host and sidecar. - Recognize Codex helper lineage from parent metadata and spawn receipts. Verify early helper events with `thread/read`. Keep helper events separate from root completion authority. - Guide agents to use persistent hiring, child tasks, dependency records, and a blocked handoff while waiting for a child. - Defer automatic parent recovery while a child has an active execution path in the same shared workspace. Allow parent recovery when the child needs review. - Record Blocked status and recovery evidence when a failed native continuation needs reconciliation, including existing active or escalated incidents. Preserve their owner and retry budget. - Add eight browser-driven workflow cases. Use real decision controls, explicit child feedback delivery, managed hiring credentials, and independent ZIP checks inside a bounded Docker sandbox. Verify sandbox availability before task creation. Record screenshot SHA-256 at capture. - Keep runner crash probes in controlled recovery tests. Preserve the original failure when cleanup also fails. - Display missing accounting and replay revisions as unavailable. Align harness security assertions with the approved CI changes. - Make the channel-rejection browser fixture bind its file after the send captures its payload. This prevents live refresh from removing the file before the simulated race. ## Verification - Full workspace `pnpm -r typecheck` passed after merging current master. - Runner E2E typecheck passed. Harness unit tests passed: 216/216. - Wake-queue database tests passed: 55/55. The two added existing-incident tests failed before the fix and pass after it. - Docker artifact calibration passed: 12/12. Host-file and host-loopback isolation tests failed before the fix and pass after it. Read-only delivery and output limits are also verified. - Full `pnpm build` passed. Targeted recovery tests passed: 83/83. - The channel-rejection browser test passed five consecutive runs after fixing the fixture race found in CI. - Local general-server (12,351 tests), UI (6,250), CLI (485), and workspace package groups passed. The monolithic run stopped at an unchanged lock-heartbeat fixture race; the isolated workspace group passed on rerun (shared: 747/747). A separate local serialized run passed 97 files before two socket errors in the unchanged issue-list route suite; that suite passed 15/15 on isolated rerun. These local full commands did not finish uninterrupted; the complete CI matrix below covers the remaining suites. - Final head `0fb293733fe307be7e6667ae8f1364077d0c6455`: 34 successful checks, 2 expected skips, including every server/workspace shard, browser shard, native runner verification, build, and typecheck. [Final CI run](https://github.com/paperclipai/paperclip/actions/runs/34989136700). - Greptile reviewed this exact head at 5/5; all review threads are resolved. Both Superagent security checks are successful. - ACPX credential-boundary tests passed: 118/118. Superagent accepted the runner/sidecar versus provider-environment trace and cleared its finding. - The latest paid local campaign on source `f6a2fdf7ac2af859826a2ae627ff4125a5478529` passed 22/24 cases: Sol 8/8, Claude 7/8, Mini 7/8. These results predate the merge with current master. - The two remaining failures are in `hire-reuse`: Claude exceeded the attempt deadline during final review; Mini made invalid deliverable tool calls and remained Blocked. - Six Daytona cases were not run because the matching immutable runner image was unavailable. This PR does not claim new remote model results. ## Risks The changes affect connection admission, helper identity, and recovery scheduling. Assigned gateway grants and user approval still govern service calls. The workspace admission gate still exists; the broader folder-sync design is separate work. Provider behavior can still cause the two recorded hiring failures. No database migration is required. Paid cases are opt-in and have bounded attempt deadlines. Project stories now require Docker and the documented pinned Python image on the harness host. ## Model Used OpenAI `gpt-6-astra` performed implementation, diagnosis, and substantive review. OpenAI `gpt-5.6-luna` assisted with verification, PR preparation, and review tracking. Both used repository tools and code execution. Context-window sizes were not recorded. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused checks and isolated reruns; full-run limitations are documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: OpenAI GPT-5.6 Luna <noreply@openai.com> Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-15 11:04:16 -05:00
Devin Foley	46bcc0863c	test(runner): stop two CI-contention flakes that starve the canary lane (#13418 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Each master commit is published as an npm canary, and the nightly release gate installs the newest canary and runs the onboarding smoke against it > - A canary only publishes after the Cloud readiness workflow passes for that exact commit > - Cloud readiness fails often, and almost every failure stops that commit from ever becoming a canary > - The nightly gate then keeps testing an old canary, so a fix that landed after it cannot reach the gate, and the gate stays red for reasons no longer in the code > - Most of these failures are short timeouts that only expire because the runner is loaded > - This pull request gives two such timeouts the budget the surrounding tests already use > - The benefit is that more master commits publish a canary, so the nightly gate tests current code ## Linked Issues or Issue Description No existing issue. The problem, in the bug report format: What happened Cloud readiness failed on 25 of 85 runs over three days (29%). 24 of those failures stopped the commit from publishing a canary. Two timeout clusters account for 10 of the 25: - `packages/paperclip-runner/src/control-plane/durable-prp-control-plane.test.ts` — `Error: Test timed out in 5000ms.` in "promptly fails the real transport request and notification paths on authenticated bad semantic input". Seen in runs 34652752663, 34654215468, 34656885170, 34657111560, 34661910120. - `packages/paperclip-runner/src/live/live-session.test.ts` — `Turn settled before the intentional SIGKILL: Error: Capability Codex turn timed out after 2000ms`. Seen in runs 34632264036, 34658026290, 34658106386, 34727991195, 34760283177. Expected behavior A commit that is good publishes its canary. A test fails because the behavior is wrong, not because the runner was busy. Steps to reproduce 1. Run the Cloud readiness workflow on master repeatedly. 2. Watch the Runner protocol and chaos jobs. 3. The two tests above fail intermittently, and the commit then publishes no canary. Paperclip version or commit Present on master. Measured over runs from 2026-09-11 to 2026-09-14, which is the workflow's whole history. ## What Changed - `durable-prp-control-plane.test.ts`: the "promptly fails the real transport request..." `it.each` now takes the same 15s budget as the test directly above it. It ran on the 5s default, although it builds a real control plane over a socket. The neighbouring test already asks for 15s, so this reads as an omission. - `live-session.test.ts`: the real-runner SIGKILL test gives the turn a 60s timeout instead of 2s. The test kills the runner process and then asserts the turn was still running at that moment, so the timeout is only a backstop. At 2s a loaded machine settles the turn first and the assertion fails. Neither change weakens an assertion. No test in this PR asserts that a timeout happens, and the tests that do assert one (`turnTimeoutMs: 500` and `turnTimeoutMs: 20`) are untouched. ## Verification ``` cd packages/paperclip-runner npx vitest run src/control-plane/durable-prp-control-plane.test.ts # 87 passed npx vitest run src/control-plane/durable-prp-control-plane.test.ts \ -t "promptly fails the real transport" # 2 passed (both it.each cases) ``` The live-session change is verified by the readiness lane itself, because that suite needs a real runner and a provider. ## Risks Low risk, and limited to test budgets. - A genuine hang in either test now takes longer to report: 15s instead of 5s, and 60s instead of 2s. - A real regression still fails, because the assertions are unchanged. - Timeouts are not a complete fix for this lane. Port races (`EADDRINUSE`), lease races, and lost runner VMs cause about another 40% of its failures. A retry on the `verify` matrix would cover all of those classes, and none of them reproduce on a second attempt. That is a larger policy change, so it is not in this PR. ## Model Used - Claude Fable 5 (`claude-fable-5`), 1M context, extended thinking, run through Claude Code with tool use and code execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [ ] I have updated relevant documentation to reflect my changes — no documented behavior changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green — pending first run - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — pending first review - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-14 09:34:15 -07:00
DottaandPaperclip	78ce96a48b	fix(runner): restore native Claude context and read permissions (#13422 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner supplies each agent with instructions, assigned skills, and tools. > - Native Claude lost its skill snapshot before provider launch. It also changed exact model IDs to aliases. > - The read permission mode denied ordinary Paperclip reads because this runner has no interactive approval handler. > - This pull request restores the missing context and permits only assigned tools that Paperclip defines as reads. > - Other requests that need approval stop with a clear action for the operator. They do not retry automatically. > - Agents can complete read tasks. Users can see why a restricted task stopped. ## Linked Issues or Issue Description What happened? Native Claude could not find assigned skills. The ACP layer could replace an exact model ID with an alias and then fail identity verification. The default `approve-reads` mode denied Paperclip read tools. A denied write showed a generic transport failure. The tool descriptions also called live operations “mock” operations. The completion prompt said to call a completion tool once, although the protocol can reject a claim and require a corrected call. Expected behavior Load assigned skills before launch. Keep the selected model ID. Allow assigned Paperclip reads. Stop an operation that needs approval with clear instructions when no approval handler exists. Steps to reproduce 1. Configure a native Paperclip Runner agent with ACPX Claude and an exact model ID. 2. Assign a skill and ask the agent to use it. 3. Select the read permission mode and ask the agent to read task context and list documents. 4. Ask the agent to write a document. Check the task state and recovery message. Paperclip version or commit Reproduced from `d351e08deee1b49d3467a950d1a3f01131943441`. Deployment mode Local native runner with real Claude, Rust runnerd, the Paperclip server, and embedded PostgreSQL. Related: #13196 fixed remote skill staging in the legacy `claude_local` adapter. The native runner uses a separate path, which this pull request fixes. ## What Changed - Carry the runtime context through Rust and the ACPX sidecar. Load assigned Claude skills after the provider lifetime lease is held. Refresh the files on each open. - Write the exact requested model ID into the isolated Claude settings. - Grant exact MCP permissions for the intersection of assigned tools and Paperclip's read catalog. Provider hints cannot grant access. Existing task-control permissions stay in place. - Stop requests that need an unavailable approval handler. Preserve the typed error through the server. Show “Approval required” on the task and require operator action without automatic retry. - Label the setting “Allow Paperclip reads.” Remove “mock” from live tool descriptions and regenerate the contracts. - Change one completion-prompt sentence to require one accepted result. Add regression tests and update the runner documentation. ## Verification - Red/green regression tests cover read admission, unavailable approval handling, server recovery, and the task error message. - A real Claude read trial failed before the fix and completed after it: [red trace](https://www.braintrust.dev/app/Paperclip/object?object_type=project_logs&object_id=fda74078-b00d-495a-90d3-ea1be019d71b&id=95e6a326e24437f1), [green trace](https://www.braintrust.dev/app/Paperclip/object?object_type=project_logs&object_id=fda74078-b00d-495a-90d3-ea1be019d71b&id=85a1f347db5604d1). - Full browser tests used real Claude and the production tool authority. Reads completed. A write stopped with “Approval required.” No document was created and no automatic retry was scheduled. All nine checks passed: [events and screenshots](https://www.braintrust.dev/app/Paperclip/object?object_type=project_logs&object_id=fda74078-b00d-495a-90d3-ea1be019d71b&id=1c4ff10be0d779cc). - A separate full browser test assigned a skill, invoked it, and completed with a marker absent from the task prompt: [skill evidence](https://www.braintrust.dev/app/Paperclip/object?object_type=project_logs&object_id=fda74078-b00d-495a-90d3-ea1be019d71b&id=ba5fbcb29a60be52). - Post-rebase checks passed: 128 targeted runner tests, 46 Rust tests, 27 sidecar/protocol contract tests, `pnpm -r typecheck`, and `pnpm build`. The server/UI red-green checks and `pnpm check:token-gates` also passed. The full suite passed in CI, including all general and serialized test shards, all three browser shards, and runner `check:all`. The duplicate unsharded local full-suite run was stopped after CI passed. Braintrust links require project access. The traces contain provider/runner events and app outcomes. They do not contain raw model HTTP requests. ## Risks - `approve-reads` now allows assigned Paperclip reads. Other operations that need approval stop the turn. Users must review the operation and change permissions before retrying. - The Claude settings depend on the pinned ACP and SDK behavior. Automated tests and real Claude trials cover this boundary. - The native Codex path is unchanged. The ACPX Codex fallback shares the clearer approval failure handling. - Local execution was tested end to end. Remote execution was not run. This change has no database migration. ## Model Used OpenAI GPT-6 through Codex. The agent used reasoning, code execution, and browser tools. The exact deployment ID and context-window size were not exposed in the session. Live acceptance tests used `claude-sonnet-5`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-14 10:56:24 -05:00
DottaandPaperclip	f2c5e54dca	fix(runner): preserve handoff work and publish requested files (#13355 ) ## Thinking Path > - Paperclip lets people manage AI agents and their tasks. > - A task keeps its instructions, progress, and files when its assigned agent changes. > - The replacement runner lost the interrupted run's context and could overwrite an existing draft. > - A saved message also stayed attached to the former agent and could reopen the task after the replacement finished. > - File tasks could report Done with only a local path that the user could not open. > - This pull request transfers handoff context and saved messages, and makes requested files accessible through the existing attachment contract. > - Users can change agents and collect completed work without repeating instructions or confirming bookkeeping. ## Linked Issues or Issue Description Refs #13338. Builds on merged #13354 for queue admission and #13353 for remote workspace retry. #10123 concerns restricted recovery-model escalation; this change instead covers ordinary native handoff and file completion. What happened? Codex wrote a draft before a user assigned the task to Claude. The replacement lacked continuation context and replaced the draft. A queued user message could later restart the former agent and reopen the completed task. Separately, a runner could finish a requested file but return only a machine-local path. Remote native runs had no bound file publication tool. Expected behavior The replacement reads and preserves existing work, receives saved messages once, and keeps each message's author. The former agent stays stopped. A requested file has a working attachment or accessible work product before Done. Text-only tasks do not require attachments. Steps to reproduce 1. Ask Codex to save three newsletter names and then wait. 2. Queue an instruction to keep those names and expand the draft. 3. Use Interrupt and assign to select Claude. 4. Verify the original names survive, the result has a working download, and only the source and replacement runs exist. 5. Ask either provider for a Markdown checklist and open the file from its completed response. ## What Changed - Carry the exact same-task interrupted run's summary, semantic receipts, and history into handoff context. Tell the replacement to inspect existing files before editing. - Adopt saved ordinary task comments into the successor's receipt under the task lock. Preserve authors and separate mention, chat, and interaction contracts. - Prevent a former-assignee comment wake from reopening a completed task or starting a stale execution. - Reject workspace-only, fabricated, and cross-task file completion references with actionable runner feedback. New file output also needs a matching current-run publication receipt and asset filename/size/hash, or an accessible work product registered by the current run. Prior output can remain context alongside a current file, or be verified and re-registered internally. Authorized chat attachment reuse retains its verified current-run clone receipt; older receipt shapes require an intact matching source. - Bind remote file reads to the active environment runner and reuse the existing attachment and work-product publication path. - Enforce workspace confinement, regular single-link files, stable identity, a 10 MiB limit, and exact size and SHA-256 checks. Rotate the native session fingerprint for the updated tool contract. - Contain rejected remote signals and protocol-failure cleanup, including logging failures. Preserve the original cleanup rejection for its owner; a rejected operation never supplies stop acknowledgement or cleanup proof. - Allow exactly one maximum-size base64 file through the native SSH command adapter, preserving a finite output cap. - Document handoff and accessible file completion rules. ## Verification - Each observed bug has a failing regression before its fix. Final post-rebase integration passed 732 tests across 13 files before the final receipt and signal guards; final affected results are below. - Publication provenance and compatibility: 8 provenance regressions and 2 compatibility regressions failed before their fixes; the final four affected suites pass 53 tests, including mixed old/new references and real authorized chat reuse. Controls cover old attachments and work products, filename/size/hash/origin mismatch, missing/wrong receipts, current-run publication, same-run durable proof, internally re-registering preserved bytes, and no-new-file follow-ups. - Remote signal rejection: the real Node subprocess previously exited 1 when the production launcher signalled a deleted sandbox. It now stays alive for both a failed signal and failed logging; all 349 executor tests pass. The failed signal still provides no termination proof. - Remote file reader and SSH command boundary: 33 tests passed, including real Linux descriptor reads and the actual SSH adapter subprocess output cap (network executable replaced by a deterministic fixture). Exact 10 MiB bytes pass, one byte beyond the encoded cap fails. - Live local Claude and Codex Stop journeys preserve the saved file, deliver queued instructions once, and reach Done with two total runs. The handoff journey preserves the original names and download with exactly two runs. Both local providers deliver exact checklist files without a completion confirmation. - Live combined Daytona verification passed: the original failed task's Retry reused its sandbox; a selected Git subfolder produced an exact downloadable file; warm and deliberately resumed Claude runs took about 33 seconds. Codex produced a 240-byte download in 33.1 seconds after 134 seconds of contention/backoff. Both cloud downloads retained exact bytes after the two owned sandboxes were deleted. - The sandbox-deletion retest identified a separate ignored promise in protocol-failure cleanup. Two real Node subprocess regressions failed under fatal unhandled-rejection policy before the fix; all 36 protocol, lifecycle, and integrity tests now pass. The original close promise still rejects to its owning runtime. The final live retest passed: a normal Claude Daytona task completed in 132.352 seconds, then its sandbox was deleted. Thirteen samples over 361 seconds confirmed the same controller stayed healthy, the task stayed Done with unchanged run IDs, and its attachment retained exact bytes. The post-deletion browser download passed with zero page errors; all five owned sandboxes are confirmed absent. - Full repository typecheck and build passed on final commit `de64d16f1`. Final-head Greptile is 5/5 with no unresolved threads. [Final-head CI](https://github.com/paperclipai/paperclip/actions/runs/34736623758) passed: 32 successful checks and two conditional skips. The earlier mixed-source full local test invocation was deliberately stopped before rebase, so no pristine green full local aggregate is claimed. Its known failures passed in later affected suites. ## Risks - Handoff may adopt only ordinary comments from its validated former owner. Other delivery contracts must remain independent. - File verification fails closed if a remote file changes during reading. The runner must retry publication or explain a blocker. - The updated session fingerprint starts a fresh provider process where needed to install the new tool contract. - No schema migration or historical status reconciliation is included. ## Model Used OpenAI `gpt-6-astra` through Codex, with reasoning, code execution, browser testing, and tool use. The context-window size is not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-13 08:41:20 -05:00
DottaandPaperclip	c9e3bb7ca4	fix: preserve queued work after native Stop and honor steering support (#13354 ) ## Thinking Path > - Paperclip lets people manage AI agents and their tasks. > - The runner owns execution, while the task keeps user instructions and status. > - Stop must stop the current response without losing instructions that the user already sent. > - The queue stored its original reason inside saved context. Recovery checked the outer deferred reason and left the message waiting. > - Claude also exposed Steer through a shared method even though its driver did not support it. A rejected request could remove its own error row. > - This pull request keeps queued work until execution has stopped, uses the driver's real capability, and preserves completion event order. > - Users can continue work without repairing task state or repeating messages. ## Linked Issues or Issue Description Refs #13338. Related recovery work: #13353. What happened? A message sent during a native run stayed queued after Stop. Claude exposed an unsupported Steer action. A steering failure could hide the queued row and its error. A terminal event could also precede the final provider result, and subtree Stop omitted the board actor. Expected behavior Stop ends the current execution. Once Paperclip proves that execution has stopped, it delivers the saved instruction once through normal admission. Pause and recovery holds still prevent dispatch. Unsupported controls stay disabled, and a rejected action leaves an actionable error visible. Final results precede terminal events. Steps to reproduce 1. Start a Claude or Codex task that writes a file and then waits. 2. Send a follow-up instruction while it runs. 3. Press Stop. Check that the queued instruction runs once and preserves the file. 4. Check Claude's Steer control and simulate a server rejection on the only queued message. ## What Changed - Recover saved native comments after acknowledged Stop using their original wake reason. - Require durable remote termination receipts or verified local process termination before dispatch. - Preserve actor identity, queued-message deduplication, Pause, and recovery gates. - Derive steering support from the driver descriptor and reject unsupported calls. - Keep the queue mounted until a steering request succeeds so its error remains visible. - Emit provider results before terminal events and pass the board actor into subtree Stop. - Document Stop and steering behavior. ## Verification - Final-head continuation suite: 104 passed, after failing regressions for saved wake reasons, cleanup proof, and deduplication of every queued message. Steering UI: 121 passed. Driver capability: 26 passed. Runner backend/transport: 205 passed; Rust library: 285 passed. - Real Claude and Codex browser journeys both preserved the saved file, delivered the queued instruction once after Stop, and reached Done with exactly two total runs. The process Stop browser fixture also passed. - Local full repository typecheck and build passed on `afaa35139`; server typecheck and the affected 104-test suite passed after the final queue changes. Token gates passed. Final-head CI verifies the complete integrated source. - Local aggregate evidence has explicit limits: the general-server invocation overlapped the queue fixes and finished with 11,989 passed, 2 failed, and 80 skipped; both failures are covered by the final 104-test pass. The UI and CLI then passed all 6,184 and 485 tests; the complete 145-file serialized rerun passed all 2470 tests. The shared-package lock fixture passed unchanged on rerun, but the package phase subsequently stopped at an embedded-Postgres bootstrap resource failure. No single pristine green local full aggregate is claimed. - Greptile reviewed `fa66e2bd5` at [5/5 with no unresolved findings](https://github.com/paperclipai/paperclip/pull/13354#issuecomment-5650334242). [Final-head CI completed successfully](https://github.com/paperclipai/paperclip/actions/runs/34733781888/attempts/2): 33 successful checks, 2 conditional skips, including all server, package, UI, browser, runner, typecheck, and build gates. The first attempt hit a preview-readiness/port-collision fixture; its unchanged local control passed 25 tests with 3 skips, and one supported unchanged CI retry passed the affected shard and aggregate gates. ## Risks - Queue recovery must never overlap an old execution. Unknown cleanup state remains blocked. - Driver descriptors are now authoritative for steering; a wrong descriptor disables the action instead of attempting it. - No schema migration or historical status reconciliation is included. ## Model Used OpenAI GPT-6 through Codex, with reasoning, code execution, browser testing, and tool use. The exact hosted model ID and context-window size are not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 22:29:54 -05:00
DottaandPaperclip	422287eecd	fix: preserve runner recovery, warm sessions, and task outcomes (#13338 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner connects task messages, provider execution, and task outcomes. > - First-time user tests exposed gaps in recovery, completion permissions, message delivery, and Stop behavior. > - These gaps left usable output hidden, completed work waiting for bookkeeping, or safe work unable to continue. > - This pull request fixes the shared lifecycle and receipt paths while preserving process ownership and action checks. > - Users can continue work with accurate task state and durable messages. ## Linked Issues or Issue Description What happened? A stopped local Codex execution could remain blocked even after its processes had stopped and its complete transcript proved that no external action needed replay. Claude under Conservative permissions could fail to call task completion tools. Recovery could reuse an assistant item ID and overwrite prior output. A delivered comment could remain marked uncertain after navigation. Stop could look like Pause or a new recovery incident. Workspace contention could look like cancellation. A direct reply reopening Done could enter a clarification loop. Expected behavior Recover automatically only with verified termination and complete action receipts. Preserve answers and messages. Keep task completion available under Conservative permissions without broad tool access. Show crashes as Blocked, actual human decisions as In Review, and ordinary workspace contention as waiting. Stop the current response and allow a new direction. Steps to reproduce 1. Create ordinary response tasks with local Codex and Claude Code, then send follow-up messages through the task composer. 2. Interrupt a disposable local Codex runner during text-only work. Verify automatic continuation and retained output. 3. Stop a response, send a new request, answer a clarification, and reopen completed work with another message. 4. Navigate or reload while a comment submission is pending. Confirm the exact persisted request receipt settles it without removing newer draft text. 5. Run two tasks in a shared Daytona workspace. Confirm waiting does not appear as failure. Paperclip version or commit Initial acceptance baseline: `c9021c6721f91e2c74bd9fee9d3fd41c999d17b7`. Current integration base: `6cef9743c`. Both operator-interruption and workspace-waiting guards are preserved; native restart and legacy permission rules remain documented. Deployment mode An isolated source-built test-drive instance, with real local Codex and Claude Code providers and disposable Daytona environments. Related work: #13314, #13316, #13327, #13344, #13239, #13254, #13163. This PR addresses additional failures from ordinary task journeys, including controller restart handoff and repeated warm sandbox setup. Historical task status reconciliation is excluded. ## What Changed - Persist runner ownership immediately at spawn and resume an explicitly adopted runner even when the controller crashed before the first driver checkpoint. Detach the controller safely across graceful restarts, including session startup. Prevent an old finalizer from suspending or signaling an adopted runner. Checkpoint idle warm sessions before shutdown. Preserve the same run and queued follow-up messages. - Scope saved legacy queue successor checks to the queue owner while preserving ordinary task locks, operator identity, assignment gates, and exactly-once delivery. - Preserve managed Codex credential files when an old session is detached for restart; normal owned cleanup still copies refreshed auth back and removes the scoped copy. - Reuse the bound warm shared sandbox and fully verify an existing staged provider pack before using it. This avoids repeated uploads when the pack is already valid. - Add a narrow local Codex replacement path with stopped-process proof, a closed transcript inventory, exact completion receipts, and fresh-session lineage. Preserve no-replay holds when evidence is incomplete. Recovery may clear only the same run's recorded Blocked status version; manual re-blocking and dependency changes invalidate that receipt, while queued comments do not. Later blocks stop scheduled, queued, and final dispatch; queued/final checks re-read dependencies even when the task status stays In Progress. - Permit only task delivery and human-input tools through the isolated Claude runner's exact task bridge. - Scope assistant item identity to the provider turn and ignore only authority-free Codex skill-change notifications during startup. - Reconcile composer submissions by client request ID across response loss, navigation, and reload. Retain text typed during delivery. - Keep acknowledged run-only Stop neutral and show workspace contention as waiting. Project exhausted native failures as Blocked. - Restore the guarded task-page retry action for failed legacy runs, including the server-supported explicit new-attempt path for stopped conversation adapters. Preserve native/process recovery holds and avoid promising Retry while a decision or execution gate hides it. - Refresh delivered artifacts and handle direct user replies that reopen completed work without a clarification loop. - Check the embedded PostgreSQL PID, data directory, and actual port before connecting or migrating. - Document accepted behavior and add focused regressions at lifecycle, route, transcript, and UI boundaries. ## Verification - Final head `fece606ac2` passes the complete GitHub CI matrix: 34 green checks, two expected Storybook skips, no failures or pending checks, including `ci / verify`, `ci / e2e`, full runner verification, typecheck, build, every server/workspace shard, and all browser shards. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34727183287). Greptile is 5/5 with no open findings. The final two commits only refine test fixtures; both affected suites pass 24/24 locally and in CI, with server typecheck green. - Complete local Vitest coverage uses the canonical groups/shards: all 635 general server suites, all 145 serialized suites, and all workspace packages. The aggregate began on `0a8001c18` while the final queue fix arrived: 23,903 passed, five failed, 87 skipped. The five port/socket/timing failures passed unchanged in follow-ups (60 tests in the exposure/file suites and 412 tests covering the serialized failures and unrun tails). The final queue/operator-identity suites separately passed 52/52. This is aggregate coverage plus explicit reruns, not a pristine single-command final-head run. - After integration with current master, queue/operator-identity/continuation suites passed 162/162 and affected UI suites passed 140/140. ACP Stop/continuation and legacy task/Inbox/message browser suites passed 9/9, including both task recovery Retry and thread Try again, automatic saved-message delivery, exactly one new run, Done, and retained output after reload. The default process Stop/Pause/Resume browser case passed (the native-provider case is opt-in and skipped by default). The complete Board attachment/receipt browser suite passed 11/11 on a disposable instance, covering both composers, exact receipts after lost responses, no replay, bound attachments, and newer drafts after reload. - Blocking-intent regressions cover pre-existing Blocked, a mismatched run/cause, an explicit manual re-block, changed dependencies, a queued comment after failure, and a block arriving between scheduling and provider dispatch. The negative cases reproduced before the fix. All 478 affected executor/recovery/dispatch tests passed; both database suites ran separately after availability-probe skips in the first combined command. The final late-dependency check passed all 143 affected recovery/dispatch tests (zero skips) after two new negative cases reproduced the bug. - Focused runtime regressions cover awaited runner ownership publication, authenticated adoption before the first checkpoint, old-finalizer detachment, idle and busy warm-session shutdown, rejected checkpoint propagation, provider-pack verification, and managed-Codex credential preservation. Four managed credential detachment cases reproduced the bug before the fix; normal owned cleanup still succeeds exactly once. - Live local Claude: SIGKILL 2.6 seconds into startup recovered the same run automatically in 53 seconds, then a normal follow-up completed in 24 seconds. SIGTERM 2.5 seconds into startup preserved the same run (54 seconds) and its queued follow-up (21 seconds). Answers remained visible and the task reached Done. - Live Claude Daytona: a warm follow-up retained its sandbox and fell from 121 seconds to 44 seconds. A separate cold turn took 127 seconds; after controller shutdown and checkpointing, its follow-up completed in 33 seconds with the same sandbox, workspace, native session, and runner. Both answers remained visible and the task was Done. - Other live journeys covered task completion and follow-up with local and Daytona Codex, local Codex crash recovery, Stop then new direction, clarification response, live artifact refresh, and shared-workspace waiting. - Validation limits: the opt-in native composer Stop/Pause→subtree Resume fixture exposes terminal/result ordering and subtree-cancellation attribution bugs that can leave a child task blocked; that new finding is assigned to a separate follow-up and is not claimed fixed here. Default CI skips this optional native-provider fixture. Managed-Codex credential handoff and the queue-agent integration use automated regression evidence. Cold custom provider-pack uploads still add startup latency. ## Risks - Automatic replacement remains deliberately narrow: local Codex, verified stopped identities, unchanged retained state, and a complete text/completion-only turn. Unknown actions, partial history, or changed ownership remain blocked. - Claude completion permission handling changes an upstream package patch. The exact isolated task bridge must remain pinned; unrelated tools keep their existing permissions. - New task failure projection changes user-visible status. No historical status backfill or database migration is included. - This is a broad lifecycle fix across server and UI. Live proof covers graceful local Claude restart during startup and idle Claude Daytona session recovery across controller shutdown. Live abrupt SIGKILL during local Claude startup also recovered the same run. Unknown ownership or missing action evidence still blocks reuse. Cold custom provider-pack uploads still add startup latency; this change avoids unnecessary repeat uploads. ## Model Used OpenAI GPT-6 (Codex), with reasoning, code execution, browser automation, and tool use. The exact hosted model ID and context window are not exposed in this task. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 19:41:15 -05:00
DottaandPaperclip	df984cbc2c	fix: dispatch queued legacy messages with operator identity and task permissions (#13315 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Task conversations save messages that arrive during an active turn. > - Legacy adapters deliver these messages in a later turn. > - A run can stop before the saved queue is delivered. > - The Interrupt button previously required an active run, so it could not release this queue. > - This pull request lets a board operator send the saved queue after the run stops and retries queues missed during finalization. > - Manual dispatch must use the clicking operator and must not require permission to create agents. > - The task can continue without a duplicate message or a second execution owner. ## Linked Issues or Issue Description What happened? A legacy task retained a queued message after its run stopped. Interrupt was disabled because the queue had no active target. Finalization and deferred message admission can also leave a queue without a successor. Expected behavior Interrupt sends the saved messages when no runner is active. Messages that arrive during normal completion are delivered automatically. An uncertain previous execution still requires proof that its process or sandbox stopped. Steps to reproduce 1. Queue a user message during a legacy conversation turn. 2. Let the turn stop or simulate a server restart before queue promotion. 3. Open the task with a deferred queue and no active run. 4. Try Interrupt. Before this change, the button is disabled. Paperclip version or commit Reproduced against `8f40b4ad4`. Deployment mode Legacy conversation adapter. The same persisted queue state is covered with an isolated PostgreSQL fixture. Related public work: #13275 adds active legacy interruption. #13291 addresses automatic sandbox conversation recovery. This change handles explicit saved-queue delivery and late queue promotion. ## What Changed - Accept a null Interrupt target while retaining queue identity, revision, company, and assignee checks. - Save the operator's request on the existing queue. Reuse normal admission after verified stop, including older messages, different authors, and queues whose original wake came from the system. - Strip interruption authority from caller-supplied wake payloads. Only the board queue route can persist that authority. - Retry durable interruption requests after restart and deferred queues after legacy cleanup. - Let an explicit Interrupt retry cleanup for its stopped run, including old ephemeral leases that recorded success without a provider stop receipt. Preserve retained resources, other lease owners, and the automatic retry limit. - Preserve the server's waiting explanation when normalizing and combining queue entries. - Revalidate the consumed board queue receipt at dispatch so a different message author does not cause setup failure. - Use the Interrupt user's execution identity for the new run. Preserve original message authors. Validate the receipt independently at startup and inherit the resulting identity on retry. - Persist authenticated board authority for ordinary manual wakes too. Adopting someone else's queued messages cannot switch a manual run to that author's permissions. Strip caller-supplied authority markers and retain private conversation ownership checks. - Keep the clicking user when a manual wake is merged into an older deferred receipt. Update its requester and payload in the same transaction. - Use the same current-queue/revision API on task details and pipeline conversations; show Interrupt after a legacy target stops. - Keep manual wakes out of active runs, including unscoped agent wakes. They receive their own execution identity; a matching receipt requester is not sufficient because an exact retry can retain a different originating identity. - Authorize both existing-agent wake endpoints with `agent:wake`, available to active non-viewer company members. Keep `agents:create` for hiring. Validate the stored task and current assignee before an exact task retry. - Reject viewer Interrupt requests before saving intent or stopping execution. Keep external chat retry authorization and per-action agent/user permission checks. - Preserve edits and discards until dispatch. Prevent another queue promotion when the same agent already has a successor. Keep independent reviewer recovery available. - Suppress cancelled/failed run toasts for intentional operator interruption. Keep ordinary runtime error notices. - Add UI, route, admission, restart, successor ownership, and toast regression tests. Document the behavior. - Reuse the existing socket reservation helper for both credential-quorum test cases after CI exposed an ambient-port collision. This changes test preparation only; production credential staging is still called exactly once. ## Verification - Failing regression tests reproduced the message-author identity bug and an operator's `agents:create` rejection before the fixes. - All 316 focused tests pass across eight route, queue, identity, authorization, continuation, and responsible-user suites, including the 44-test rerun of queue admission and actual startup after the final manual-wake restriction. Regressions reproduce cross-user merging both with and without a task, and same-requester receipt ambiguity. The cross-company existence guard also passes both tests. - Startup integration tests reach adapter execution under the clicking operator and retain that identity through follow-up. Coverage includes mixed authors, adopted queues, system-origin queues, restarts, forged or stale receipts, viewers, suspended memberships, changed assignees, private conversations, and caller-supplied authority markers. - The earlier queue/cleanup/UI regression suite passed 402 tests. The final review corrections pass another 180 tests across queue admission/persistence, real heartbeat startup, UI API, conversation rendering, and pipeline suites. Regression tests reproduced both review findings before correction. The final head has a 5/5 review with no unresolved threads. Full CI passes on `c2002979c`, including every general and serialized server shard, all browser shards, Paperclip Runner verification, typecheck, build, canary dry run, and the aggregate gates. - Full `pnpm -r typecheck`, `pnpm build`, and UI token gates pass after the final application changes. CI identified an outdated task-page API mock after the shared helper extraction; the fixture now exercises the real helper, and all 131 task-page/API tests pass. The final application build passes with the additional manual-wake restriction. - CI exposed a pre-existing port collision in the Codex credential-quorum fixture. It reproduced locally; both listener cases now use the existing bounded reservation helper. All 41 credential tests pass on rerun. One intervening local run hit a separate ambient bind collision in the two-occupied-port case. - The full local `pnpm test:run` attempt was stopped after host contention caused focused-suite timeouts. The affected focused tests passed on rerun. An expiring trace fixture and a missing private-conversation state were corrected. The successful full CI run is the complete-suite verification. - Hosted Interrupt previously cleared the original queue and produced exactly one successor with neutral interruption feedback. It exposed the dispatch authorization defect. Retry on that earlier build was rejected for missing `agents:create` before creating another run. - Deployed the final application build (`38257f391`) to the scoped hosted instance and verified readiness. The latest PR commit changes only the credential test fixture; application code matches that deployment. A live Retry by the same operator without `agents:create` created one successor attributed to that operator, passing the former dispatch permission gate. Startup then stopped at `configuration_incomplete` because that operator has not configured their required personal Claude Code OAuth secret; the post-deployment run page confirms the operator identity and no provider work started, and the My secrets UI still shows the token as not set. Provider execution remains unverified pending that credential. No permission grants or credentials were changed. ## Risks Queue admission and finalization can race. The task lock, durable queue receipt, current comment IDs, and successor guard prevent duplicate dispatch. Process and lease stop checks, task pauses, approvals, ownership, and budgets remain in force. The API change only allows null on legacy Interrupt; native steering still requires an active run. No schema migration is required. Active non-viewer board members can now invoke existing agents without agent-creation permission. Agent self-invocation rules, raw provider-trace admin access, task retry scope, external chat authorization, and action-specific user/agent permissions remain enforced. ## Model Used OpenAI GPT-6 through Codex. The session does not expose an exact backend model ID or context-window size. Used reasoning, repository search, code execution, tests, and browser tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 17:11:30 -05:00
DottaandPaperclip	47ded8bf97	feat: manage AI runtime credentials through Connections (#13247 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent runs need credentials for a specific provider and sign-in method. > - Connections already owns accounts, grants, and access permissions. > - AI authentication should use those same boundaries. > - This pull request adds the storage, API, adoption, and runtime foundation. > - Legacy agents keep their authentication until they explicitly adopt a managed connection. ## Linked Issues or Issue Description Problem or motivation AI credentials are configured separately from Connections. Agents cannot consistently reuse a responsible user's account or a permitted shared account. Proposed solution Manage AI accounts with the existing Connections grants and permissions. Keep model and harness selection independent from credential selection. Preserve legacy authentication until validated adoption. Alternatives considered A separate credential registry would duplicate ownership and access policy. Automatic fallback would risk using the wrong account. Roadmap alignment This extends the shipped Apps, multi-user, secrets, and agent-runtime capabilities. The maintainer requested the feature and reviewed the UI. Related groundwork: #11899 (connection permissions), #10910 (connection wizard), #11692 (Claude subscription profiles), and #11854 (Codex account rotation). ## What Changed - Add AI-purpose/runtime-auth contracts and an additive, idempotent migration. - Add Claude, OpenAI, OpenRouter, and Grok provider capabilities and catalog entries. - Store credentials on grants. Resolve responsible-user defaults or explicit permitted grants. - Isolate managed credentials and provider sessions across accounts. Block missing credentials without ambient fallback. - Keep imported legacy secrets unchanged during reconnect. Use independent local Codex/Grok sign-in attempts for rotating credentials. - Add authorization, migration, concurrent refresh, retry, cancellation, and legacy-compatibility tests. This is part 1 of a two-PR stack. The app UI follows in #13248. Merge the foundation first. ## Verification - Updated against master `04e364236`, preserving upstream provider login and connector workflows. - Full workspace typecheck, production build, Storybook build, and token gates passed on the integrated branch. Final local-login changes passed 59 focused tests; new-agent and inbox regression suites passed 63 tests. - Browser checks verified automatic local Claude account detection, resumable Codex login commands, retry, focus restoration, and desktop/phone layouts. Commands create their isolated directory before invoking the CLI. - All current-head CI checks passed on `2a996560a`, including all server/workspace tests, browser shards, runner verification, typecheck, build, and canary dry run. Greptile reviewed that commit at 5/5 with no unresolved threads. Earlier local full-suite attempts hit the Mac PostgreSQL shared-memory limit; the complete suites passed in CI. - Renumbered the additive AI migration to `0276` after upstream migrations and regenerated its snapshot. Existing legacy agents retain their configuration. - Added local login status checks, owner-scoped retry, managed OpenCode remote homes, credential-aware model discovery, and task connection-repair delivery. ## Risks - Managed credential failures intentionally block execution. They do not restore legacy fallback. - Preview-era copied Codex/Grok subscriptions require independent reconnect. - The integrated branch has live provider acceptance coverage. This update verifies local Claude detection and Codex API-key task repair; it does not add a new subscription authorization/refresh or Daytona stress pass. - Runtime-auth connections must stay excluded from tool and channel handling. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, code execution, and browser testing. The exact runtime model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 16:30:10 -05:00
DottaandPaperclip	c9021c6721	fix: require explicit native completion reviews (#13314 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runs report their outcome through paperclip_finish. > - The server previously turned incomplete reports into human approval requests. > - Those requests could block a later successful run, even when no person had requested review. > - This pull request creates review cards only for explicit attention requests and withdraws proven old fallback cards. > - Agents receive useful completion feedback, while explicit approval gates and task state protections remain in force. ## Linked Issues or Issue Description Related: #13266 removed reviews caused by policy upgrades. This change removes the separate completion fallback. What happened? An agent reported needs_review while waiting for checks without requesting a human decision. Paperclip created a generic Native completion review. A later successful report could not complete the task because that old card remained pending. Expected behavior Ordinary low-risk work completes after a valid done report, a successful run, and workspace finalization. Incomplete work stays with the agent. Explicit approval requests remain visible and must be resolved. Steps to reproduce 1. Complete a native run with needs_review and no attention requests. 2. Continue the task and submit a successful done report. 3. Observe that the old implementation leaves the task in review behind a generic confirmation card. ## What Changed - Require explicit attention requests to create native review cards. Route each request independently and preserve pending or declined decisions. - Withdraw only pending system cards with matching old decision, assessment, effect, contract, and prompt provenance. Preserve history and explicit or answered requests. - Reassess an affected current result without overwriting later task edits, runs, contracts, or workspace failures. - Return pending approval links and required actions through the completion tool. Reject contradictory done reports and empty review requests before accepting a result. - Allow one corrective continuation for incomplete results, then expose a recovery action. - Update status fixtures, database regressions, runner tests, and the completion contract documentation. ## Verification - `pnpm -r typecheck` passed after merging current master. - `pnpm build` passed after merging current master. - The combined branch passed 89 completion and Agent Chat tests. Other targeted tests passed: 170 external-chat and reconciliation tests; 50 runner-resume and control-plane tests; 13 arbiter tests; 7 chat delivery tests; 21 runner completion and runtime-context tests. - The full local test attempt exposed old review fixtures and a missing fake-provider binary. The fixtures are fixed and the helper is built. All affected suites pass in fresh reruns. The timing-sensitive Discord test also passed on rerun. - All latest-head CI checks passed, including build, typecheck, general and serialized tests, runner verification, browser tests, and canary dry run. Greptile is 5/5 with zero unresolved comments. ## Risks - Cleanup changes existing pending cards. It requires exact system provenance and only applies to low-risk agent-claim contracts. It does not delete history or dismiss explicit requests. - Status still commits after the turn and workspace finalization. Completion feedback reports current constraints and does not claim an early status commit. - Incomplete reports now request a bounded corrective run instead of an automatic approval. Repeated failures expose recovery. ## Model Used OpenAI Codex, GPT-6, with repository inspection, code execution, and test tools. The exact deployment identifier and context window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 13:00:04 -05:00
DottaandPaperclip	7e6d512597	fix(onboarding): make chief-of-staff hiring reliable (#13317 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The first agent helps the board define work and hire other agents. > - That agent can have the general role while its instructions require hiring skills. > - Missing skills and blocked schema discovery make valid requests fail. > - Repeated confirmation and invalid waiting guidance can turn these failures into extra runs. > - This PR supplies the required skills, opens read-only schema discovery, and corrects the guidance. > - The agent can complete an authorized hire while company approval and duplicate checks still apply. ## Linked Issues or Issue Description Refs #13068 — the first-task onboarding flow that this change repairs. Refs #12029 — related drift between the sandbox allowlist and bundled hiring guidance. This PR adds schema access; it does not replace the earlier hiring-route fix. What happened? A general-role onboarding chief received hiring instructions without the core hiring skills. Sandbox requests to the documented OpenAPI endpoint failed. The agent then guessed question and hire payloads. The persona required new confirmation after validation errors and described waiting states that agents cannot set. Expected behavior A direct request authorizes the requested hire. The chief asks only for material missing details, uses valid API payloads, and completes the task. Formal company approval gates still apply. A saved human-input card gives the task a valid waiting state. Steps to reproduce 1. Create an onboarding chief with role `general` through the board. 2. Ask it to hire a friendly robot with a supplied name and responsibilities. 3. Check its assigned skills, schema requests, question cards, hire requests, and final task state. Paperclip version or commit Reproduced on the first-task onboarding implementation after #13068. The live local verification used this branch at `112f44610`. Deployment mode The original failure used a hosted sandbox with legacy Codex ACP. Live verification used an isolated local instance and real `codex_local` execution. Queue and HTTP/2 transport access is covered by automated tests. ## What Changed - Give board-created onboarding chiefs the existing core skills regardless of role. Preserve explicit skill version pins, including aliases. Keep ordinary general-agent defaults and authorization checks. - Allow exactly `GET /api/openapi.json` through both sandbox bridge transports. - Publish validator-tested question, free-text, hire, and waiting examples. Regenerate the runner API reference and capability inventory. - Clarify direct authorization, material ambiguity, and correction of confirmed pre-creation validation failures. Preserve uncertain-outcome reconciliation, duplicate protection, and company approval gates. - Align disposition instructions with agent permissions and the saved human-input waiting path. ## Verification - After rebasing onto current `master`: 69 targeted server tests, 110 queue/HTTP2 bridge tests, and 4 capability inventory tests passed. These cover core skill defaults, version pins, actor restrictions, schema access, published examples, hire validation, idempotency, and approval gates. Waiting recovery tests and live question flows also passed before the rebase. - `pnpm -r typecheck` and `pnpm build` passed again after the rebase. Frozen dependency installation and both generated capability checks passed. - Ran the full `pnpm test:run` suite. The initial run had 14 failed server files due to local database resource limits, a missing built test fixture, and socket failures. All 14 files passed after fixture repair and isolated retries. UI, CLI, workspace packages, database tests, and all 145 serialized server files passed. - Real one-request hiring replay: one hire, one successful run, task done in 2m16s. No repeated approval or recovery escalation. - Real two-turn browser conversation: start with an unspecified hire, then supply a name and friendly robot responsibilities. One clarification card, one hire, two successful runs, task done in 3m27s of execution. No failed writes, confirmation cards, or recovery actions. - Assigned the hired robot a welcome-message task through the browser. It produced a warm message under 100 words and finished in one successful 66-second run, with no questions or recovery actions. - The two-turn flow still asked an optional preferences question and gave a technical final reply. These are remaining presentation limits. - Greptile: 5/5 on `b71f83ba2`, with zero unresolved review threads. Fixed its generator finding and passed 1,655 published-example/runtime API tests plus server typecheck. All latest-head CI checks are green (32 passed; 2 unrelated Storybook checks skipped). The signoff-policy browser test initially timed out while waiting for an approver run. Its shard passed on one rerun without code changes. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34698211049). ## Risks - Onboarding chiefs receive more default skills. Ordinary general agents retain existing defaults, and explicit versions take precedence. - Prompt guidance can affect model behavior. The live replays are examples, not a guarantee that every model follows the guidance. - Retry guidance applies only when validation confirms that nothing was created. Uncertain outcomes still require checking existing agents. - No database migration or new public endpoint. Existing company boundaries, approval gates, and bounded recovery remain in force. ## Model Used OpenAI Codex, model `gpt-6-astra`, with reasoning, tool use, code editing, and live browser verification. The exact context-window size is not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 12:59:42 -05:00
DottaandPaperclip	ab15aff390	feat: add experimental persistent agent chat (#13284 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Conversations must use the same tasks, controls, and execution history. > - Users need an ongoing chat with an agent without managing task properties. > - Agents should clarify and plan work, then hand execution to assigned project tasks. > - This pull request combines the reviewed Agent Chat stack for one squash merge. > - The benefit is persistent conversation with normal task governance and shared UI. ## Linked Issues or Issue Description Subsystem affected Task lifecycle, agent runtime tools, shared task UI, and browser/paid runner tests. Problem or motivation Users need one persistent conversation with each agent. A separate chat store or renderer would duplicate task behavior and bypass existing controls. Proposed solution Use a task-backed chat per company, user, and agent. Reuse the task composer and transcript. Clarify and plan in chat, then create assigned project tasks with the relevant plan. Keep Agent Chat behind its own disabled-by-default experimental setting. Roadmap alignment This implements the task-backed direction in [CEO Chat](https://github.com/paperclipai/paperclip/blob/master/ROADMAP.md#-ceo-chat). Related proposals: #2504 and #9693. Related request: #7981. The maintainer requested one squash merge of the complete stack. Consolidates the reviewed runtime [#13281](https://github.com/paperclipai/paperclip/pull/13281), backend [#13282](https://github.com/paperclipai/paperclip/pull/13282), and UI [#13283](https://github.com/paperclipai/paperclip/pull/13283) layers with this PR's E2E coverage. All four layers passed CI and received Greptile 5/5 before consolidation. This PR targets master and includes the complete feature. ## What Changed - Add personal canonical chat tasks with ordinary company visibility, immutable identity, idempotent first sends, and an idle waiting state. - Process `/new` in queue order. Preserve history, release a chat pause, and fence old provider context and delayed writes. - Keep chat lifecycle rules across recovery, finalization, assignment, task lists, and rollups. - Support research and plan revision in chat. Hand plans to ordinary assigned project tasks before execution starts. Reject new chat subtasks. - Add repository-aware project creation and discovery tools, including multiple repository IDs and GitHub URLs, authorization, idempotency, and durable project-created cards. - Reuse task UI components for chat, with starred/recent agent navigation and a separate `enableAgentChat` experimental flag. - Add deterministic browser tests and 24 paid chat cells across four Codex/Claude profiles, with validated reports and screenshots. - Integrate current master recovery, controller lease, queued-message, and task UI changes. Gate chat interruption and deferred promotion on ownership/feature policy. Guarantee lease renewal and active controls are stopped even if teardown fails. - Preserve master's migration 0273 and generate chat migration 0274 with idempotent replay for development databases. ## Verification - Prior exact heads of all four PRs passed Linux CI, including build, typecheck, general/serialized tests, and browser E2E. Each had Greptile 5/5 and no unresolved findings. - Integrated local verification passed: full repository typecheck and production build, Storybook build, token gates, 340 focused UI tests, all 20 deterministic chat browser tests, two migration replay tests, 88 focused chat/queue/native/controller tests, and provider/session regressions including real lease expiry. These include the three lifecycle regressions for the final admission/teardown fixes; server typecheck also passes. Current head `1268eda16cc2af892055917e7292f068820be135` has Greptile 5/5 with no unresolved findings and passing security scans. All final-head CI gates passed: build, full Runner verification, typecheck/release registry, canary, all general/serialized test shards, and all browser E2E shards ([CI run](https://github.com/paperclipai/paperclip/actions/runs/34696739927)). Local PostgreSQL startup contention required serialized retries; skipped fixtures do not count as passing coverage. - The earlier paid campaign passed all 24 chat cells and retained 32 screenshots: [report](https://d1p6rlowie26tp.cloudfront.net/runner-e2e/campaigns/gha-34648511170-1/index.html?report=agent-chat#suite-agent-chat). It tested `abacbdfd2f660709ec37312cdb758284c8399d04`; it is prior evidence, not a paid run of this integrated head. - Manual check: enable Agent Chat in Experimental settings, open an agent, clarify and revise a plan, then hand off to an assigned project task. Stop a reply, send `/new`, and verify fresh context with retained history. Disable the setting and verify agent shortcuts/new chat turns are blocked. ## Risks - Queue/session integration can affect retries and delayed writes. Tests cover ownership, cancellation, reset boundaries, idle recovery, and ordinary task behavior. - Migration 0274 adds conversation fields and constraints. Replay is idempotent and preserves existing development chat history. - This combines the previously reviewed stack at the maintainer's request. Agent Chat remains off by default and is separate from Conference Room. ## Model Used OpenAI Codex, GPT-6 Astra (`gpt-6-astra`), with reasoning, code execution, browser tools, and parallel review. The exact context-window size is not exposed in this session. Codex and Claude also ran as test subjects in the linked paid campaign. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-12 08:56:04 -05:00
Devin FoleyandPaperclip	5cc7784986	test: remove cold executable reads from runner integrity deadlines (#13301 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native runner protocol tests verify that invalid authenticated input fails closed. > - Cloud readiness requires those tests to pass before a source commit can deploy. > - Two test fixtures hash the host Node executable twice even though its process launcher is synthetic. > - Cold reads of a large Linux executable consume time unrelated to protocol failure handling. > - This PR gives both synthetic runner fixtures tiny real artifacts and keeps their existing deadlines. > - Real authentication, encrypted frames, and request and notification failures remain covered. ## Linked Issues or Issue Description What happened? Cloud readiness repeatedly failed in `DurablePrpControlPlane > promptly fails the real transport request and notification paths on authenticated bad semantic input (throwing observer: false)` with `Test timed out in 5000ms`. The image built, but the failed source check prevented deployment. See runs [34656885170](https://github.com/paperclipai/paperclip/actions/runs/34656885170) and [34657111560](https://github.com/paperclipai/paperclip/actions/runs/34657111560). The first case took 5.6–11.4 seconds; the following case took about 0.4 seconds. The original test reads and hashes `process.execPath` once itself and once through the real transport. The Node executable is 122,678,944 bytes in the local Linux Node 24 container, versus 68,672 bytes on the development Mac. Instrumented Mac runs pass; cold executable reads are a likely cause of the CI-only timeout. Expected behavior The deadline should measure real protocol rejection and consumer failure, without reading a large unrelated executable as test fixture data. Steps to reproduce 1. Run the named test with the real transport and synthetic process launcher. 2. For a deterministic probe, inject a six-second delay into the first `readFileSync(process.execPath)` call. 3. The original test exceeds its existing five-second deadline. Both cases pass after this change because neither reads the host executable. The probe is temporary instrumentation, not part of this commit. Paperclip version or commit f12b647ae; the same failure also occurred on `a38ccf997` and `9031516a7`. Deployment mode Cloud readiness in GitHub Actions on Linux AWS runners. No duplicate open PR found after searching runner timeout and durable PRP changes. ## What Changed - Write a 26-byte synthetic runner artifact inside each existing temporary test directory. - Bind both the real authority and test client to that artifact's actual SHA-256 digest. - Retain synthetic process launchers, real wire exchange, all observer and composed-runtime cases, integrity assertions, cleanup, and existing five- and fifteen-second timeouts. ## Verification - Passed all 107 tests across `src/control-plane/durable-prp-control-plane.test.ts` and `src/drivers/codex/codex-protocol-integrity.test.ts` using the package Vitest configuration. - With a temporary six-second host-executable read delay, the original case times out. Both fixed cases pass in 235 ms combined under the same fault injection. - Passed `git diff --check`. - Full workspace typecheck and build passed. The full local test command stopped after the general server group: 10,694 tests passed and 15 failed. Thirteen failures involve macOS directory rename permissions in the skill-cache suites. Two failures involve a missing local AgentMail skill path. Later groups did not run in that local invocation. The targeted runner tests passed; all Linux CI test groups passed. - [Current-head CI run 34661107658](https://github.com/paperclipai/paperclip/actions/runs/34661107658) passed. All 32 checks are green or intentionally skipped at `e7053594e647fd8e9b71fc569cab6b7a3e9cd210`. Native runner verification passed in 15m25s. Greptile is 5/5 on that head, with no unresolved review findings. ## Risks Low risk: this changes test fixture data only. The launcher never executes the file. Artifact hashing and authentication still use real bytes. Protocol behavior and existing test deadlines do not change. The current Linux CI run passed both fixtures and the full native runner verification. Further post-merge runs will test repeatability. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, and code execution. The exact serving model ID and context window are not exposed by this environment. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted runner tests; full local suite limitations are listed above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 17:39:57 -07:00
DottaandPaperclip	250deab910	fix(runner): keep healthy native sessions alive (#13261 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Native sessions keep a provider process and its work alive across control-plane operations. > - A hidden 15-minute turn deadline stopped work even when the agent timeout was zero. > - A one-hour runner lifetime and fixed connection lease added two more limits. > - Recovery also rejected goal commands because it reconstructed their startup summary with the wrong protocol version. > - This pull request removes implicit duration limits and renews authenticated leases in the harness. > - Healthy sessions can continue without model action or a user interface change. ## Linked Issues or Issue Description Refs #13092 and #12845. Related: #13163 covers sandbox recovery after app restarts; this change covers session duration and lease renewal. What happened? A native Codex session stopped after 15 minutes while a tool was still running. The agent had `timeoutSec: 0`. Recovery then rejected a `session.goal.get` startup command with `invalid provider startup ownership fence`. Expected behavior An unlimited session keeps working while its provider and authenticated controller remain healthy. Lease maintenance is transparent. Explicit timeouts, cancellation and revoked authority still take effect. Steps to reproduce Start a native session with `timeoutSec: 0` and run a tool beyond 15 minutes. Before this fix, the runtime cancels the turn. A recovery startup that uses a goal command also exposes the protocol-version mismatch. ## What Changed - Honor the agent turn timeout. Zero disables the timer. Long explicit durations use timer chunks to avoid Node timer overflow. - Default native runner lifetime to unlimited. Keep bounded startup, reconnect and control-operation deadlines. - Renew leases over the authenticated connection. Persist renewal before the reply. Validate identity, epoch and expiry. Handle duplicate requests and a lost reply on reconnect. - Freeze renewal during warm ownership transitions and terminal handling. - Validate persisted goal startup commands with protocol v2. - Add duration, renewal, ownership, recovery and real-process regression tests. Update runner protocol and recovery docs. - Add no UI components or controls. Renewal requires no model output or user action. ## Verification Current head: `348e369c35c5da8bb8be378f4b35dcf6f40882e7`. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34649767113). - All 32 checks pass on this head. The two Storybook checks are skipped as expected. CI includes full build, typecheck, runner verification, browser suites, server tests and the canary package dry run. - Greptile reports 5/5 on this head. All review threads are resolved, and the security scan passes. - Passed `pnpm -r typecheck` and `pnpm build` locally. - Passed 219 native-runtime and controller tests, including fake-clock tests for three weeks of renewal and 30-day explicit timeouts. Six denial tests confirm that renewal cannot extend expired, revoked or mismatched authority. - Passed 337 executor, cancellation and restart-recovery tests, plus 278 Rust runner-core library tests. - Passed a real runner with a silent fake Codex provider across its original lease expiry. Runner PID, provider PID, thread and active turn stayed unchanged. Warm-attach recovery tests also pass. - Passed all 83 plugin-worker tests and 159 of 161 workspace-runtime tests locally. The two remaining assertions passed with a canonical macOS temporary directory, as did the changed runtime fixture. The full affected server shard passes in CI. - An unchanged GitHub callback-ordering test failed once in CI, passed locally in isolation, and passed its one test-shard retry. The final CI summary is successful. - The full local `pnpm test:run` sweep was interrupted after dependency setup failures and load-related timeouts. Identified failing suites passed in isolated reruns after the dependency repair. The complete test matrix passed remotely in CI. ## Risks - Deploy the controller and runner together to enable renewal. Older peers keep their existing bounded lease behavior. - Unlimited runtime permits long resource use until completion, explicit cancellation, configured timeout or loss of valid authority. - Lease renewal changes authenticated protocol handling. Regression tests cover stale, revoked and mismatched authority, lost replies and warm handoff behavior. - Simulated multi-week tests and a real lease-boundary test do not constitute a weeks-long production soak. ## Model Used OpenAI GPT-6 through Codex, with repository inspection, code execution and TypeScript/Rust test tools. The exact backend revision and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 17:09:43 -05:00
DottaandPaperclip	a12bbd1824	fix: stop completion reviews caused by policy upgrades (#13266 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runtime records completion assessments and task decisions. > - An application update can change the assessment policy version. > - The previous code treated that version change as a reason for human review. > - An upgrade alone does not give the user a new decision to make. > - This change keeps existing decisions and withdraws obsolete upgrade review cards. ## Linked Issues or Issue Description What happened? A rules version change moved unfinished tasks into review and created a card that said, "Review the superseding native policy assessment." The task did not need new work or a human decision. Expected behavior New runs use the current rules. An upgrade leaves existing task decisions alone. The saved policy version remains available in the audit history. Steps to reproduce 1. Save a native run assessment and a task decision. 2. Change the native status policy version. 3. Run finalization reconciliation without new task evidence. 4. The previous code created a review card. The corrected code keeps the saved assessment and decision. Related context: #13038 changed the native policy version. Searches found no duplicate fix for upgrade-only completion reviews. ## What Changed - Remove policy-version mismatch as a reconciliation trigger. - Withdraw pending cards only when their source decision, effect ledger, creator, key, and prompt match the old upgrade-only review. - Restore the previous status only while that decision and status version remain current and no other review gate is pending. - Preserve answered cards, real review requests, later task changes, and historical assessments and decisions. - Record cleanup activity and retire any corresponding chat review actions. - Isolate cleanup failures so one old card cannot block other cleanup or normal finalization. - Update the status conformance fixture, regression tests, and architecture documentation. ## Verification - Passed: `pnpm exec vitest run server/src/__tests__/native-status-arbiter-corpus.test.ts` (23 tests, including the 53-fixture status corpus). - Passed: `pnpm -r typecheck`. - Passed: `git diff --check`. - Passed: `pnpm build`. - Passed: fresh Greptile review at 5/5 on `d24e5ecaf`, with no open review threads. - Passed: the 23 focused tests in the isolated full-suite environment. - Local `pnpm test:run`: the server group finished with 10,638 passed and one missing-fixture failure. Built the required `fake-codex-app-server` fixture and reran the entire affected native session-resume suite: 37/37 passed. The initial full command exited on that server-group failure, so remaining groups are covered by CI. - Passed: the workspace-runtime-exposure suite (25 tests, 3 platform skips). - Passed: all CI gates, including every test shard, browser tests, typecheck, and build. The server shard passed on one retry after an unrelated host-port conflict in the unchanged workspace-exposure tests. - Cleanup tests cover repeat runs, real reviews, answered cards, later statuses, newer decision identity, status changes back to review, other pending requests, run scope, cleanup failures, retry, and live publication failures. ## Risks - Cleanup changes stored task state. It checks the exact obsolete decision and status version under database locks before restoring status. - Pending approvals, interactions, and execution stages prevent restoration out of review. - The cleanup handles at most 100 matching cards per reconciliation pass. It does not rewrite old decisions or accept an agent's completion claim. - New evidence and explicit task changes still use the existing reconciliation paths. This change does not reevaluate old work merely because Paperclip was updated. ## Model Used OpenAI Codex, GPT-6. The exact deployment identifier and context window are not exposed in this session. Used reasoning, repository inspection, code editing, shell execution, and automated tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 16:55:46 -05:00
DottaandPaperclip	663c44cb2b	fix: continue conversations after confirmed remote runner stop (#13254 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Users can stop a run and send another message on the same task. > - Remote runners need evidence from their sandbox provider that execution stopped. > - Local process checks cannot prove that a remote process exited. > - This pull request records provider stop receipts and uses them for conversation admission. > - New user messages can proceed after confirmed cleanup without repeating interrupted actions. ## Linked Issues or Issue Description Refs #13237 and #13239. Related: #13163 covers app-restart recovery; this change covers an explicit stop followed by a new user message. What happened? A stopped remote Claude ACP task kept its execution hold after Daytona cleanup succeeded. Native runners also rejected remote process identities and retained stale session cleanup gates. A message sent during cleanup could stay deferred after the sandbox stopped. Expected behavior After the provider confirms that the old execution stopped, a new user message starts a fresh turn. Pending user messages must not need another message to trigger admission. Prior action outcomes remain recorded. Steps to reproduce 1. Start a long-running task in Daytona with a legacy Claude ACP or native ACP runner. 2. Cancel the run while its tool is active. 3. Send a new message immediately, or after cleanup completes. 4. Observe the execution hold despite the old sandbox having stopped. Paperclip version or commit Reproduced on master at `7b829efdf6`. The branch is rebased on current master. ## What Changed - Add optional provider stop receipts to sandbox release and destroy hooks. Old plugins remain compatible. - Bind receipts to the company, run, lease, and provider resource. Failed cleanup cannot supply stop authority. - Acknowledge legacy remote cancellation after confirmed termination. - Admit native user continuations using remote receipts instead of host process checks. - Retire only the settled cleanup owner matching the stopped company, run, and provider resource. Isolate cleanup gates between remote sandboxes, including two sandboxes owned by one run. - Reconsider user messages deferred during remote cleanup through normal admission, including successful later cleanup retries. - Preserve receipts through cleanup retries and inline cleanup after failed startup. - Permit provider destruction after a terminal remote checkpoint failure. Busy ownership still blocks destruction. - Add regression tests and update execution semantics. - Give the real preview fixture ten seconds for cold startup. Reuse release-mode Rust artifacts for the filtered parity checks, avoiding a duplicate debug test build that exhausted CI disk twice; test filters and assertions are unchanged. ## Verification - Recursive typecheck and build passed. - Targeted server, Daytona plugin, and native runtime tests passed. They cover missing or mismatched receipts, failed cleanup, local process protection, exact cleanup ownership, and a message sent during cleanup. - Live Daytona tests passed for legacy Claude ACP, native per-turn, native warm, and a newly created native runner using disposable sandboxes. Each original run was cancelled; its explicit follow-up completed with no execution hold. The disposable case confirmed a new sandbox after deletion. - Native tests used the provider's Opus 5 selector, `opus[1m]`, and the Linux runner bundle from the sandbox image. Existing checkpoint/sync finalization warnings remained visible before the native follow-ups reached committed success. This change does not repair those separate warnings or guarantee recovery of uncheckpointed files. - A direct live provider test also passed with the final delete-wait change: the destroy hook returned its receipt only after Daytona reported the sandbox destroyed. The final Daytona plugin suite passed all 153 tests; its build passed. - After rebasing on master, 284 targeted server/plugin tests and 313 native executor tests passed. The native session runtime suite passed all 128 tests. - The review regression passed all 145 tests across the continuation, environment runtime, and pending-cleanup sweep suites. Recursive typecheck and build passed again after that fix. - The security review's exact-resource finding is fixed. Cleanup completion requires the same provider-resource scope used during session creation. All 128 native runtime tests, 61 server continuation/cleanup tests, recursive typecheck, and build passed after this fix. The two-sandboxes-in-one-run regression proves one receipt cannot retire the other quarantine. - Greptile reviewed the final commit at 5/5, the security scan passed, and no review threads remain unresolved. The final native executor suite also passed all 313 tests. - The full local suite reached 10,616 passing tests before stopping on four failures. All four now pass in focused reruns: the final-code continuation/teardown suites, the attachment suite, and the native session test after building its required fake-provider binary. The original full run overlapped source edits and did not reach the remaining groups; it is not counted as a full-suite pass. - The preview exposure suite passed all 25 applicable tests (three Linux-only tests skipped locally) after the startup allowance change. Both release-mode Rust parity commands passed locally. All final-head PR checks passed, including full server/workspace/browser test groups, full native runner verification, build, typecheck, canary dry-run, and the aggregate gates. ## Risks - A provider must return a receipt only after confirmed termination. Incorrect provider claims could permit overlapping execution. - Older providers without receipts retain the existing hold. Missing evidence, failed cleanup, active ownership, pauses, approvals, and budgets still block admission. - This change preserves unknown action outcomes and old checkpoints. It does not authorize replay or alter historical runs. - No database migration or telemetry contract change is required. ## Model Used OpenAI GPT-6 through Codex, with repository inspection, code execution, and browser tools. The exact backend revision and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub references) - [x] My branch name describes the change and contains no internal Paperclip ticket id or instance-derived details - [x] I have run targeted tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 15:18:37 -05:00
DottaandPaperclip	b1efd65edc	fix: continue interrupted task conversations with bounded retries (#13237 ) ## Thinking Path > - Paperclip manages AI agents and their tasks. > - A task can outlive a provider process or a server restart. > - Legacy recovery treated unknown tool outcomes as a permanent execution hold. > - That hold could also reject a later user message. > - A conversation turn can use prior history without replaying prior tool calls. > - This pull request lets supported conversation adapters continue within the existing retry budget. > - Users can send a new message after automatic attempts stop. ## Linked Issues or Issue Description What happened? A server restart could interrupt a local ACP run and leave its task behind a permanent recovery hold. A later user message could be cancelled before the provider answered. The immediate recovery path could also create a successor outside the durable failure counter. Expected behavior Continue with a bounded new conversation turn. Preserve a compatible provider session or use full task context when it is unavailable. Do not replay recorded tools. When automatic attempts stop, allow a new user request through the normal execution gates. Steps to reproduce 1. Start a task with a local conversation adapter. 2. Restart the server while the provider is working. 3. Let the previous run become interrupted. 4. Send a follow-up message and observe the recovery hold on the old behavior. Related work: Refs #13075 for durable task recovery. Refs #12946 for retry-limit and checkout-lock handling. This change routes conversation recovery through the existing bounded scheduler. ## What Changed - Mark supported local conversation failures for continuation. Keep native-runner and non-conversation recovery rules. - Carry an interruption notice into the next turn. Retain stopped ACP session history even when a write outcome is unknown. - Clear unavailable ACP sessions so the next bounded attempt can use full task context. - Route immediate failure recovery through the same durable scheduler as process-loss recovery. Release only the predecessor checkout when its retry takes ownership. - Retire obsolete conversation holds using immutable run evidence, in bounded batches with an activity record. Preserve outcome evidence and do not wake historical tasks. - Block actual admission and Resume while a predecessor process or environment lease is still active. Keep the original interruption notice after a rejected wake. Preserve the upstream blocked-wake waiting contract: bounded retry planning can happen during cleanup, while deferred messages and execution remain gated. - Add subprocess and database regression tests. Update the execution contract. - Add the current thread-status field to the native recovery provider fixture so its damaged-journal test reaches the intended boundary. Tolerate an already-exited fixture process during test cleanup while still asserting both processes terminate. ## Verification - Workspace typecheck passed: `pnpm -r typecheck`. - Build passed: `pnpm build`. - Module boundaries passed: `pnpm check:module-boundaries`. - Focused tests passed: 293 recovery/session/dispatch tests, 66 retry and response-gate tests, and 37 native-session tests. Some suites overlap. - Tests cover interrupted writes, missing sessions, concurrent retries, restart persistence, pending questions and approvals, execution gates, and historical holds. - Built the Rust test executables with `pnpm --filter @paperclipai/paperclip-runner build:rust` for native-runner verification. - Full Vitest coverage verified locally using the repository’s general and serialized shards, with focused reruns for failures and files not reached after a shard stopped. The ownership-gate regression is fixed and the complete affected server shard passes (1,390 tests). Local parallel runs also hit temporary-directory, resource, and timing failures; those suites pass with canonical temporary paths and sequential reruns. No test timeouts were increased. - Final merged-branch regression run: 577 tests pass across process recovery, retry scheduling, liveness, durable chat, wake-queue application/adapter, dispatch, continuation, native sessions, and task chat. Earlier focused verification also passed 19 native control tests. Token gates and whitespace validation pass. - Browser verification passed all three ACP Stop/continue/pause scenarios, including a rerun after merging the upstream waiting behavior: `PAPERCLIP_E2E_PORT=3397 pnpm test:e2e tests/e2e/acp-stop-continuation.spec.ts`. The interrupted-write case verifies that follow-up completes without a repeated write. - Final-head [CI run 34625037394](https://github.com/paperclipai/paperclip/actions/runs/34625037394) passed on `06ac4bd9d150f8b209a96e5fd609c696958794a0`: all 31 reported checks are green, including server/workspace suites, all browser shards, native runner verification, build, typecheck, release dry run, and aggregate gates. The two conditional Storybook checks were skipped. Greptile reviewed this exact commit at 5/5; all review threads are resolved. ## Risks - A new model turn can choose to repeat an action. Paperclip does not replay recorded tool calls and does not certify unknown action outcomes. - Conversation adapters now stop after their retry budget instead of requiring action reconciliation. Explicit Stop, pause, dependency, approval, budget, and ownership gates remain in force. - No schema migration or dependency changes. Historical holds are folded without changing task status or waking work. ## Model Used OpenAI GPT-6 through Codex, with reasoning, repository tools, code execution, and test execution. The session does not expose a more specific model build ID or context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 12:16:04 -05:00
DottaandPaperclip	1616046c24	fix(runner): prevent trace scans from delaying live events (#13228 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner sends events that keep task state and steering controls current. > - Debug trace correlation reread and parsed the full trace for each pending event. > - Repeated scans blocked event delivery and left task state minutes behind the provider. > - This pull request indexes appended trace records once and reuses those correlations. > - Operators get current run state while native trace evidence remains available. ## Linked Issues or Issue Description What happened? Native runs appeared live after their provider turn ended. Steering was unavailable while the board still showed an active run. A CPU profile attributed 93% of sampled time to trace lookup and file reads. Expected behavior Debug trace correlation must not delay run events or task state by minutes. Steps to reproduce 1. Enable native provider trace capture for a Codex run. 2. Produce a long event stream with pending correlations. 3. Compare provider event times with persisted run event times. Paperclip version Reproduced on source build `6dd48cad43`. Deployment mode Self-hosted server with the native Codex runner. Related event-delivery work: Refs #12208. This fix addresses synchronous trace lookup rather than disconnect draining. Searches found no duplicate trace-index fix. ## What Changed - Add a transport-owned incremental index for native trace frame correlations. - Read at most 1 MiB per lookup and retry incomplete prefixes and partial records. - Preserve latest-frame and terminal-status ordering. Invalidate replaced or truncated traces. - Clear each index on transport close. Keep active indexes independent. - Skip correlation records over 64 KiB without buffering or parsing their full contents. Preserve the original trace file. - Add regression tests for repeated misses, appended records, partial UTF-8, large traces, replacement, and cleanup. - Document the trace lookup performance constraint. ## Verification - Latest revision: 11 index regressions and the existing real-runner trace correlation test pass (12 tests). - Includes 24 interleaved active traces, oversized records across appends, and incomplete later interpretations. - `pnpm build` and `pnpm -r typecheck` pass on final head `ddc74e42c`. - The real-process hard-restart regression passes after rebuilding its fake-provider binary from the rebased sources. - The full local test command reports a pre-existing assertion mismatch in `native-session-resume.test.ts`: the damaged-epoch recovery case expects the old attach error instead of the new startup-history error. The same exact failure was reproduced in an isolated checkout of unchanged base `a20ecce40`. The PR does not change that test or startup behavior. - A recorded-trace benchmark reduced 120 lookups from 2.20 seconds to 22 milliseconds. - The deployed hotfix removed the scan hotspot. The final main-thread profile was 94% idle. A guarded restart reported no lost runs. - All GitHub checks pass on `ddc74e42c`, including build, typecheck, general tests, serialized server tests, end-to-end tests, canary dry run, and security checks. Greptile is 5/5 on that exact head with no open threads. - Two timeout cases from the long local run pass in isolation: exhausted quota-monitor evidence and native-question expiry. The duplicate full local run was stopped after the complete CI suite passed. ## Risks Each active transport retains event-to-frame mappings in memory and clears them on close. Records over 64 KiB do not enter the correlation index; the original trace file retains them. Large traces can need multiple pending retries before a correlation is available. These records are diagnostic; this change does not alter execution authority, event acknowledgements, or provider commands. ## Model Used OpenAI Codex, GPT-6. The runtime does not expose a more specific model ID or context-window size. Used reasoning, code editing, shell execution, CPU profiling, and tests. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused tests; the full-suite baseline failure is documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 09:57:34 -05:00
DottaandPaperclip	a05b828bcd	Reduce run polling and workspace inspection amplification (#13174 ) ## Thinking Path > - Paperclip manages agent work and shows run progress to operators. > - Run lists, live events, transcripts, and workspace details must remain responsive as usage grows. > - Run-list redaction rereads the full context for every run. Hidden tabs can still trigger requests through live events and manual timers. > - Workspace detail reads repeat Git inspection even when concurrent callers request the same state. > - This pull request batches registry reads, pauses hidden-tab refreshes, and caches Git inspection for display. > - Cleanup keeps fresh Git checks, and redaction keeps company and run boundaries. ## Linked Issues What happened? Run-list responses perform one extra database read per run and parse full context JSON to obtain small secret registries. Hidden tabs continue transcript reads and event-triggered refetches. Workspace detail requests repeat Git scans. Expected behavior A run list reads registries once. Hidden tabs stop recurring run reads and reconcile when visible. Concurrent workspace detail reads share a short-lived Git result. Steps to reproduce 1. Open run lists and task transcripts in several tabs while agents run. 2. Hide some tabs and observe transcript and event-triggered requests. 3. Request a 200-run list and count redaction database queries. 4. Request the same workspace detail concurrently and count Git inspections. Related: #5255 adjusts polling cadence. This change addresses hidden-tab lifecycle, batched registry reads, and workspace inspection reuse. No duplicate with this scope was found. ## What Changed - Batch heartbeat and live-run redaction into one company-scoped registry query. Select only registry JSON for run and issue redaction. - Resolve duplicate secret values once per request. Preserve each run's registry and remove registry material from responses. - Suspend company event sockets and transcript reads while hidden. Refresh active queries and resume transcript offsets on return. - Prevent queued event invalidations and developer health polling from fetching in hidden tabs. Gate legacy run-log readers in both UI variants. - Exclude legacy plugin placeholder connections from remote health probes. Select only due connection IDs in SQL before the sweep limit. Preserve existing plugin records. - Cache concurrent Git display inspections for five seconds, with at most 256 entries. Leave close-readiness and cleanup checks uncached. - Add regression coverage and document the performance behavior. - Stabilize the existing Rust descendant-lineage fixture: allow a bounded 30 seconds for 300 durable notifications under concurrent test load, retaining every correctness assertion and adding timeout diagnostics. ## Verification - Regression coverage verifies one registry query for 200 runs, per-run isolation, request-local secret resolution, decryption failures, Git cache expiry/bounds, hidden-tab pause, and visibility recovery. - Real PostgreSQL redaction/run-route suites passed all 57 tests; workspace-service coverage passed. The health-sweep regression verifies plugin placeholders and chat connections remain untouched and do not consume the sweep limit. - Both legacy transcript viewers retain history and resume their byte offset after visibility changes. The related visibility/progress/chunk suites passed all 29 tests. Other focused UI suites and token gates passed. - Full `pnpm -r typecheck` and `pnpm build` passed. Affected-package typechecks/builds passed after review fixes. The concurrent Rust provider suite passed 84 tests (two ignored), and Rust formatting passed. - Full local `pnpm test:run` stopped after the general-server group: 10,538 passed, 65 skipped, four failed. Fresh chat-delivery and health-sweep reruns passed; building the debug runner fixture cleared the native-event test. One unchanged native-session recovery assertion still fails locally with a semantic-digest error instead of the expected settled-session message. The full local command is therefore not green. CI runs the later groups separately and skips the two native-session tests requiring a prebuilt runner binary (confirmed in its 37-test native-session suite). - All CI gates pass on final head `ee610e737`: typechecking, general and serialized tests, browser tests, runner verification, build, and canary dry run. One server shard passed on its single retry after exposure fixtures encountered port 42001 where they assumed 42000; that suite also passed locally (25 passed, three platform-specific skips). - Greptile reviewed the final head at 5/5 with no actionable findings. ## Risks - Workspace delivery display can lag local Git changes by five seconds. Destructive operations still inspect current state. - Hidden tabs do not receive company live-event notifications until visible. Active queries refresh on return. - This change preserves legacy plugin records and does not repair instance-specific workspace rows. There is no database migration. ## Model Used OpenAI Codex, GPT-6 family, with reasoning, repository tools, code execution, and browser inspection. The exact model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (targeted regressions; full-suite limitation documented above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-11 08:34:24 -05:00
Nicky LeachandClaude Sonnet 5	c1b55537ba	fix(paperclip-runner): bump claude-agent-acp pin to 0.73.0 (#13162 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - The Claude local adapter can run agent turns through an ACP (Agent Client Protocol) server, `claude-agent-acp`, instead of the plain CLI > - Two separate packages each pin their own copy of that dependency: `packages/adapters/claude-local` (the server-side adapter) and `packages/paperclip-runner` (which builds the provider pack baked into every managed sandbox image) > - `claude-local` moved to `^0.73.0` in #12730, but `paperclip-runner` was never bumped past `0.70.0` — nothing keeps the two in sync when only one changes > - That split means a sandbox image built from `paperclip-runner`'s provider pack ships a `claude-agent-acp` the server-side adapter was never actually compatible with > - This pull request bumps `paperclip-runner`'s pin to `0.73.0`, the only version that satisfies both packages' declared ranges at once, and fixes the matching hardcoded version assertion in `docker/daytona-runner/Dockerfile` > - The benefit is one consistent, compatible `claude-agent-acp` version across both the server host and every sandbox image built from this source, instead of a silent split that only surfaces as a runtime failure ## Linked Issues or Issue Description No public issue exists for this specific split; opening directly per CONTRIBUTING.md path B, following the bug report template fields. What happened? `packages/paperclip-runner/package.json` pins `@agentclientprotocol/claude-agent-acp` at an exact `0.70.0`. `packages/adapters/claude-local/package.json` requires `^0.73.0` (added in #12730, 2026-09-02). Nobody re-synced `paperclip-runner`'s pin after that change — the two packages' dependency graphs are independent, so a bump in one doesn't propagate to the other. `paperclip-runner`'s copy is what the fleet sandbox image's provider pack actually ships, so every managed sandbox built from current source carries a `claude-agent-acp` version the server-side adapter's own declared compatibility range excludes. Expected behavior The two packages' `claude-agent-acp` pins should stay within a mutually compatible range, so a sandbox image built from this source always ships a version the server-side adapter actually supports. Steps to reproduce 1. Check `packages/adapters/claude-local/package.json`'s `@agentclientprotocol/claude-agent-acp` range (`^0.73.0`). 2. Check `packages/paperclip-runner/package.json`'s pin for the same package (`0.70.0` before this PR). 3. Note that `^0.73.0` on a `0.x` version only admits patch releases (`>=0.73.0 <0.74.0` per semver caret rules), so `0.70.0` falls outside it. Paperclip version or commit `master` as of this PR (paperclip-runner still at `0.70.0` prior to this change; claude-local's `^0.73.0` requirement landed in #12730). Deployment mode Any deployment that runs `claude_local` agents through the ACP engine against a sandbox image built from `packages/paperclip-runner`'s provider pack (managed cloud sandboxes in particular). Related PRs for context (not duplicates — none of these touch `paperclip-runner`'s pin): - #12730 — introduced the `^0.73.0` requirement in `claude-local` - #11873 — the last time `paperclip-runner`'s pin moved (`0.69.0` → `0.70.0`) - #13105 — separately made an unavailable ACP engine a hard failure instead of a silent CLI fallback, which is what turned this version split into a visible, run-blocking error rather than a quiet downgrade ## What Changed - Bump `@agentclientprotocol/claude-agent-acp` from `0.70.0` to `0.73.0` (exact pin, matching this package's existing pin style for its other agent-CLI dependencies) in `packages/paperclip-runner/package.json`. - Update the corresponding hardcoded version assertion (`test "$(claude-agent-acp --version)" = "0.70.0"`) in `docker/daytona-runner/Dockerfile` to `0.73.0`, so its own build-time check stays accurate instead of failing on the next build for an unrelated reason. - `pnpm-lock.yaml` is intentionally not included — `pr-trusted.yml`'s `Validate dependency resolution and regenerate stale lockfile` step already regenerates it for the merge tree and hands it to downstream `--frozen-lockfile` jobs as an artifact, so a manual lockfile commit here would just be stale the moment CI runs. ## Verification - `0.73.0` is a real published version on npm (confirmed via `npm view @agentclientprotocol/claude-agent-acp versions`), and it's the only version satisfying claude-local's `^0.73.0` range, so this isn't a guess at compatibility — it's the unique intersection of both packages' declared ranges. - `grep -rn "0\.70\.0" docker/ packages/paperclip-runner/package.json` after this change shows no remaining stale references to the old pin. - I did not run a full local install/test pass against a hand-updated lockfile, since regenerating one locally would conflict with leaving `pnpm-lock.yaml` untouched per the note above; CI's own lockfile-regeneration step is the intended verification path for a manifest-only dependency bump like this one. - Downstream/full verification (does a sandbox image actually built with this pin work end-to-end) is tracked separately in `paperclip-cloud` — an unrelated internal-only repo, so not linked here — where a sibling fix restores the ACP servers to the runtime `PATH` in the fleet sandbox image itself; both fixes are needed together for a working sandbox, but this PR is scoped to the version pin alone. ## Risks - Low risk: single-line dependency version bump plus a matching test-assertion update, no code changes. `0.73.0` is a patch release within claude-local's own already-declared-safe range, so there's no reason to expect it changes behavior tenants depend on. - The main risk is unknown breaking changes between `claude-agent-acp` 0.70.0 and 0.73.0 that aren't caught by the version-string assertion alone (that check only confirms the binary reports the right version, not that its behavior is unchanged). I have not audited that package's own changelog between those versions. - `docker/daytona-runner/Dockerfile` is a parallel/reference image (per its own header comment, meant to stay aligned with the private `paperclip-cloud/fleet-sandbox-image/Dockerfile`, which is out of scope here) — this PR does not touch that other Dockerfile. ## Model Used Claude Sonnet 5 (`claude-sonnet-5`), via Claude Code, with tool use (file edits, shell/git, `gh` CLI, `npm view` for version verification). No extended-thinking mode. Standard Claude Code context window. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass — see Verification: a manifest-only bump with the lockfile intentionally left to CI's own regeneration step; no local test run applicable - [x] I have added or updated tests where applicable — version-pin bump only, no new behavior to test - [x] I have updated relevant documentation to reflect my changes — none applicable - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green — pending CI run on this PR - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups — pending review - [x] I will address all Greptile and reviewer comments before requesting merge 🤖 Generated with [Claude Code](https://claude.com/claude-code) --------- Co-authored-by: Claude Sonnet 5 <noreply@anthropic.com>	2026-09-10 11:35:33 -07:00
DottaandPaperclip	889947c238	feat: add experimental native chat connectors (#13038 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - People also ask agents for work in their existing chat tools. > - Each external conversation needs one task and a current authorized source. > - Retries, Stop, and provider failures must not duplicate work or expose private data. > - The first chat PR establishes the opt-in provider and data contracts. > - This PR adds experimental channel integration and its durable control plane. > - Users can request work from connected channels and inspect delivery in Paperclip. ## Linked Issues or Issue Description Refs #13100 and #13092. This is the second of exactly two chat PRs. Foundation #13100 is merged and changed 143 files. Runner prerequisite #13092 is also merged. This PR changes 400 files against master, below the 500-file review limit. It contains no wireframe images or HTML galleries. ## What Changed - Add native Slack, GitHub, Microsoft Teams, Telegram, and Discord chat connections. Keep chat disabled unless the operator enables experimental chat connectors. Preserve the production GitHub tool connection and its normal setup path. - Bind each provider bot identity to one immutable Paperclip agent. Bind each admitted external conversation to one task. Paperclip owns tasks, runs, permissions, and audit records. - Add durable admission, per-conversation queues, questions, task controls, progress, final replies, images, files, and delivery receipts. Board comments remain internal unless explicitly sent to the channel. - Check current identity, provider reach, resource access, credentials, runtime generation, and exact source before provider effects. Keep private responses private. Never send raw reasoning, private logs, credentials, or tool arguments. - Hold uncertain sends for explicit audited resolution. Make Board Send-to-channel atomic and idempotent. Keep reconnect and setup credentials in Paperclip secret storage. - Preserve current native-runner authority across retries, lost acknowledgements, and recovery. Keep immutable input and completion contracts separate from newer user input. Receipt reconciliation cannot launch a provider. - Reconcile chat close/new ordering and provider-effect lock order. Audit resource access changes in the same transaction. Submit only the selected resource from each UI toggle so stale pages cannot undo unrelated access changes. - Drain Codex stdout before certifying process exit. Bound the drain with the existing shutdown grace. Preserve observed terminal authority without treating an undrained process as successful or reusable. - Incorporate master `018ca5da` with its ACP Stop, mobile task layout, runner packaging, and official lock changes. Preserve dedicated chat-answer continuations in both directions when ordinary queued comments are adopted after Stop. - Fence late adapter readiness behind an earlier Stop for the same run. Preserve verified cleanup for registered adapters. Handle single Stop, agent pause, duplicate Stops, and failure release without creating a false cancellation receipt. - Incorporate master's `6dd48cad4` wake-queue extraction. Preserve exact failed-chat retry authorization and lineage, retired question-source suppression, and the block on generic recovery that would discard the admitted source. Fresh deferred input retains its separate promotion path. - Incorporate master `2a05b5ed3` and its queue-admission extraction, simplified transaction ports, and separate runner CI job. Preserve exact durable receipts, actor separation, and dedicated-answer isolation through the new module. A failed receipt insert rolls back the accompanying deferred-wake merge. ## Verification Current head: `afe19299d06253cb628eb398e91d1200ea9f412a`, incorporating master `2a05b5ed3457ea33efd6895520447d1d97fe98d8`. The conflicts are resolved. This successor fixes two test-harness boundaries exposed by CI: per-case route-module preparation and actual durable-save completion before intentional runner termination. Production code and all existing test/turn deadlines are unchanged. [Exact-head Greptile review](https://github.com/paperclipai/paperclip/pull/13038#issuecomment-5587250594) is 5/5, completed September 10 at 13:20:55 UTC, with no actionable findings or open review threads. [Fresh exact-head CI](https://github.com/paperclipai/paperclip/actions/runs/34481724341) passes all 24 jobs, including Build and both required aggregates. Normal exact-head guarded merge was attempted and rejected by the remaining branch approval policy: CODEOWNER review is required and no human approval is present. Normal squash auto-merge is enabled as of September 10 at 13:36:26 UTC. Requested CODEOWNERS have been notified; no approval bypass or self-approval was used. Earlier-head results below remain historical evidence, not qualification of this successor. - Final exact-head Linux evidence: 995/995 chat integration cases; 36/36 agent-skills routes; 35/35 runner live-session cases, including real process kill/resume; 1948 runner Vitest cases with three existing benchmark/platform guards; 870/870 API-authority cases; and 104 browser cases with four existing optional skips. Rust, conformance/replay, full repository build, typecheck, canary, all server/workspace shards, and both required aggregates pass with normal CI concurrency. Earlier failed attempts remain recorded below. - Latest test-only qualification: 141/141 route/permissions/authentication cases pass in separate cold forks, with plain server types and independent review clear. The real-runner suite passes 35/35, with plain runner types and independent review clear. A controlled premature-save acknowledgement fails as expected; matching ownership/effect/process evidence, rejected saves, real turn outcome, test abort, and pre-kill liveness are covered. No local reproduction of the original CI scheduling failure is claimed. The preceding [CI run](https://github.com/paperclipai/paperclip/actions/runs/34479680858) passes 21/24 jobs, including all 995 Linux chat cases and browser aggregate (104 passed, four existing optional skips); only Build, the skills serialized shard, and the required verification aggregate fail. Its exact-head Greptile review was 5/5. Both failed job logs are retained. - Final fixture qualification: all eight focused Discord cases and all 995 chat integration cases pass. The exact modal statement/PID is observed before taking the real connection lock; the test then proves its actual blocking relationship before mutation. Original SQL execution, provider behavior, negative assertions, and 1s/15s timeouts remain unchanged. Independent review is clear and test/production hashes remain frozen. The preceding [CI attempt](https://github.com/paperclipai/paperclip/actions/runs/34477184777) passed 22 jobs, including Build/runner, typecheck, canary, all other test shards, and browser aggregate (104 passed, four existing optional skips); the two fixture failures and failed verification aggregate remain recorded, not relabeled as a pass. - Current queue-module composition: 308/308 recovery/batching/queue/Stop tests; 995/995 full chat integration; 89/89 module tests, including real PostgreSQL receipt-insert rollback; 24/24 workflow/module-boundary tests; plain server and UI types. All four actual local process/ACP browser paths pass in 1.4 minutes. Fresh databases, no skips or retries, stable reviewed source hashes. The initial boundary failure is retained; its no-op service wrapper was removed without changing recovery context or weakening the check. An exploratory standalone test-directory typecheck fails because its new upstream transformation config is not a standalone typechecking project; standard CI/build does not invoke it, and no configuration was weakened to suppress those diagnostics. - The preceding head `e02a63d462ce5d47433b0aeb632bb6fd20aab1ba` passed [all 24 CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34436462958) and exact-head Greptile review at 5/5. Required CODEOWNER review prevented its normal merge before master advanced again. - Final extracted-module composition: 307/307 recovery, batching, queue and Stop-control tests; 995/995 full chat integration; 49/49 module tests including eight PostgreSQL adapter cases; and 19/19 issue-update tests. Plain server types pass. All four actual local process/ACP browser paths pass in 1.3 minutes. Fresh databases, no skips or retries in these cohorts, frozen source hashes, and independent review clear. - The preceding head `3e4e1c1c` passes [all PR CI jobs](https://github.com/paperclipai/paperclip/actions/runs/34415826820), including Build and required `ci / verify` and `ci / e2e`. Both the original Rust failure and the previously load-sensitive lineage fixture pass with unchanged Linux concurrency. Master advanced afterward and required this reconciliation. - Final master composition: 448/448 focused UI tests, 186/186 adapter tests, 24/24 queue/control tests, and 11/11 packaging tests. Plain UI, server, shared, and adapter types pass. Token gates and diff checks pass. Independent server and UI reviews are clear. - Stop-registration regression: both real-service cases fail against exact `a95` source and pass with the fix. The full corrected recovery/control suite passes 265/265. Duplicate-owner and failed-Stop controls also pass. Plain server types pass. The readiness barrier prevents provider startup without adding an acknowledgment to an already terminal run. - Final qualification strengthens terminal-field equality and repeats both affected cases successfully on a fresh database. All four actual local process/ACP browser paths pass again in 1.3 minutes, without skips or retries. The final screenshot shows Cancelled, a paused subtree, retained input, and no error toast. - Two new actual-service regressions fail before the merge fix. They prove that queued-comment adoption could consume a dedicated chat answer or add unrelated input to that answer. The fixed four-case cohort passes, including ordinary upstream continuation and adapter Stop controls. Full recovery passes 257/257. All four actual local process/ACP Stop browser flows pass in 1.4 minutes, without skips or retries, on a fresh database. - The unchanged runner artifact was qualified with 171/171 transport tests, 870/870 API-authority tests, conformance 1/1, and replay 11/11. Six controlled reader tests prove the exit/drain repair. Its local serial Rust workspace passed 546 top-level cases plus two invoked helpers; the later passing Linux CI supplies default-concurrency evidence. - Prior exact-source full chat integration passes 995/995. Settings regressions cover concurrent stale pages, 501 destinations, pending state, rejected updates, and explicit retry. These deterministic tests do not prove live provider behavior. - Retained failed attempts and their causes are in the [qualification log](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-chat-queue-and-webhook-repair.md). The first merge adapter run timed out while macOS slept for 290 seconds. Its unchanged repeat passed with a temporary sleep guard. No assertion, deadline, or CI gate was weakened. Review commands include `pnpm --filter @paperclipai/server exec vitest run src/__tests__/heartbeat-process-recovery.test.ts src/__tests__/issue-queued-comments-routes.test.ts` and `pnpm exec playwright test --config tests/e2e/playwright.config.ts tests/e2e/acp-stop-continuation.spec.ts`. Database suites require fresh disposable databases. See the [browser runbook](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-04-chat-adapters-browser-e2e-runbook.md) for provider setup and separate live acceptance steps. ## Risks - This remains experimental. Deterministic tests and bounded live evidence do not establish every provider feature, tenant, permission layout, or media shape. Teams work-tenant qualification is still open. - Failed and uncertain provider effects remain visible and can require operator action. A transport receipt does not prove recipient visibility. - Native controller and runner artifacts must remain compatible. Preserve lease ownership, terminal authority, source binding, and quarantine during future changes. - Access and audit rows commit together, but activity notifications remain best-effort. This is not a new durable event outbox. - The PR operation does not deploy a live server, replace its runner, or change provider permissions. Remaining live qualification is documented in the [temporary handoff](https://github.com/paperclipai/paperclip/blob/afe19299d06253cb628eb398e91d1200ea9f412a/doc/plans/chat-adapters/2026-09-08-open-qualification-followups.md). ## Model Used OpenAI Codex assisted with implementation, tool execution, testing, and review. The work records `gpt-6-astra` assistance. The environment does not report a context-window size. No private reasoning traces are included. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-10 10:06:45 -05:00
Nicky LeachandPaperclip	e25a6b797f	fix(runner): close two timing windows in the capability-live suspend path (#13143 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner manages live agent sessions and their suspend path. > - A turn-timeout promise could reject before `reconcileActiveTurn()` attached its handler. > - A short provider-drain budget could reject a valid suspend on a loaded continuous-integration host. > - This pull request closes both timing windows and adds deterministic regression tests. > - The benefit is a fail-closed suspend path that does not report false failures under load. ## Linked Issues or Issue Description What happened? Capability-live tests failed under load. A turn-timeout promise could raise an unhandled rejection during a slow interrupt round trip. An idle provider drain could also exceed its one-second proof budget during suspend. Expected behavior The suspend path must observe turn-timeout rejections and allow enough time for one provider command round trip. It must still fail closed when the runner does not prove durable suspension. Steps to reproduce 1. Run the capability-live tests on a loaded four-vCPU continuous-integration host. 2. Delay a `turn/interrupt` reply beyond the turn timeout. 3. Close a live session and observe the suspend barrier. Paperclip version or commit `01b442b2926ac2010a2fcfbda6592802472ef07f` Deployment mode Built from source with the Paperclip Runner test suite. ## What Changed - Attach the turn-timeout rejection handler inside `armTurnWaiter()` at promise creation. - Remove the redundant per-call-site guard in `sendMessage()`. - Use a uniform five-second provider-drain proof budget, capped by the outer preparation deadline. - Remove the unused boolean return from the provider-turn-stop helper. - Add deterministic tests for the delayed interrupt and the short close grace period. ## Verification - `npx vitest run packages/paperclip-runner/src/live/live-session.test.ts` passed locally with zero skipped tests. - `npx vitest run packages/paperclip-runner/src/live/runnerd-codex-transport.test.ts` passed locally with zero skipped tests. - The two new tests appeared in the local run output and were not skipped. - The package type-check passed locally. - GitHub Actions must confirm the full continuous-integration suite, including `Verify Paperclip Runner`. ## Risks - The provider-drain wait now allows up to five seconds before the outer deadline caps it. - The fail-closed suspend barrier remains unchanged. - The test suite still depends on the Rust runner binary for capability-live tests. ## Model Used OpenAI Codex, GPT-5. The runtime provided tool use and code execution. The runtime did not provide a context-window value. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes: #` / `Refs: #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-10 07:04:55 -07:00
DottaandPaperclip	3b550c80fa	fix(codex): correct startup trust, history reads, and resume usage (#13110 ) ## Thinking Path > - Paperclip runs Codex locally and in remote sandboxes. > - The runner must preserve startup configuration and session identity. > - Missing project trust can disable repository configuration. > - Full-history requests use deprecated provider fields. > - Resume usage describes old work and must not become new run usage. > - This change corrects startup trust, state reads, and usage classification. ## Linked Issues or Issue Description What happened? Normal Codex runs could show repository-trust and history-deprecation warnings. Resume could report the preceding turn's token snapshot as a late-turn warning. The historical last-usage value could also be attributed to the new run. Expected behavior Trust the server-selected startup root in isolated configuration. Read lightweight provider state and paginated evidence. Use historical cumulative usage as a baseline without a new charge or user-facing warning. Steps to reproduce 1. Start a native Codex task in a selected repository. 2. Finish the turn and resume the provider thread. 3. Inspect provider notices, history requests, and per-run usage. 4. Repeat startup and cold resume inside a Daytona sandbox. Paperclip version or commit Codex CLI 0.153.4 is the pinned runtime and reproduced baseline. Replayed onto master at `6abeb6733`. Related authority work: Refs #13092. This PR retains its startup cleanup and protocol-integrity checks. Deployment mode Local source checkout and disposable Daytona sandbox. ## What Changed - Classify the exact historical resume usage event before the generic stale-turn warning. - Persist cumulative usage baselines across recovery of the same run. - Use excludeTurns on resume and lightweight thread reads. - Page turn metadata and selected turn items with cursor and identity validation. - Reject unsupported or incomplete history instead of guessing that execution is idle. - Trust the startup execution root on its host, including Git worktree trust keys. - Start Codex in that root and retain the selected sandbox profile on later turns. - Keep unrelated isolated configuration and Codex's separate hook trust policy. - Add Rust, TypeScript, accounting, native integration, and local run-log documentation. ## Verification - Codex and native-transport TypeScript: 333 passed before PR replay. - Adjacent OpenCode/ACPX driver and accounting tests: 49 passed. - Rust library, serialized: 226 passed. Native Codex integration: 72 passed, 1 ignored, plus two pagination regressions. - Repository typecheck and build passed. All repository test groups have passing coverage after fixture and resource retests; the initial monolithic command was not clean. - Fresh real Codex native browser tasks returned correct answers without the three targeted notices. Answers persisted after refresh and restart. - Real same-thread TypeScript driver tests passed locally and in Daytona, including cold resume, configuration, skills, and an approved harmless hook. - Local usage summed to 64,607 tokens. Daytona usage summed to 42,737 tokens. Each sum matched its final session total exactly. - See doc/plans/2026-09-09-codex-integration-acceptance.md for the scope and limits of the live tests. - After replay onto current master and review fixes: 334 Codex, backend, and live-session tests passed, including checkpoint serialization and real-runner process restart. TypeScript checks passed. - The native Codex integration run passed 83 tests; the large lineage test passed separately with the release runner (its debug build exceeded the test deadline). - All GitHub checks passed on the final PR head. Greptile is 5/5 with no unresolved review threads. CI regenerates the lockfile for the added TOML dependency, per repository policy. - The first server shard hit a timing-dependent duplicate-key failure in the unchanged artifact-document concurrency test. Its focused 11-test suite passed locally. One CI retry on the same head passed all 103 files and 1,405 tests (2 skipped): [retry result](https://github.com/paperclipai/paperclip/actions/runs/34398832930/job/102631274667). ## Risks - Trust applies only to the server-selected startup root and isolated configuration. Sandbox and tool permissions remain authoritative. - Codex still requires approval of individual hook hashes. This change does not bypass that policy. - Providers without the required history APIs fail explicitly. - Daytona acceptance used the production TypeScript driver. Remote Paperclip UI and remote Rust execution were not tested. - No new public API, database state, recovery policy, or UI control is included. ## Model Used OpenAI Codex, GPT-6 (`gpt-6-astra`). Used for reasoning, code edits, tool use, and test execution. The exact context-window limit is not exposed in this session. Real-provider acceptance used Codex CLI 0.153.4 with `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 15:35:18 -05:00
DottaandPaperclip	ca96e1eb0a	fix(runner): keep streaming after task completion tools (#13108 ) Keep receiving provider events after paperclip_finish, drain pending event persistence, and select the final assistant answer after the provider turn ends. Preserve cancellation, failure, and governed-wait behavior. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-09 15:22:00 -05:00
DottaandPaperclip	5cb4f061dd	fix(ui): simplify provider notices and hide completion calls (#13109 ) ## Thinking Path > - Paperclip shows agent work in task feeds. > - Native tools and provider notices appear in that feed. > - A routine completion call adds no useful action for the user. > - A provider notice needs readable text to explain its warning. > - This change hides the completion call and displays the notice summary. > - Saved run events remain available for inspection. ## Linked Issues or Issue Description What happened? The feed showed paperclip_finish as a normal tool call. Provider notices showed a generic name or a large key-value table instead of a clear warning message. Expected behavior Hide the routine completion call from the task feed. Show a warning icon, a short severity heading, and the full notice summary across the row. Steps to reproduce 1. Open a native Codex task that calls paperclip_finish. 2. Inspect its tool activity in the task feed. 3. Inspect a run with a repository-trust provider notice. Paperclip version or commit Reproduced on the implementation checkout. Replayed onto master at `6abeb6733`. The search found no duplicate PR for this display change. Deployment mode Local source checkout with native task feeds. ## What Changed - Hide paperclip_finish calls and results in task-feed adapters. - Preserve the raw events for run-log inspection. - Carry provider-notice text into the transcript. - Render notices with an icon, severity heading, and full-width summary. - Cover the display and transcript mapping with regression tests. ## Verification - The affected UI tests and the token gates passed on the implementation checkout. - Browser inspection confirmed the warning text is readable and completion calls are hidden. - Repository typecheck and build passed. Repository test groups passed after resource retests. - On this PR branch, 123 focused UI tests and the token gates passed. All GitHub checks passed; Greptile is 5/5 with no unresolved threads. ## Risks - The task feed hides one known internal tool. Raw run events remain unchanged. - Long warning text must wrap within the available width. - No provider warning classification, accounting, or recovery behavior changes here. ## Model Used OpenAI Codex, GPT-6 (`gpt-6-astra`). Used for reasoning, code edits, tool use, and test execution. The exact context-window limit is not exposed in this session. Real-provider acceptance used Codex CLI 0.153.4 with `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 15:06:20 -05:00
DottaandPaperclip	2991a59b17	fix(adapters): prevent engine fallback and preserve usable runtime defaults (#13105 ) ## Thinking Path > - Paperclip manages agents that must write work and report task outcomes through its API. > - Local adapters select an execution engine and its permission settings. > - A higher ACP Node requirement can make an unchanged installation lose access to its default engine. > - The adapter then silently selects CLI, which can change permissions and block API access. > - This pull request keeps the engine choice fixed and reports missing prerequisites before work starts. > - It also gives explicit Codex CLI runs usable defaults and keeps managed services on a supported Node runtime. ## Linked Issues or Issue Description Refs #12215. Related changes: #11792 raised the Node requirement; #13094 addressed separate runner networking behavior. This change fixes the engine-selection and managed-launcher paths. What happened? An unchanged agent could switch from ACP to CLI after an upgrade. Codex CLI then used read-only permissions with networking disabled. The run could finish without updating its task. Repeated recovery attempts used the same unavailable setup. Managed updates also skipped the Node check and did not refresh old launchers. Expected behavior An unavailable engine must fail with a clear setup error. It must not silently select another engine. Explicit CLI runs must be able to write workspace files and call the API unless the operator configures stricter settings. Managed updates must validate Node and keep child tools on that runtime. Steps to reproduce 1. Run an ACP-default agent under Node 22 after the ACP minimum rises to 24.11. 2. Leave the engine unset and disable the approval/sandbox bypass. 3. Observe the old adapter select CLI and fail to write task disposition through the API. 4. Start a managed service with an old launcher and a supervisor PATH that selects a different Node for child tools. ## What Changed - Remove automatic engine fallback for Codex, Claude, Gemini, and Kimi. Check prerequisites for default and explicit ACP selections. - Return a configuration error with proof that provider work did not start. Stop automatic continuation retries for this error. - Enable Codex ACP workspace networking at the actual turn boundary. Upstream mode presets otherwise force it off even when config.toml enables it. Preserve explicit network denial and read-only mode. - Set workspace-write and network access defaults for explicit Codex CLI runs. Preserve explicit sandbox modes, profiles, and network restrictions. - Pin the validated Node directory in managed launcher PATH. Refresh legacy launchers during installs and npm/Git updates. - Reject updates on unsupported Node. Keep update checks, dry runs, and rollback available. - Synchronize the qualified Codex ACP executable identity across server, TypeScript runner, Rust runner, and provider-pack launch paths. - Add regression tests and update engine and installation documentation. ## Verification - [Full CI passed on the final head](https://github.com/paperclipai/paperclip/actions/runs/34387099695): typecheck, build/native runner verification, all general and serialized test shards, all browser shards, release registry, canary dry run, and policy checks. - Greptile: 5/5 on `2c1d6e2815830a5cd39e36c8a082cc0c4441b6c0`, with no unresolved review findings. Security gates are green. - Full workspace typecheck and build also passed locally. The final deployed Linux build passed. - Full Codex, Claude, Gemini, and Kimi source test suites: 804 passed, 2 skipped. Installer, updater, and launcher tests: 47 passed. Installed ACP turn-boundary tests: 3 passed. ACP packaging tests: 14 passed. Focused recovery classification tests also passed. - Real Linux Codex CLI runs, both fresh and resumed, wrote a workspace file and reached the control-plane health API with the new defaults. - Explicit read-only and network-disabled control probes retained those restrictions. - A real ACP run on the final deployed Linux build wrote a file and reached the control-plane API with HTTP 200, without engine fallback. The same probe failed DNS before the turn-policy patch. - Executable-identity and installed-policy contracts: 12 passed. Affected native server tests: 197 passed. Runner factory tests: 21 passed. Rust qualification and native provider integration tests: 11 passed. - Deployed the production changes to a Linux service on Node 24.20 after a verified database backup. Health, bootstrap readiness, static UI, executable/cwd identity, and guarded restart checks passed. The restart lost no runs. - Corrected stale Kimi skill-default and Gemini remote-archive fixtures; both suites pass. ## Risks - Default or legacy auto engine settings now fail when ACP is unavailable. Operators who intend to use CLI must select it explicitly. - Codex CLI now permits workspace writes and networking by default, and ACP workspace-write turns permit networking by default. Explicit operator sandbox settings remain authoritative. - Old managed launchers keep their pinned Node until they are reinstalled under a supported runtime. An old updater cannot repair itself; the documentation gives the current installer command. - Custom service wrappers and global/source installations must configure their runtime PATH. No database migration is required. ## Model Used OpenAI Codex, based on GPT-6, with reasoning, repository inspection, shell execution, and test tools. The exact serving model identifier and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 13:27:24 -05:00
DottaandPaperclip	fac07b42ad	fix(runner): preserve durable native session authority across recovery (#13092 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The native runner carries tool results and task output to the control plane. > - A lost connection must not change which run owns a result. > - A session must not become reusable while provider output is still pending. > - This pull request adds strict recovery evidence and bounded drain barriers. > - It preserves current PRP version negotiation and session-goal support. > - The benefit is safer reuse of native sessions after a transport failure. ## Linked Issues or Issue Description Refs #13038. This is the first of two stacked pull requests. It contains the native runtime prerequisites. The second pull request contains the experimental chat-channel integration. It preserves the provider identity and typed terminal-failure contracts in #13074 and the durable recovery work in #13075. What happened? Native session failures could leave retained provider events, incomplete tool results, or warm handoff state that was not safe to reuse. A later run could observe output from an earlier authority. Expected behavior Recovery must preserve exact run, tool, process, artifact, and lease evidence. Uncertain or corrupt state must fail closed. A successful close must prove that retained provider output is settled. Steps to reproduce Run the transport and control-plane regressions. They hold and drop authenticated frames, fail durable writes, and restart fresh controllers and runner processes with retained state. Provider executables are local test fixtures. ## What Changed - Preserve pending provider cleanup and semantic-result evidence across session close and restart. - Add an authenticated warm handoff with exact old and new identities, durable receipts, and completion acknowledgement. - Drain retained provider events under the cumulative acknowledgement fence. - Reject corrupt tool-result contracts without unsafe provider replay or reusable checkpoints. - Keep ordinary PRP v1 sessions and current session-goal behavior. Require negotiated PRP v2 and acknowledged native session evidence before warm authority rotation. - Preserve late semantic inputs and exact durable result receipts until close can prove settlement. - Add transport, crash-window, artifact, checkpoint, and final-output regressions. - Deduplicate resolved execution delivery under the current issue lock. Reuse the exact existing successor after concurrent scans or a lost acknowledgement. Preserve newer operator evidence. - Persist idle provider integrity/capacity failures before process retirement, retain permanent model-rejection classification, and keep external question identifiers out of task instructions. - Expose only the context source on native status events. Keep thin dispatch projections compatible without exposing the complete context. ## Verification - Review-fix revision: 128 runtime-context/native-session tests, five idle-failure/adjacent Rust cases, 24 warm crash-window cases, three startup-notification/close cases, and five attach/backlog cases passed. The security and idle-failure cases were first reproduced failing. - Prior merged revision: runner production build, TypeScript typecheck, complete Rust workspace tests and formatting passed; 272 focused runner tests and two real PostgreSQL regressions passed. - Earlier full runner runs and CI Build failed on missing semantic-result fixture receipts, stale local provider fixture bytes, startup-notification ordering, and a confirmation-loss fixture that could accidentally send its final ACK. Each cause was reproduced and corrected without relaxing production authority or close assertions. These earlier runs are retained as failures, not represented as passing verification. - The first local repository-wide run failed before later phases because the isolated install omitted PostgreSQL's native-library aliases; it also encountered an unrelated occupied-port fixture. Those results are retained, not represented as a passing run. - Exact `335b2ee52709afb3885d4d6ebb2a3ece4b5864d6`: the complete runner suite passed 1,888 tests, with 10 existing skips. The full Rust release workspace passed with serial test scheduling. The unchanged parallel Rust run hit the five-second 300-descendant fixture deadline; that failure is retained. No deadline or assertion was relaxed. - The resolved-execution regression suite passed 57 tests, including concurrent delivery, lost acknowledgement, superseded authority, and newer operator evidence. Plain server typecheck passed. The duplicate-delivery cases were first reproduced failing. - Prior exact `335b2ee52709afb3885d4d6ebb2a3ece4b5864d6` CI passed all required jobs and Greptile reported 5/5. Its local general-server run passed 7,208 tests but failed one responsibility fixture; later phases did not run. The fixture started the next wake while its bounded handoff was active. It also used nonexistent comment IDs, which hid the current stored-message-author identity rule. The updated tests use real message authors, preserve task ownership, and await exact automatic handoffs. No production identity policy changed. - Current head `aa39275a1f300f7d1a0b16cd0885eea567cff6b0` includes current master and the native context-source projection. The focused identity/status cohort passed 27 tests and plain server typecheck passed. Fresh full repository tests, types, build, required CI, and Greptile review are pending. Final results will be updated before merge. - This is deterministic local-provider evidence. It is not a claim of complete live-provider qualification. ## Risks - This changes authenticated recovery and close ordering. The TypeScript transport and runner binary must be built from the same revision. - Failed or incomplete evidence intentionally prevents reuse and can require a fresh run. - PRP v1 ordinary/cold sessions remain supported. A v1 connection lease cannot upgrade in place. A current v2-capable runner held on a v1 lease was qualified through owned-process retirement/join, fresh bootstrap on the same old authority, v2 observation/ACK, then warm rotation. Legacy binary replacement and adopted-owner migration are not qualified by that test; rollout must not present them as automatic same-lease upgrades. - This pull request has no database migration or chat-channel activation. The second pull request keeps the channel feature experimental. ## Model Used OpenAI Codex assisted with implementation, tool execution, tests, and reconciliation. The existing implementation records OpenAI `gpt-6-astra` assistance. The current environment does not report a context-window size. No private reasoning traces are included. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [ ] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 11:02:59 -05:00
DottaandPaperclip	82f662656a	fix(runner): restore legacy Git access and independent networking (#13094 ) ## Thinking Path > - Paperclip runs agents for people with different GitHub accounts. > - Managed operations must use the intended person's eligible connection. > - A failed duplicate connection must not hide a healthy grant for the same account. > - Legacy hosts also need their existing Git configuration when managed access is not configured. > - Runner networking and local Git operations must not depend on GitHub broker availability. > - This pull request separates those policies and improves failure diagnostics. ## Linked Issues or Issue Description What happened? New runs always cleared host Git credentials and installed managed launchers. Network permission depended on GitHub environment variables. A launcher failure could stop even local `git status`. A newer unhealthy duplicate could take precedence over a healthy connection, and generic health errors were shown as reconnect requirements. Expected behavior: Use a healthy eligible managed connection for the intended account. Preserve host authentication only for unconfigured standard-trust local or SSH execution. Permit local Git during broker failures and keep network permission independent of GitHub credentials. Steps to reproduce: Configure healthy and unhealthy grants for one GitHub account, dispatch an agent, and execute Git commands. Separately run an unconfigured legacy host with existing GitHub CLI authentication. Stop the broker and run local `git status`. Paperclip version or commit: Master at `668110469`. Deployment mode: Self-hosted. Installation method: Git checkout. Agent adapters involved: Native Codex runner and shared adapter execution setup. Database mode: Existing instance database; no migration. Access context: Responsible person's managed grant, or explicitly unconfigured legacy host. Node.js version: 26.4.0 locally. Operating system: macOS development and Linux execution hosts. Relevant logs or output: Previously `GitHub credential context unavailable` hid configuration, transport, and capability errors. New diagnostics identify these categories without credential values. Additional context: Refs #13005 and #13022. Dependency provisioning is addressed separately in #13093. ## What Changed - Prefer healthy eligible grants and retry credential acquisition once for the same principal and account before starting an operation. - Preserve host Git configuration only when managed access is unconfigured on a standard-trust local or SSH target. - Project authentication mode and validated Git metadata into native runner boundaries; refresh resumed provider settings when modes change. - Enable network access through an explicit standard-trust controller decision, independently of GitHub. Omitted or restricted decisions stay disabled; replace warm providers when that decision changes. - Run local Git with cleared credentials when the managed broker fails, with specific redacted diagnostics. - Retry access-refresh conflicts once without treating concurrency as expired authorization. - Show retry instead of reconnect for transient GitHub health failures. Add optional authorization and run-diagnostic fields without a database migration. ## Verification - All latest-head CI gates are green, including typecheck, general and serialized suites, browser tests, canary, native runner verification, and build. Greptile is 5/5 with no remaining findings; the security scan passed. - Full recursive typecheck and build passed. UI token gates passed. - Full general server run: 7,110 passed, one transient socket hangup; that file passed on retry. All remaining workspace groups passed, including 5,552 UI and 478 CLI tests. The complete serialized rerun passed all 144 suites / 2,179 tests after the initial isolated timeout passed on retry. - 195 final launcher and native session tests passed, including host/managed transitions, local/remote warm network-policy changes, broker rotation, and attempts to override validated controller filesystem roots. - GitHub gateway fallback, duplicate connection selection, refresh conflicts, per-user reauthorization, and native transport/security suites passed. - Additional live native fixtures passed SSH public-key authentication and a Git credential helper in fresh and resumed host-mode sessions. An unwritable managed configuration directory preserved local Git (exit 0) while GitHub CLI failed with `configuration_directory_unavailable` (exit 4). The temporary SSH listener and keys were removed. - Applicable Rust suites passed except two timing failures under load; each failed case passed in isolation. The final environment contract test passed. - Linux native runner acceptance passed in both managed and legacy host modes: DNS, HTTPS, npm package download, fresh-worktree Git status, authenticated GitHub user lookup, repository read, and a new run continuing the same provider conversation. Managed broker outage preserved local Git and rejected authenticated access without host fallback. - Matching Linux server/runner artifacts and the separate provisioning repair are deployed to the development instance. A fresh UI-dispatched task and a new run after a server restart both passed all six shell checks through the live controller and credential broker. Both runs selected the expected healthy connection/grant and retained the same provider conversation. Neither connection was repaired or reconnected. The sandbox roots are assigned from the validated execution-target probe after ordinary bindings are merged. Regression coverage supplies forged roots and verifies they cannot override the controller paths. Networking is enabled only for an explicit `PAPERCLIP_RUNNER_NETWORK_ACCESS=enabled` controller decision; omitted values remain disabled. ## Risks Unconfigured standard-trust local and SSH runs regain access to host Git authentication resources. Managed, sandbox, plugin, and low-trust runs do not gain this fallback. Revoked managed access never falls back to another account. Deploy server and runner artifacts together; already-started operations retain their captured identity. An unauthenticated command can still fail when it requires GitHub access. ## Model Used OpenAI GPT-6 through Codex, with code editing, shell execution, tests, and browser inspection. The exact model variant and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 10:15:10 -05:00
DottaandPaperclip	6681104692	fix(runner): preserve provider identity and terminal failures (#13074 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The runner translates provider events into durable task execution. > - Provider notifications can refer to another thread or a descendant. > - Root validation treated these notifications as fatal, and later layers could lose the original failure. > - This pull request classifies event identity and preserves structured terminal failures. > - The server can then choose safe recovery without weakening tool authority. ## Linked Issues or Issue Description Refs #13038. This change incorporates the shared protocol-integrity and bounded-cleanup prerequisites from that PR. It does not include the chat feature. Related failure classification work: #13028. What happened? An informational provider notification for another thread could terminate the root session. A failed stream could then become a missing-result error and lose its cause. Expected behavior Ignore unrelated informational notices with bounded diagnostics. Reject invalid authoritative events. Preserve the original failure code and recovery meaning through cleanup. Steps to reproduce Run a native Codex task. Deliver a notification for an unrelated thread, or close the stream after a structured failure. Inspect the root outcome and recorded failure. Paperclip version or commit Reproduced before `e20010472`. This branch includes the current session-goal contract from that commit. Deployment mode Built from source. Native runner with Codex. ## What Changed - Classify root, provider-confirmed descendant, stale, unrelated, and invalid provider events. - Keep tool requests bound to their original execution authority. - Preserve typed failures through transport, session, and durable control-plane cleanup. - Keep bounded cleanup failures separate from the primary execution failure. - Add compatible shared contracts for continuation context, execution status, and explicit reconciliation. The dependent PR adds their server and UI consumers. ## Verification - Runner TypeScript and ACPX suites: 1,733 passed, 7 skipped. Node contracts: 38 passed. - Real provider-process fixtures cover 300 descendant identities across restart, the 4,096-identity capacity boundary, and rejection of continuation after terminal acknowledgement and restart. - Repository build, typecheck, and full `pnpm test:run` passed on the rebased stack (18,448 tests passed, 49 skipped). The full Rust workspace passed with `--test-threads=1`; parallel execution exposed an existing fixture port-reservation race. All latest-head CI checks passed. One unchanged artifact-document concurrency test failed on the first CI run and passed on its single rerun. - Added notification, streaming failure, protocol integrity, cleanup quarantine, and durable failure tests. ## Risks Provider event classification must retain the new session-goal behavior on master. Descendant notifications must never gain root tool authority. Shared contract fields are additive. This PR does not migrate data or start replacement provider work. ## Model Used OpenAI GPT-6 through Codex. The exact deployment ID and context window were not exposed. Used reasoning, tool use, code execution, and browser automation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-09 08:53:07 -05:00
DottaandPaperclip	2043e0c735	fix: repair runner configuration, macOS execution, and artifact galleries (#13062 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Agent adapters select a provider, a model, and a runtime. > - Runner conversion rejected existing Claude agents. The model list mixed providers. > - The native Claude runner rejected custom models and could not launch on macOS. > - This pull request fixes conversion, model selection, and verified macOS execution. > - It also groups configuration fields consistently across adapters and opens artifact images in the task gallery. > - Operators can change an agent configuration and run the selected model on their Mac. ## Linked Issues or Issue Description What happened? Converting an existing Claude agent to Paperclip Runner failed with a Codex-only restriction. ACPX Claude showed unrelated models and required `claude-sonnet-5`. Its native runtime rejected macOS. Configuration mixed common model settings with process controls. Artifact cards labeled “Open gallery” navigated to attachment URLs instead of opening the task gallery. Expected behavior Conversion keeps agent identity and compatible settings. ACPX Claude uses the normal Claude catalog and accepts typed model IDs. Codex uses the native runner. The verified Claude runtime can launch on macOS ARM64 and x64. Common configuration sections place the same fields together across adapters. Artifact images open in the shared task gallery with navigation and downloads. Steps to reproduce 1. Open the configuration of an existing Claude agent. 2. Convert it to Paperclip Runner. 3. Select ACPX Claude and a different catalog model or a typed model ID. 4. Save the agent and run a disposable task on macOS. 5. Inspect configuration and advanced run-policy controls across adapters. Paperclip version or commit The bugs were reproduced on `165ca56a22adb60e5fda56045442d9c8498116a8`. This branch was rebased onto `7ed122911`. Deployment mode Built from source. Local test-drive instance on macOS ARM64 with an isolated database. Related work: #11798 addresses unsupported ACP session options in the existing adapter path. #13048 addresses working-folder preservation. This change fixes native runner configuration and launch behavior. ## What Changed - Remove the Codex-only conversion restriction. Preserve agent identity, instructions, directories, credentials, and compatible model settings. Reset incompatible sessions while retaining history. - Show ACPX Claude and native Codex as distinct provider choices. Remove ACPX Codex from advertised configuration. Normalize legacy configurations before fresh runs without rewriting historical run descriptors. - Select model catalogs and cache entries by provider. Support refresh and typed model IDs. Pass exact Claude IDs through session creation, model changes, and recovery. - Add verified macOS ARM64 and x64 Claude SDK snapshots. Bound executable allocation and total snapshot size. Preserve package checks, dependency isolation, process ownership, cancellation, and Linux descriptor loading. - Probe local runtime readiness. Report remote platform checks as incomplete until the remote runner verifies its runtime. - Surface actual model rejection and allow correction and retry. - Repair missing ACPX goal-capability helpers exposed by the post-rebase live test. Persist and restore the optional capability without breaking session startup. - Put Agent identity first and intentionally remove the Capabilities editor, as requested. This is removal of UI editing, not relocation: preserve existing capability metadata and API compatibility without adding another editor. Use the themed select for configurable permission modes, with normal text instead of monospace. - Put model and provider under Adapter. Give environment variables their own section. Fold command and arguments under Configuration. Fold lifecycle, timeout, and interrupt grace under Advanced Run Policy. Hide single-option permission controls. - Open image and video artifact cards in the existing task gallery, including cards in the artifacts panel. Chat attachment images use the same gallery. Preserve standalone media previews and download links. ## Verification - Rebased focused UI/API/database suites: 293 tests passed. - Rebased native runtime and ACPX suites: 242 passed, 7 skipped. - Repository typecheck, build, and token gates passed for the runner changes. Gallery follow-up UI typecheck, build, and token gates also passed. - Follow-up UI suites passed (86 tests), packaging checks passed (14 tests), and the final focused runtime suites passed (126 passed, 7 skipped). - Linux container isolation and lifecycle fixtures passed before rebase (57 passed, 2 skipped). Rust ACPX provider-session tests passed after rebase (8 tests). - Browser tests completed actual Claude and native Codex tasks on macOS ARM64. They covered conversion, catalog refresh, a non-default catalog model, a typed `haiku` ID, save/reload, cancel, follow-up session continuity, invalid-model errors, and recovery. - Final-revision live tests completed a typed Claude task, a follow-up with the same provider session, and a native Codex task on macOS ARM64. - Browser tests confirmed the moved interrupt-grace field saves and survives reload. Cross-adapter tests cover Claude, Codex, Gemini, process, gateway, and schema forms. - Full local run: 7,080 passed, 30 skipped, and two timeouts. Both timeout suites passed on isolated rerun (84 tests); the failures were the plugin login-worker exit diagnostic and the runner real-server vertical slice. - Final follow-up checks: 50 registry tests and 45 snapshot/installation tests passed (6 platform-specific skips). Oversized executable rejection is covered before allocation or reading; unsupported-platform tests invoke the real installation probe. - Runner head `ddb5101c483a297f74875ab96b3c66035b002d50`: all CI gates green, including full runner verification, repository build, typecheck, general/serialized server suites, browser tests, and canary dry run. [CI run](https://github.com/paperclipai/paperclip/actions/runs/34286178670). - Greptile: 5/5 on that runner head. All four review threads resolved. Superagent, Socket, and Snyk checks green. - After snapshot hardening, another real Claude task completed on this Mac using the rebuilt runtime. - Gallery follow-up: 148 focused tests passed, covering artifact selection, shared attachment collections, deduplication, image/video cards, standalone previews, downloads, and closing. Live browser verification completed on the settings follow-up: artifact selection, 6-image pagination with wrapping, download action, and closing all stayed on the same task URL. All checks passed on gallery head `96136da58ff195bf6ca00b281eb3022ad12d7bd8`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/34287987536). Greptile returned 5/5 on that exact head with no unresolved threads. - Final settings polish: 96 focused tests, UI typecheck/build, and token gates passed. A real browser walkthrough verified readable permission options, identity placement, Capabilities removal, and permission save/reload. Original test-agent permission mode restored. All 31 checks passed on final head `e46540d6bf32bfb0566dca16b2f4a75ba437618c`: [CI run](https://github.com/paperclipai/paperclip/actions/runs/34292797886). Greptile returned 5/5 with no unresolved threads. ## Risks - Capabilities intentionally has no editable UI field after this change. Existing values remain readable and API-compatible; removing the field does not erase stored metadata. - macOS launch now copies verified package files into private snapshots. The implementation must retain isolation and clean up snapshots on exit. - Runtime provider or model changes reset the current session. Historical runs remain available. - The macOS x64 SDK executable digest was verified, but a live Intel Mac run was not available. Linux verification used container fixtures, not a real Claude task. - Remote environment tests report a warning when only the platform has been checked. They do not claim package readiness from the server host. ## Model Used OpenAI Codex, based on GPT-6. The exact served model identifier and context-window limit are not exposed in this session. Used reasoning, repository inspection, code execution, Rust and TypeScript tests, and browser automation. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass (focused suites and both timeout suites on rerun; full-run counts above) - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-08 19:10:09 -05:00
DottaandPaperclip	7ed122911b	Add end-to-end session goals to Paperclip Runner Add capability-aware slash-goal controls, durable provider goal state, PRP v2 negotiation, autonomous goal execution, and safe local session recovery. Integrate with current master, preserve provider session identity, and verify the browser goal/chat/replacement/clear workflow and unsupported-agent rejection. Co-Authored-By: Paperclip <noreply@paperclip.ing>	2026-09-08 16:18:47 -05:00
DottaandPaperclip	e095b84dab	feat(connections): connect services from native task feeds (#13058 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work > - Agents use connections to reach external services. > - A fresh native task can have no service tools installed. > - The agent needs a way to discover services and ask the responsible person for access. > - This pull request brings the existing connection-intent flow into native task execution. > - The person can connect from the task, and the agent can continue with updated tools. ## Linked Issues or Issue Description Subsystem affected Native runner tool authority, connection intents, task interactions, and shared connection setup. Problem or motivation A task that needs an unconnected service cannot finish its work. Leaving the task to configure access also loses context. A resolved request must survive a restart and resume the correct agent once. Proposed solution Expose connection discovery and access requests as server-owned native tools. Render a durable task card and use the shared setup dialog. Persist outcome delivery and start a fresh provider session after access is ready. Alternatives considered Sending the person to the Connections page adds navigation and does not solve continuation. Polling for authorization consumes runs and can create duplicate requests. Roadmap alignment This extends the existing connection-intent runtime and setup experience. It reuses the shared access model and the native runner. Related: #12345, #12347. The service-slug fix in #12906 is related but separate. Companion evaluation PR: https://github.com/paperclipai/paperclip-evals/pull/21. ## What Changed - Expose `connections_search` and `connection_request` with server-bound company, task, agent, and responsible user. Preserve the legacy entry points. - Discover catalog services and authorized custom connections. Check installation, identity, health, and executable permissions before reporting ready. - Keep pending cards through ordinary messages. Reuse requests and retire stale ownership. Put Connect at the right of Not now. - Reuse the shared setup flow in a task dialog. Keep access additive and default to the requesting agent. Recover from cancelled or blocked OAuth windows with a new-tab fallback. - Persist outcome delivery with an idempotent wake key. Resume in a fresh session and recheck ownership before dispatch. - Add native browser fixtures, offline Storybook states, server contracts, and evaluation fixtures. Update guidance and documentation. ## Verification - `pnpm build`: passed after replaying the change on current master. - `pnpm -r typecheck`: passed. - `pnpm check:token-gates`: passed. - `pnpm --filter @paperclipai/ui build-storybook`: passed. - New continuation-policy regression cases: 16 passed. - Docker-backed PostgreSQL regressions passed for requester-only OAuth access, assignment-only expiry, terminal expiry, and credential-free setup metadata. - Shared setup and task-card UI tests: 121 passed, including configured MCP reconnect URL recovery and preserving user edits across refetch. - Storybook browser checks: all 119 passed on the latest reconnect fix. - `pnpm test:run`: 4,734 tests passed in the first server group, but embedded PostgreSQL startup failures and resulting cleanup errors prevented a complete local pass. All Linux CI lanes passed on the latest reviewed commit. One external-object route test returned an unexplained 500 on the first run; it passed twice locally and the failed shard passed on retry without code changes. - Earlier feature-checkout evidence: three deterministic native browser journeys passed, including restart delivery and an actual fixture tool result. Legacy scripted coverage also passed. All 59 added stories were inspected in light and dark themes. - Live Notion testing recorded successful provider reads. The manual test used a local-trusted instance. It does not prove authenticated/cloud deployment or every provider journey. - Native browser rerun reached the embedded PostgreSQL startup limit before bootstrap, so the latest checkout’s full native browser journey remains unverified. Both OAuth page/task regression cases passed against isolated Docker-backed PostgreSQL 17. They verify no premature task access, requester-only completion, additive retries, and reconnect preservation. - Applied both new migrations twice to isolated PostgreSQL 17. Foreign keys remained intact, duplicate active delivery keys were rejected, and failed delivery records did not block retries. Reviewer path: start a fresh test drive, enable the native runner, use an agent that can perform work directly, and ask it to summarize a Notion page. Connect from the card, then verify the resumed provider call and source-linked answer. The default test-drive CEO is instructed to delegate, so it can introduce an unrelated hiring step. ## Risks - Two additive migrations create durable deliveries and a partial unique wake index. They are idempotent. The wake index can require a maintenance window on large tables because migrations run in a transaction. - OAuth and continuation cross asynchronous boundaries. Tests cover ownership changes, retries, additive access, and restart delivery; live provider behavior still varies. - The latest requester-scope fix has not yet been exercised through live OAuth. GitHub, API-key, authenticated-user, and all recovery journeys are not claimed as verified. ## Model Used OpenAI GPT-6-based Codex assisted with implementation, tests, and review using tools and code execution. The runtime does not expose the exact model version, context window, or reasoning setting. Live evaluation used `gpt-5.6-luna`; manual native testing used `gpt-5.6-sol`. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used and disclosed unavailable runtime details - [x] I have checked ROADMAP.md and confirmed this extends existing connection work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have described the issue in-PR following the feature issue template - [x] I have not referenced internal or instance-local Paperclip issues or links - [x] My branch name describes the change and contains no internal ticket id - [ ] I have run all required tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation - [x] I have considered and documented risks - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-08 15:55:26 -05:00
DottaandPaperclip	ff24578765	fix(runner): initialize Rustls crypto provider (#13023 ) ## Thinking Path > - Paperclip runs AI agents through local and remote execution adapters. > - The native runner daemon uses Rustls for secure transport. > - The production dependency graph enables the `ring` and `aws-lc-rs` crypto backends. > - Rustls cannot select a default backend when both backends are active. > - The runner daemon did not select a backend before it built a TLS client configuration. > - This pull request installs the workspace-selected `ring` provider during process startup. > - The benefit is that the runner can start reliably with the production feature graph. ## Linked Issues or Issue Description What happened? `paperclip-runnerd` exited with code 101 before it opened a provider session. Rustls reported that it could not select a process-level `CryptoProvider` because the binary included two crypto backends. Expected behavior The runner daemon must select its configured crypto provider before it creates a TLS client configuration. The daemon must start and open the provider session. Steps to reproduce 1. Build `paperclip-runnerd` with the locked production dependency graph. 2. Start the daemon through the local loopback transport. 3. Observe the Rustls provider-selection panic before this change. Paperclip version or commit `d8b958053` on `master`. Deployment mode Self-hosted server. Installation method Built from source. Agent adapter(s) involved Codex through `paperclip_runner`. Operating system Linux 7.0.0-1010-aws on aarch64. ## What Changed - Install the Rustls `ring` provider before runner setup reaches TLS initialization. - Accept an existing process-level provider as an initialized state. - Add a focused regression test for TLS builder creation and repeated initialization. ## Verification - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --bin paperclip-runnerd startup_installs_a_crypto_provider_before_tls_initialization` - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --test local_runner runnerd_startup_reports_build_metadata_without_panicking` - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --test local_runner happy_path_emits_one_result_and_one_terminal` - `cargo fmt --manifest-path packages/paperclip-runner/runner/Cargo.toml --all -- --check` - Built the debug daemon and ran `paperclip-runnerd --build-metadata` successfully. - `pnpm -r typecheck` - `pnpm build` ## Risks - Low risk. The change selects the crypto provider that the workspace already declares. - A host process can install a provider first. The runner accepts that initialized state. - No database, API, UI, telemetry, observability, or run-log contract changes. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex with model `gpt-5`. The context-window size is not exposed. The model used reasoning, repository tools, code execution, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 21:58:01 -05:00
DottaandPaperclip	1cc45086d3	feat: use the responsible person's GitHub for shared agent operations (#13005 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Several people can send instructions to the same agent and task. > - A fixed GitHub token in the provider process can keep the first person's access after another person's message is accepted. > - Task ownership cannot select credentials for each accepted instruction or preserve the identity of an operation already in progress. > - This pull request records ordered execution identity contexts and resolves credentials when managed Git, gh, or GitHub tools start. > - The benefit is automatic personal GitHub access for shared agents, with durable continuation rules and no teammate credential fallback. ## Linked Issues or Issue Description Subsystem affected Cross-cutting: orchestration, connection grants, database, runtime adapters, native runners, and run details. Problem or motivation A shared agent must use the person whose instructions it has accepted. A queued message must retain its author. A retry or approval without new instructions must retain the originating identity. GitHub must remain optional for ordinary work. Proposed solution Persist execution identity separately from task ownership. Give new processes a run-scoped broker capability and token-free managed launchers. Capture identity at operation start. Keep an explicit dedicated-agent grant as an override. Show redacted diagnostics in run details. Alternatives considered Per-task ownership, fixed provider tokens, and mutable repository author configuration do not handle accepted steering or concurrent operations. A manual account-selection action would add unnecessary setup to each turn. Roadmap alignment This completes the existing Multiple Human Users, MCP Tool Gateway & Apps, Secrets Manager, and Self-healing Runs capabilities. The implementation follows the maintainer-approved plan. Related work: Refs #12843, Refs #12907. Existing proposals #4618 and #8945 cover per-agent or per-worktree author configuration. This change instead follows the accepted human instruction across runtime types. Refs #11831 for governed personal connection delegation; this change preserves connection audience checks and does not use standing delegation as a personal credential fallback. ## What Changed - Add durable, ordered identity contexts and active run references. Preserve message authors through consolidation, steering, retries, delegation, approvals, routines, and restart. - Add an authenticated operation-time GitHub credential broker and local/remote managed git and gh launchers. Keep personal tokens out of the long-lived provider process. - Resolve GitHub gateway and server-side Git operations through the same responsible-person or dedicated-grant selection rules. - Make absent and unavailable GitHub credentials non-blocking at generic startup. Clear host and prior-person credentials. Keep anonymous Git access where supported. - Add run-detail identity history and the dedicated-account warning. Keep task ownership and queue-versus-steer decisions unchanged. - Preserve personal OAuth declarations through connection edits. Retain exact selected grants in the gateway. - Fix continuation races found during real acceptance: verify a warm owner before credential rotation, and wait for bounded durable runner suspension before the next run starts. - Make migrations replay-safe. Retain identity through agent/run deletion, remove it with its company, and clean terminal launcher directories before releasing execution environments. Document coordinated release and rollback. ## Verification - Full workspace typecheck, build, and token gates passed. The complete local suite passed in its normal test groups: 17,120 passing tests, including all 143 serialized server suites. After integrating the newly merged runner API work, full local typecheck and build passed again, along with 890 focused integration tests. All 31 checks on the integrated revision passed, including build, browser E2E, release registry, canary dry run, typecheck, security and all test suites. Greptile is 5/5 with all review threads resolved. - Current focused checks passed: 142 native executor tests, 67 runtime lifecycle tests, 9 durable identity tests, 75 credential/routine tests, 19 low-trust/resumption tests, and the executable migration replay test. - Authenticated browser acceptance with two Paperclip users and two GitHub accounts on one shared native agent passed. Real commits and pushes followed A → B accepted steering → queued A continuation in the same saved conversation. GitHub commit author and committer identities matched all three operations. Both runs succeeded and task ownership stayed unchanged. - Real GitHub MCP calls switched from A to B after accepted steering. A delegated subtask retained its originating identity across a server restart. - Disabling B's GitHub connection left ordinary work successful. Managed gh was unauthenticated and the provider had no inherited GH_TOKEN or GITHUB_TOKEN. - The browser displayed run-detail diagnostics and the exact dedicated-account warning. A final controller-restart check followed by another-person continuation retained the conversation, selected the correct GitHub login and Git author, and removed each terminal launcher directory. - Company-lifetime migration and all five previously failing CI suites passed locally (167 tests). Same-token gateway A → B → A and six broker/launcher boundary tests passed. - Remote callback, launcher, sandbox, and runtime contract tests passed. Both native and legacy Codex completed actual Daytona executions on the integrated revision ([campaign results](https://github.com/paperclipai/paperclip/actions/runs/34155056509)). The remote package-manager shim staging regression also passed locally. ## Risks - Deploy the migrations, server broker, launchers, and runner artifacts together. Existing processes finish with their original contract. New managed processes need the broker endpoint for GitHub operations. - Finish or stop new managed executions before rolling application code back. Keep the additive schema and identity history during rollback. - Scripts that require a persistent raw GH_TOKEN must use managed git, gh, or GitHub gateway tools. Run capabilities authorize code executing within that run to acquire its current identity; this is not hostile-code isolation within one execution principal. Managed commands prevent automatic credential carryover; arbitrary code deliberately copying a credential is outside that boundary. - Uncertain steering acknowledgement deliberately holds new credential acquisition until reconciliation. Already-started operations retain their captured identity. - GitHub private access and provider outages can still fail the specific operation that needs them. Dedicated grant failure does not fall back to personal access. ## Model Used OpenAI GPT-6 through Codex assisted implementation, review, shell execution, and browser acceptance. The exact model variant and context-window size are not exposed in this session. Tool use included TypeScript and Rust tests, database integration tests, GitHub CLI, and authenticated browser control. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 14:32:20 -05:00
DottaandPaperclip	5bddff0920	feat(runner): add guarded API search and call fallback (#13003 ) ## Thinking Path > - Paperclip manages AI agents and their work. > - The new runner gives agents dedicated tools for common tasks. > - Some API operations and parameters have no dedicated tool. > - Agents need a controlled way to find and use those operations. > - This pull request adds API search and calls through the real server routes. > - Existing tools remain the preferred path. The new tools are disabled by default. > - Paired tests measure correctness, tool choice, cost and time. ## Linked Issues or Issue Description Subsystem affected Paperclip Runner contracts, production tool authority and the server API catalog. Problem or motivation The runner cannot use much of the API described by the old Paperclip skill. A generic HTTP client would also let agents bypass runner control rules. Proposed solution Add `search_api` and `call_api`. Resolve calls from the mounted API catalog. Use server-held, run-bound credentials. Preserve route checks and runner lifecycle rules. Keep the tools disabled until an operator enables selected companies. Alternatives considered A dedicated tool for every endpoint would add a large initial prompt. An unrestricted HTTP tool would weaken authorization and replay controls. Roadmap alignment This extends the native runner tooling. The repository owner requested this design and implementation. The roadmap and related open PRs were checked. No duplicate API escape-hatch PR was found. ## What Changed - Register two compact fallback tools in canonical contracts and provider projections. - Build deterministic API discovery from OpenAPI, mounted experimental routes and the old skill reference. - Execute bounded JSON, text, file and download requests through authenticated HTTP routes. - Recheck active runs, company access and work modes. Block runner lifecycle, scheduling, credential and approval bypasses. Keep routine annotation collaboration available. - Retain mutation receipts. Report uncertain outcomes without blindly repeating writes. - Add a company rollout gate and a durable eval worker with complete cost accounting checks. - Record child-task creation in the activity log with the agent and run. - Add contract, authorization, file, replay and real runnerd/PRP/HTTP tests. - Document rollout gates and paid coverage limits. The companion eval repository retains immutable attempts and reports. ## Verification - Final app commit `da58370524c3626a744eec20164397c5fb6ba9ef`: all 32 checks passed; the unrelated Storybook visual check was skipped. Greptile 5/5; no unresolved review threads. - Full Linux build and recursive typecheck passed. Repository tests were run by project and serialized shard; all 143 serialized server suites passed. - Runner TypeScript: 1,599 passed, two skipped. Rust release: 451 passing test reports. Conformance and replay parity passed. The required API check passed 837 tests, including runnerd → PRP → authority → real HTTP. - Bindings cannot enable API tools without the explicit deployment flag. Unit and real-authority tests prove the default-off boundary. - The standalone API check builds and stages its own binary. It passed after existing staged and debug binaries were removed from the test container. - UI and CLI tests passed. Initial environment failures (missing jq, Docker overlay file identity, and parallel linker memory pressure) and focused passing reruns are retained. The macOS full runner suite has platform-specific failures; Linux is the qualified full-check platform. - Eval harness: 27 tests passed; existing CI discovery ran 86 tests with two unrelated skips. Credential export rejection is tested against the actual report command. - Luna and OpenRouter Sonnet each passed 60 common-workflow runs: ten workflows, three repetitions per arm, zero unnecessary API fallback. - Sonnet passed 11 selected capability/contract cases after fixes. Gemini passed three smoke cases. DeepSeek exceeded the 120-second limit and remains unqualified. - Luna's two cost flags received focused follow-up. The original flags and a later n=1 latency flag remain visible. Sonnet had no cost or latency increase above 20%. - The catalog contains 785 entries; 58 were exercised across all stages. Most operation probes remain unrun and some need additional fixtures. Authored probes do not establish successful coverage. - Total conservative accounted cost: $9.875960. Active paid-campaign time: 88.16/90 minutes. No missing accounting. Later security and harness fixes have provider-free verification; no paid validation is claimed for those revisions. - Inspect the [qualification report](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/READINESS.md) and [verification record](https://github.com/paperclipai/paperclip-evals/blob/codex/seach-call-api-tools/evals/runner-api-tools/reports/2026-09-07-production/verification.json). ## Risks - This is a broad authenticated API surface. Keep the default-off gate until an operator selects initial rollout companies. - Paid coverage is incomplete. Small regression samples do not prove all workflows are unchanged. - A timeout or server failure can follow a committed mutation. The result reports an unknown outcome and requires state inspection. - The new definitions add prompt tokens. The report retains cost flags and cache variation. - No database migration is required. - Repository rules require code-owner approval before merge. Technical CI and automated review are complete. ## Model Used OpenAI Codex based on GPT-6 assisted with code, tests and review. The exact serving model ID and context window are not exposed in this session. It used reasoning, tool calls and code execution. Eval models: `gpt-5.6-luna` with low reasoning, `openrouter/anthropic/claude-sonnet-5`, `openrouter/google/gemini-3.8-flash`, and `openrouter/deepseek/deepseek-v4-flash-0731`. Attempts retain runtime versions, model identity, usage and source provenance. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 14:14:43 -05:00
DottaandPaperclip	f6a211479f	fix: share current CLI runtimes across sandbox adapters (#12994 ) ## Thinking Path - Paperclip Runner needs its runtime preinstalled for fast sandbox startup. - Native and local adapters should launch one current CLI installation per provider. - An older global copy can shadow that installation, and exact native compatibility pins must match it. - Update the qualified releases and binary digests, expose shared CLI entrypoints from the provider pack, and prefer the image-owned bin directory. - Keep dependency installation in the image build; task startup only discovers, links, and verifies artifacts. ## Linked Issues or Issue Description What happened? Remote native startup rejected a stale global Codex, while CLI-only images lacked runnerd entirely. Expected behavior An image-baked runtime starts without uploading binaries or installing packages. All adapters share the same current provider CLI. Steps to reproduce Start a native remote task with the old global Codex and the updated runtime available only under `/opt/paperclip-runner/bin`. Paperclip version or commit Discovery behavior at `54a99d884`. Deployment mode Docker with a remote sandbox. ## What Changed - Prefer `/opt/paperclip-runner/bin`, then the user's local bin directory, then PATH. Existing metadata and version validation remains in force. - Qualify Codex 0.153.4, OpenCode 1.18.29, and Claude SDK 0.3.263 / CLI 2.1.263. Update binary digests, TypeScript/Rust checks, registry defaults, and the displayed OpenCode version together. - Share Codex and Claude's native executable with the ACP bridges through exact dependency overrides. Preserve the separately qualified ACP bridge implementations and their security patches. - Expose shared provider-pack CLI launchers; fail the pack build if Codex ACP resolves a separate Codex installation. Update the eval image's other agent CLIs to current stable releases and remove duplicate global provider installs. - Document the single-current-CLI policy in source comments and development guidance. Latest stable releases are resolved at review/build preparation and pinned; task startup never auto-updates. ## Verification - Native-session and adapter-registry suites: 158 tests passed. - Provider suites: 88 tests passed, 7 Linux-only checks skipped on macOS. One existing macOS temporary-path alias assertion passed when rerun with canonical `TMPDIR=/private/tmp`. - Package-contract and OpenCode materialization tests: 11 passed. - Full typecheck, build, and token gates passed. Rust native-provider/recovery tests: 19 passed. - Broad local suite: 5,974 passed, 23 failed, 41 skipped. Failures are in unchanged macOS workspace/path/port and connection suites; focused runtime tests pass. All latest-head Linux PR checks passed, including the full test shards, typecheck, build, runner verification, browser suites, and canary dry run. - The standalone fleet image built with one current provider CLI each and passed native Codex/Claude binary-integrity checks. A disposable Daytona sandbox reported ready in 798 ms; its baked runner completed an API-key `gpt-5.6-luna` turn in 2,430 ms and returned the expected marker with a usage receipt. No runtime artifacts were uploaded or installed. - The normal shared `codex exec` entrypoint also completed an API-key `gpt-5.6-luna` turn in 2,321 ms. - Both image builds verify the complete generated lockfile against a reviewed SHA-256 before package installation or lifecycle execution. Root lockfile changes remain CI-owned. Merge and rollout remain on hold for operator review. ## Risks - Updating provider CLIs changes their behavior for all adapters; version probes and live native smoke testing are required before image promotion. - The image-owned directory takes precedence. Its entries must launch the same shared CLI as the global PATH, not a private older/newer copy. - Application qualification pins and the deployed image must move together. No startup fallback installation is added. - No schema or authentication-policy changes. ## Model Used OpenAI GPT-6 (Codex). The session does not expose a more specific model ID or context-window size. Used reasoning, repository inspection, code execution, and browser verification. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 10:09:29 -05:00
DottaandPaperclip	54a99d8840	fix(evals): make the chat viewer the default published Evalbook (#12952 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Direct Runner evals retain evidence across model configurations. > - Evalbook already has a grid and a read-only Runner Lab chat viewer. > - Public projection stripped the view and selected a second plain result page. > - This change uses the existing viewer for public and private results. > - The data access differs, but the presentation does not. ## Linked Issues or Issue Description Refs #12931, #12945. Related open runtime-contract PR #11634 does not contain this report-only change. What happened? The public direct-eval campaign opened plain result pages. The access-controlled artifact used the chat viewer. Users could not follow the same recorded interaction from the published grid. Expected behavior Every newly generated Runner Evalbook opens the existing chat viewer. The grid and durable run history remain. Public evidence has explicit redactions. Steps to reproduce Open campaign gha-34062394019-1 from the direct-eval history. Click a result, then compare its plain page with the corresponding Actions artifact. Paperclip version or commit Reproduced at `83987210d6`. Deployment mode Static GitHub Actions artifacts and S3/CloudFront publication. Companion site-theme renderer: https://github.com/paperclipai/paperclip-evals/pull/19. This removes the Python light theme and links the same built stylesheet. ## What Changed - Add a closed public chat projection. Require mock isolation evidence before publishing recorded text. Scrub private references and withhold tool payloads, reasoning and provider state. - Validate public HTML against the exact trusted viewer shell and asset bytes. Validate the public DTO and local links. Keep CSP restrictions on outbound requests and forms. - Make the workflow render both data projections with the canonical viewer. Pass a viewer-only artifact to the trusted publisher. Reject an old renderer pin before paid execution. - Fix report-only start position, missing-state inspector, read-only controls and redaction labels. Tool evidence links select and highlight the Evidence tab even when reopened. Runner execution and the full-stack E2E workflow are unchanged. - Add a no-model report refresh command. Preserve original campaign identity, measurements and immutable history; label report revisions. - Document the single presentation and public/private evidence boundary. - Use one Runner Lab stylesheet and local fonts for the grid, Latest, test design, inventory, server gate and S3 history index. Keep static styles scoped away from live chat. - Emit exact published report/history URLs to the Actions summary and job outputs only after successful upload. Set the deployment link from that output. - Switch public Eval and Evidence panes without rendering both at once. - Add all-run history with like-for-like pass-rate and cost timelines, regression/recovery lists, exact commit links, source refs and Actions links. - Record all-attempt costs including retries. Keep provider list cost separate from estimates. Label missing coverage and historical final-only costs. - Retain all run records beyond 200, backfill a separate derived analytics projection, and exclude report refreshes from measurements. ## Verification - Focused report/publishing/projection/workflow/adapter tests: 29 passed. - Workflow Evalbook adapter tests: three passed. - Viewer unit tests: eight passed; Vite viewer build passed. - Companion renderer tests: 59 total, 57 passed, two inventory tests skipped because the expected sibling checkout is absent. - Re-rendered all 375 retained attempts from the completed campaign and validated the public bundle. Zero new model calls; 356/358 selected cells still pass. - Browser walkthrough: grid to failed chat; prompt, named tool calls, correct blocked status, visible assertions, no loading spinner or composer. Public payload redactions are explicit. - Full typecheck and build passed locally. test:run ended with 17 failed files and 19 failed tests in unrelated server/worktree areas (3772 tests passed). Latest-head CI is the final merge gate. The browser sources also typecheck with a temporary TypeScript-7-compatible path configuration; the checked-in browser config still uses removed baseUrl options and is unchanged here. - Real Chromium verification passed for passing, failing and missing-recording attempts in both the full and public bundles. It checks tool expansion, navigation, reload, read-only controls, narrow viewport visibility and the public no-network boundary. Future publications run it automatically. - Fresh live proof: three gpt-5.4-mini native Codex cases passed on the first attempt (get-task-context, create-child-task, workflow-context-document-progress); estimated total $0.00632625. Generated the full canonical report and verified all three file:// pages, all seven DevTools tabs, and evidence cross-links in Chromium. Private screenshots remain local. - Follow-up `99697c2c5`: viewer build, eight unit tests, browser token gate and browser-source typecheck (existing TS7 configuration workaround) passed. Added repeated tool-to-evidence navigation to the publication browser gate. - Site-theme follow-up: 26 publishing/security tests, 59 Python tests (57 passed, two existing skips), eight viewer unit tests and the viewer build passed. Chromium verified shared colors and grid/test-design/Latest navigation. - Re-rendered all 375 retained attempts with the shared site theme, without new provider calls. - Successful hosted publication: [refreshed Evalbook](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/campaigns/gha-34062394019-1-report-site-theme-v3/index.html) and [themed history](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/index.html). Real browser verified grid → test design → chat → All results and history → run. - Full maintained live suite completed on AWS: [Actions run 34074939112](https://github.com/paperclipai/paperclip/actions/runs/34074939112), Paperclip `856813ba3a`, evals 34e1846c06a39e641182dadce5de7ea739f657f1. All 358 cells across 11 configurations ran; 355 passed (99.2%), two behavior failures and one infrastructure failure. Nine configurations are entirely green. All 360 retained attempts were rendered using the new design and published as an immutable, zero-provider-call report refresh: [full Evalbook](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/campaigns/gha-34074939112-1-report-history-v1/index.html). The trusted master workflow ran the models; this PR's viewer rendered their results afterward. - Remaining live failures: native Codex mini did not emit the expected discovery event for lazy-unauthorized-undisclosed (no mutation occurred); GLM 5.3 scheduled a wake before approval in workflow-governed-wait; GLM 5.3 timed out on create-task-document on both attempts. No scoring rules were relaxed. - Retry-inclusive recorded estimated model cost is at least $7.067692, with usage for 357/360 attempts. Provider-reported list cost is a separate alternative (at least $14.002806), not an additive cost. Missing usage is unknown, not zero; AWS compute is excluded. - [Production history](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/index.html) now contains nine model runs and two separately labeled report refreshes. Matching full-suite comparison reports three newly failing cells and two recoveries versus the previous run. This is observed run-to-run variation, not proof of a deterministic code regression. Live HTTP checks verify the newest report link, shared theme, exact source SHAs and cost analytics. - The new full report passed Chromium checks for passing, failing and missing-recording chat pages, tool-to-Evidence links, grid/design/Latest navigation, reload, read-only controls and narrow layouts. The Mac was locked during final hosted verification; the new hosted history was checked by HTTP and generated-page browser checks, not a fresh interactive desktop walkthrough. - History follow-up: 31 publishing/security/metrics tests pass. Viewer build passes. Chromium checks desktop and narrow history pages with no document-level horizontal overflow. ### Visual verification Generated from the scrubbed completed campaign; no private provider identities or raw tool payloads are included. Full private pages were also browser-tested, but their private metadata is not published as screenshots. ![Passing replay](https://raw.githubusercontent.com/paperclipai/paperclip/c660fec08bd0492e844b1198ddcf0e6f387dd597/packages/paperclip-runner/docs/images/evalbook-chat/passed.png) ![Failed replay](https://raw.githubusercontent.com/paperclipai/paperclip/c660fec08bd0492e844b1198ddcf0e6f387dd597/packages/paperclip-runner/docs/images/evalbook-chat/failed.png) ![Missing recording](https://raw.githubusercontent.com/paperclipai/paperclip/c660fec08bd0492e844b1198ddcf0e6f387dd597/packages/paperclip-runner/docs/images/evalbook-chat/missing-recording.png) Latest shared-theme proof: ![Pass-rate and cost history](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/proofs/cost-history-sept6/history.png) ![Overview grid](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/proofs/site-theme-sept6/index.png) ![Test design](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/proofs/site-theme-sept6/test-design.png) ![Recorded chat](https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/proofs/site-theme-sept6/passed.png) ## Risks - Public chat text is newly visible, but only for the isolated mock boundary. The producer excludes raw payloads and the publisher fails closed on unknown fields, secrets, shell changes and asset substitutions. - Requires the companion canonical renderer revision and an updated RUNNER_PROTOCOL_EVALS_SHA after merge. Old pins fail before paid execution. - Existing published campaigns remain immutable. A report refresh is a separate history entry, not a new model qualification. - Successfully published the immutable site-theme refresh with the configured report-bucket SSO profile. Original run records and qualification pointers are preserved. ## Model Used OpenAI Codex, GPT-5-based coding agent with reasoning, shell and browser tools. Exact deployment model ID and context-window size are not exposed in this session. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green on `cad99dbf04` - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on `cad99dbf04` - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-07 07:47:17 -05:00
DottaandPaperclip	83987210d6	fix(runner): align direct eval provider setup with qualified runtimes (#12945 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Runner direct live evals test semantic tools against a mock control plane. > - The first complete AWS campaign exercised 358 cells. > - It exposed setup differences from the working full-stack harness. > - This pull request corrects those direct-harness differences. > - It preserves production permission defaults and the full-stack workflow. ## Linked Issues or Issue Description What happened? Native Codex cells could not find a global codex executable. ACPX denied unattended tool requests and lost valid provider usage receipts. AgentCore hit a 30-second facade timeout while its worker allows 120 seconds for delivery. Several models reported a native run result without updating the separate mock task state. What did you expect? The direct harness should use the pinned executable, explicit test permissions, and a timeout compatible with the provider delivery contract. Its instructions should explain which operation changes mock task state. Steps to reproduce Run the full Runner Direct Live Protocol Evals workflow. Baseline campaign: https://github.com/paperclipai/paperclip/actions/runs/34059009921. Paperclip version Master at `b55ce03e86`. Related public change: #12932. No duplicate fix was found. ## What Changed - Resolve native Codex from the pinned Codex ACP dependency, as the full-stack launcher does. - Select explicit unattended ACPX permissions only in the isolated direct eval harness. - Add a configurable bounded turn-admission wait. AgentCore direct evals use up to 125 seconds, capped by their turn budget. Other callers retain the current default waits. - Explain mock task-state operations separately from native run-result reporting. Keep all scoring assertions unchanged. - Bind the direct turn's scope to the current request, rather than stale shared fixture notes. A provider's end-of-turn result does not authorize an unrequested mock task completion or extra completion comment. - Normalize the qualified Claude/Codex usage semantics without double-counting reasoning or inventing unknown billable categories. Forward ACPX's persisted terminal prompt-response usage for the exact current turn; reject stale or ambiguous receipts. - Preserve the known numeric ACPX token-counter aliases through durable redaction. Continue redacting strings and credential-shaped values. A regression test reproduces the previously redacted usage before normalization. - Add regression tests and operating documentation. ## Verification - Passed Runner TypeScript build. - Passed 88 focused tests across the eval request contract, provider setup, and Runner transport. - Passed 93 focused ACPX adapter, sidecar lifecycle, and usage-accounting tests, including persisted receipt identity and missing-field regressions. - Passed 97 additional runtime-host, in-process ACPX driver, OpenCode proxy, and MCP bridge tests. - Reproduced the ACPX counter-redaction failure, then passed 36 Rust decoder/normalizer and durable-redaction tests after the fix. Credential-shaped strings and objects remain redacted. - Native Codex get-task-context passed a real provider probe with no global CLI dependency. - Local ACPX probes reached a platform startup rejection on macOS; qualification therefore used the intended AWS Linux fleet. Complete campaign 34060573948 reached 341/358 passing with zero infrastructure failures (up from 250/358 and 100 infrastructure failures). ACPX Claude reached 34/35, ACPX Codex 7/8, native Codex 34/35, and AgentCore 35/35. Remaining failures were retained in the canonical report: https://d1p6rlowie26tp.cloudfront.net/runner-protocol-evals/campaigns/gha-34060573948-1/. - Final complete campaign 34062394019 exercises the current-request scope clarification with all 358 cells; results pending. - Passed git diff --check. - Repo-wide typecheck, build, and tests are delegated to PR CI. They were not repeated on this machine. ## Risks - ACPX approval is scoped to the operator-requested isolated fixture harness. Production defaults do not change. - AgentCore admission can wait longer, but remains within the whole-turn budget. - The mock fixture has no production task lifecycle service. Explicit task-state instructions describe that boundary; they do not relax scoring. - This change does not modify the browser full-stack workflow or its test fixtures. - ACPX receipt corrections apply to all native ACPX sessions. They rely on the pinned qualified server contracts; unknown or ambiguous receipts stay unknown, and a final accounting-read error never overwrites the provider's terminal result. ## Model Used - OpenAI GPT-6 (`gpt-6-astra`) through Codex, with reasoning, tool use, and code execution. The session does not expose an exact context-window limit. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-06 17:21:12 -05:00
DottaandPaperclip	fee8d8dc39	fix(runner): repair direct live provider bootstrap (#12932 ) ## Thinking Path > - Paperclip runs AI agents through qualified provider backends. > - The direct live eval workflow builds one immutable Runner runtime for every matrix cell. > - The workflow reinstalled the packed Runner with npm. > - That install discarded pnpm patches and selected provider dependencies outside the qualified lock. > - The first pnpm deployment model also placed its virtual-store marker at the wrong level; a real deployment keeps `.pnpm` beside the scoped Runner package. > - AgentCore enforced the current context-aware harness but the direct eval CLI did not supply the production v3 runtime context that harness requires. > - This pull request preserves the qualified dependency graph, resolves the real deployment layout, and makes direct evals exercise the production runtime-context contract. > - The benefit is that live eval cells reach their provider turn with the same artifacts and context contract that Paperclip qualified. ## Linked Issues or Issue Description Refs: #12931 What happened? The full direct live eval campaign failed every ACPX cell during `session.open`. The portable runtime had an incorrect dependency root. Its npm install also discarded the qualified ACP server patches. AgentCore cells first failed because Runner enforced `aws-agentcore-harness-v1` while the provisioned stack and eval profile use `aws-agentcore-harness-context-v2`; after aligning that revision, the direct eval CLI still omitted the required v3 runtime context. Expected behavior The direct eval runtime must preserve the frozen pnpm dependency graph and patched provider bytes. Runner, server validation, OpenAPI, and the deployed AgentCore stack must use one qualification revision. Direct eval attempts must supply the same immutable native runtime-context contract as production. Steps to reproduce 1. Dispatch `Runner Direct Live Protocol Evals` from `master`. 2. Select an ACPX Claude, ACPX Codex, or AgentCore roster. 3. Observe a pre-turn provider bootstrap failure. Paperclip version or commit `d96452db059338b329b458ba8fe359fef72f1363` Deployment mode GitHub Actions on the RunsOn Linux x64 fleet. ## What Changed - Build the reusable direct-eval runtime with `pnpm deploy --prod`. - Resolve ACPX dependencies from the actual scoped-package layout of a self-contained pnpm deployment. - Align AgentCore configuration and qualification checks on `aws-agentcore-harness-context-v2`. - Materialize a minimal immutable v3 runtime context for each isolated direct eval attempt. - Add workflow, package-authority, runtime-context, Rust, and server regression coverage. - Document the qualified packaging, runtime-context, and AgentCore revision contracts. ## Verification - `pnpm --filter @paperclipai/paperclip-runner typecheck` - `pnpm --filter @paperclipai/server typecheck` - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/live/runnerd-codex-transport.test.ts` (70 tests) - `pnpm --filter @paperclipai/paperclip-runner exec vitest run src/cli/eval-session-contract.test.ts` (14 tests) - Focused Runner contract tests (36 tests) - Focused server profile tests (47 tests) - Focused Rust managed-provider and native-selector tests (19 tests) - `node --test packages/paperclip-runner/scripts/runner-protocol-eval-workflow-security.test.mjs` - `actionlint .github/workflows/runner-protocol-live-evals.yml` - A local `pnpm deploy --prod` produced both qualified ACP server digests. - A Linux reproduction of the first follow-up smoke identified the real deployment root and the missing AgentCore runtime context. ## Risks The AgentCore revision change rejects profiles that still use the obsolete v1 value. This is intentional because the provisioned context-aware harness and current eval profile use v2. Direct eval prompts now receive the same fixed runtime-context preamble as production, so behavior scores may move; that is the intended qualification surface. The workflow package layout changes, but tests assert the new entrypoint and dependency root. This change does not modify the browser full-stack E2E workflow. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex with GPT-5.6. The context-window size is not exposed in this session. The model used extended reasoning, repository tools, code execution, Docker-based Linux reproduction, and GitHub Actions diagnostics. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (for example, `docs/...` or `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-06 15:45:07 -05:00
Dotta	d96452db05	fix(runner): restore Vite 6 viewer compatibility (#12929 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Paperclip Runner includes an issue-thread viewer for direct Evalbook reports. > - The runner package uses Vite 6.4.3. > - Dependabot changed the React plugin from version 4.7.0 to version 6.1.1. > - React plugin 6.1.1 requires Vite 7 or Vite 8 package internals. > - The live evaluation workflow found this mismatch when it built the viewer on a clean Linux worker. > - This pull request restores the compatible plugin and adds the viewer build to pull request CI. > - The benefit is that CI detects this class of report-viewer build failure before a paid evaluation campaign starts. ## Linked Issues or Issue Description What happened? The direct live evaluation workflow failed before model execution. The `build:issue-thread` command could not load `@vitejs/plugin-react@6.1.1` with Vite 6.4.3. The plugin imported the unavailable `vite/internal` package path. Expected behavior The Evalbook issue-thread viewer must build from a clean frozen-lockfile installation before the live evaluation matrix starts. Steps to reproduce 1. Check out commit `165ca56a22adb60e5fda56045442d9c8498116a8`. 2. Run `pnpm install --frozen-lockfile --ignore-scripts`. 3. Run `pnpm --filter @paperclipai/paperclip-runner build:issue-thread`. 4. Observe the `ERR_PACKAGE_PATH_NOT_EXPORTED` error for `vite/internal`. Paperclip version or commit `165ca56a22adb60e5fda56045442d9c8498116a8` Deployment mode Built from source in GitHub Actions on Ubuntu. ## What Changed - Restore `@vitejs/plugin-react` 4.7.0 in the Vite 6 runner package. - Follow the repository policy: trusted PR CI regenerates and verifies the lockfile artifact, and the master refresh workflow commits the lock-only update after merge. - Build the Runner Evalbook viewer in pull request CI. ## Verification - `ci / policy`: regenerated the dependency lock artifact successfully - `pnpm --filter @paperclipai/paperclip-runner build:issue-thread` - `actionlint .github/workflows/pr-trusted.yml .github/workflows/runner-protocol-live-evals.yml` - `node --test packages/paperclip-runner/scripts/runner-protocol-eval-workflow-security.test.mjs` - `git diff --check` ## Risks Low risk. This change restores the previous React plugin major version for one package. The selected version declares support for Vite 6. Pull request CI now builds the affected viewer directly. > This bug fix does not add or change a roadmap feature. ## Model Used - OpenAI Codex with GPT-5. Tool use and code execution were enabled. The Codex app managed the context window. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-06 09:16:21 -05:00
Dotta	165ca56a22	fix(runner): scope live eval tokens to eval repo (#12911 ) ## Thinking Path > - The merged direct live eval workflow must read the private `paperclip-evals` repository at an exact commit. > - Its first hosted dispatch failed before provider execution because the GitHub App token was minted from the `paperclip` repository installation. > - GitHub returned 404 while resolving the private eval commit, proving that token did not have the required repository scope. > - Minting each short-lived token from the exact private eval repository installation supplies only the cross-repository read boundary the workflow needs. > - A workflow regression now verifies every eval-token block keeps that exact scope. ## Linked Issues or Issue Description The first default-branch run of Runner Direct Live Protocol Evals failed in its immutable eval-commit verification step with HTTP 404. No provider jobs ran and no provider spend occurred. What existing behavior does this improve? It allows the protected direct live eval workflow to verify and check out the private `paperclipai/paperclip-evals` repository. Current behavior All four eval-token blocks set `GH_REPO` to `paperclipai/paperclip`, selecting a token installation that cannot read the private eval repository. Proposed behavior Set `GH_REPO` to the exact `paperclipai/paperclip-evals` repository in authorization, catalog, matrix, and report jobs. Reason and benefit The app mints a short-lived token from the correct repository installation while the main repository continues to use its ordinary read-only workflow token. Breaking changes None. ## What Changed - Scoped all four private-eval installation tokens to `paperclipai/paperclip-evals`. - Added a regression requiring that exact scope in every token block. ## Verification - `pnpm --filter @paperclipai/paperclip-runner test:runner-protocol-eval-publish` — 15 passed. - `node --test .github/scripts/tests/get-bot-token.test.mjs` — 3 passed. - `actionlint .github/workflows/runner-protocol-live-evals.yml` — passed. - `git diff --check` — passed. ## Risks - The workflow reads a private repository. The token is still short-lived, repository-specific, masked immediately, and used only by the protected default-branch workflow. - This changes no provider execution, Runner behavior, report content, S3 publishing, or browser E2E behavior. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex on GPT-5. The exact deployment ID and context-window size are not exposed. The model used reasoning, repository inspection, code editing, GitHub Actions diagnostics, and test execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change and contains no internal instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation where applicable - [x] I have considered and documented risks above - [ ] All Paperclip CI gates are green - [ ] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-06 08:25:46 -05:00
Dotta	0c1e7504c0	fix(runner): persist warm Daytona workspaces across turns (#12904 ) ## Thinking Path > - Daytona preserves a stopped sandbox filesystem, but deleting or replacing a sandbox removes its only remote copy. > - Warm reuse therefore improves latency but cannot be Paperclip's durability boundary. > - The host execution workspace must remain authoritative after every successful turn, while same-run recovery must avoid overwriting unexported remote work. > - Result proposal, workspace export/merge, and terminal completion need a durable, replayable ordering so a crash never starts a duplicate provider turn. > - A paid browser acceptance suite must exercise both legacy Codex and Runner Codex for three real turns on one continuously warm Daytona sandbox. ## Linked Issues or Issue Description Refs #12901. Runner Codex did not previously export successful Daytona workspace changes back to the authoritative host workspace. That made warm reuse depend on Daytona's remote filesystem and left deleted/replacement sandboxes without a reliable reconstruction path. The existing paid fixture also lacked a focused three-turn continuity case for both Codex adapters. ## What Changed - Persist versioned, atomic native workspace-sync descriptors and durable seeds in `PAPERCLIP_HOME`, without credentials or a database migration. - Classify fresh, warm, replacement, and same-run-recovery workspace preparation explicitly; ambiguous lease/root/digest evidence fails closed. - Finalize native workspace export/merge after semantic result proposal and before run completion, with idempotent replay that never submits a second provider turn. - Surface legacy Codex workspace restoration failures instead of masking them, while preserving an earlier provider error when both fail. - Keep healthy reusable Daytona leases warm for legacy and native adapters, stamp finalized workspace generations, and retain existing cleanup behavior for per-turn or unhealthy leases. - Preserve Runner Codex's provider process/session across warm turns, including bounded post-terminal tail draining and exact authority rotation. - Add the exact paid `daytona-warm-continuity` matrix: - `legacy-codex × daytona × warm-three-turn` - `runner-codex × daytona × warm-three-turn` - Drive all three turns through the browser, verify ordered file continuity and stable lease/workspace/runtime identities, capture per-turn timings, and delete the sandbox immediately after assertions. - Document `pnpm test:e2e:runner -- --suite daytona-warm-continuity`; no package script was added. ## Verification - `pnpm typecheck` — passed, including migration safety (no migration added) - Focused server/runner Vitest coverage — 144 passed - `pnpm test:e2e:runner:unit` — 114 passed - `pnpm test:e2e:runner:typecheck` — passed - `pnpm --filter @paperclipai/paperclip-runner test:codex` — 66 passed, 1 helper ignored - `native-session-executor.test.ts` — 139 passed, including safe fail-closed cleanup after remote runner identity capture failure - Paid local browser acceptance, exact post-rebase Linux/amd64 runner binary: - Runner Codex — passed in 1.7m; 3 runs; lease outcomes `created, resumed, resumed`; 10/10 matchers; cleanup passed - Legacy Codex — passed in 2.7m; 3 runs; lease outcomes `created, resumed, resumed`; 10/10 matchers; cleanup passed - [Protected paid GitHub Actions campaign](https://github.com/paperclipai/paperclip/actions/runs/34026735033) against `7da42a91b95fa7fb2df126668ef7e37afb3b2b9d` — passed 2/2: - Runner Codex — 3 runs; lease outcomes `created, resumed, resumed`; evidence and cleanup passed - Legacy Codex — 3 runs; lease outcomes `created, resumed, resumed`; evidence and cleanup passed - Merge/enforcement, S3 history, and Pages publication jobs passed - Paid result artifacts were scanned for both provider credentials; neither secret was present. - Current PR checks — 31 passed, 1 expected Storybook skip; Greptile 5/5; Superagent security scan passed - `git diff --check origin/master...HEAD` — passed - Confirmed no `package.json`, lockfile, migration, or SQL changes. ## Risks - Workspace synchronization now sits on the terminal-success path, so a remote export failure deliberately prevents false success. Retryable state retains its lease/seed; loss of the only unexported remote copy fails closed. - Warm provider reuse has strict identity and quiescence checks. Mismatched or ambiguous evidence blocks reuse rather than risking concurrent provider work. - The paid suite incurs Daytona and Codex cost only in the existing protected scheduled/manual workflow and explicitly destroys its sandbox after each cell. ## Model Used OpenAI Codex with GPT-5 agentic reasoning, repository inspection, real browser E2E execution, Rust/TypeScript test execution, and GitHub Actions diagnostics. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either linked an existing issue or described the issue in-PR - [x] I have not referenced internal/instance-local Paperclip issues or links - [x] My branch name contains no internal ticket id - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have documented the dedicated suite invocation without adding a package script - [x] I have considered and documented risks above - [x] All Paperclip CI gates are green on the current revision - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups on the current revision - [x] I will address all reviewer comments before requesting merge	2026-09-06 08:16:12 -05:00
Dotta	af8439a70b	feat(runner): restore direct live eval campaigns and reports (#12909 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - The Runner executes agents through native and managed provider drivers. > - The direct live eval layer had drifted from the current Runner contracts. > - The old local workflow did not provide a complete parallel campaign or durable report history. > - The Runner also needed current native OpenCode and OpenRouter qualification. > - This pull request restores the direct campaign, corrects the runtime gaps that the campaign found, and adds safe hosted Evalbook history. > - The benefit is repeatable model comparison against an immutable Runner and eval source revision. ## Linked Issues or Issue Description Refs #11297 Refs #11634 What existing behavior does this improve? This improves the direct live `paperclip-runner` eval workflow, provider execution contract, and static Evalbook reporting path. Current behavior The direct evals do not have one maintained full campaign on current `master`. OpenCode has no qualified multi-model OpenRouter roster. Parallel provider bursts can compact committed events before the transport observes them. Local reports do not have a separate safe S3 history index. Proposed behavior Run one immutable roster-plus-case matrix. Use the shared paid AWS runner fleet. Keep raw artifacts access-controlled. Publish a sanitized canonical Evalbook report under the separate `runner-protocol-evals` S3 prefix. Keep immutable campaign directories plus root history, latest, and latest-green pointers. Reason and benefit Maintainers can compare native Codex, native OpenCode, ACPX, Claude Managed, and AWS AgentCore behavior over time. They can inspect failures without mixing this direct protocol layer with browser full-stack E2E. Breaking changes None. The new workflow and S3 prefix are additive. The existing Runner full-stack E2E workflow and report remain separate. ## What Changed - Added a trusted two-shard direct live workflow for up to 393 roster-plus-case cells. - Reused the numeric actor allowlist, protected paid environment, and RunsOn fleet controls from Runner full-stack E2E. - Added immutable Runner and eval revision resolution, exact credential boundaries, bounded retries, and cost ceilings. - Added a public report projection that removes sessions, transcripts, tool payloads, state, traces, raw failures, remote profile identities, and credential-shaped values. - Added additive S3 history under `runner-protocol-evals`, with immutable campaigns and mutable root index pointers. - Added native OpenCode model injection and current OpenRouter pricing contracts. - Fixed direct eval completion, workflow execution, semantic discovery, warm-attach state reset, executable binding, and event-burst handling. - Kept Runner browser full-stack E2E behavior and publication separate. - Documented local and hosted direct eval operation. ## Verification - `pnpm --filter @paperclipai/paperclip-runner test:runner-protocol-eval-publish` — 15 passed. - `pnpm --filter @paperclipai/paperclip-runner build:typescript` — passed. - `actionlint .github/workflows/runner-protocol-live-evals.yml .github/workflows/runner-full-stack-e2e.yml` — passed. - Local current matrix at the revision in [paperclip-evals#17](https://github.com/paperclipai/paperclip-evals/pull/17) — 323 cells across 10 enabled configurations completed. - Final local current matrix — 269 passed, 11 behavior failures, and 43 expected macOS-only ACPX platform failures. - Targeted Runner checks — 13/13 eval-session tests, 15/15 publisher/security tests, and package typecheck passed; complete PR CI is green, including all browser E2E shards. ## Risks - Paid live campaigns can consume provider budget. Actor authorization, exact per-cell ceilings, protected environments, and explicit schedule enablement bound this risk. - Public reports can leak provider data. The workflow publishes only a separately projected report and validates every file before upload. - The new workflow cannot publish until it is present on the default branch. This pull request does not change the existing `runner-full-stack-e2e` publication path. - The campaign is large. It uses two GitHub matrices and caps combined concurrency at the shared fleet limit. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used OpenAI Codex on GPT-5. The exact deployment ID and context-window size are not exposed. The model used reasoning, code editing, browser inspection, repository tools, and live provider execution. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 20:18:11 -05:00
DottaandPaperclip	3796c6f259	fix(connections): project GitHub identity into sandbox runners (#12907 ) ## Thinking Path > - Paperclip is the open source app people use to manage AI agents for work. > - Managed GitHub connections resolve a responsible user's or dedicated agent's identity into an audited, run-scoped credential projection. > - An enrolled instance could retain a hidden managed setup method after Cloud stopped advertising it, producing a blank, disabled setup step. > - Native runner processes also dropped the resolved GitHub projection before the provider shell, so `gh` and Git could not use the selected identity in Daytona. > - Daytona already provides the outer isolation boundary. Applying Codex's inner Linux sandbox there both duplicated containment and failed because nested user namespaces are unavailable. > - This change repairs setup fallback, carries only the bounded GitHub projection across each runner boundary, and allows only a controller-selected managed sandbox transport to act as the outer sandbox. ## Linked Issues or Issue Description What happened? An enrolled self-hosted instance could show a blank GitHub setup step when its managed profile was unavailable. Separately, a native Codex run in Daytona could resolve a managed GitHub connection on the Paperclip host but lose it before the provider shell. Once projected, Codex's nested sandbox failed before commands could run because Daytona does not expose the user-namespace operation used by the inner sandbox. Expected behavior Setup must select an advertised customer method when the managed method is unavailable. A Daytona run must receive the exact managed GitHub identity selected for that run, support `gh` and HTTPS Git, and rely on Daytona as its outer sandbox without weakening local or SSH execution. Steps to reproduce 1. Enroll a self-hosted instance while Cloud does not advertise the managed GitHub profile and open GitHub setup. 2. Observe the blank second step and disabled action. 3. Configure a native Codex agent with a Daytona environment and a responsible-user GitHub grant. 4. Run `gh api user` or HTTPS Git from the agent shell. 5. Observe missing GitHub environment projection or nested-sandbox startup failure. Paperclip version or commit The setup bug reproduces on `1dceee9a4`; the runner proof was developed from the same branch and verified at the latest head below. Deployment mode Self-hosted Paperclip enrolled with Paperclip Cloud, using the Daytona sandbox-provider plugin and native Paperclip runner. ## What Changed - Wait for connector enrollment hydration, retain a hidden managed method only while enrollment is needed, and otherwise select an advertised customer fallback. - Add a single bounded GitHub credential-environment projection for `GH_TOKEN`, `GITHUB_TOKEN`, the process-only Git helper token, GitHub commit identity, and at most 32 controller-generated Git config entries. - Forward that projection through the durable controller, Codex app-server transport, and Rust provider child without placing token values in arguments or config. - Allow Codex shell inheritance only for the exact projected GitHub keys and enable provider network access only when the managed credential exists. - Derive outer-sandbox authority exclusively from a managed `sandbox` transport; strip the same flag from configured, host, local, and SSH environments. - Define a named external-sandbox permission profile that Codex resolves to `dangerFullAccess` for default-mode Daytona turns while plan mode remains read-only. - Add regression tests for setup fallback, credential projection, local/SSH/sandbox authority separation, provider forwarding, and permission-profile selection. ## Verification - `pnpm exec vitest run ui/src/pages/apps/AppsConnect.test.tsx` — 96 passed. - `pnpm exec vitest run src/drivers/codex/codex-security-config.test.ts src/drivers/codex/app-server-transport.test.ts src/control-plane/durable-prp-control-plane.test.ts` from `packages/paperclip-runner` — 31 passed. - Focused native-session executor tests — 3 passed. - `pnpm --filter @paperclipai/paperclip-runner typecheck` — passed. - `pnpm --filter @paperclipai/server typecheck` — passed. - `cargo test --manifest-path packages/paperclip-runner/runner/Cargo.toml --locked -p paperclip-runner-core --lib` — 194 passed. - Real Codex app-server configuration probe accepted `paperclip-runner-external-sandbox` and reported `sandbox.type=\"dangerFullAccess\"` while using the named profile. - [Signed Daytona image workflow](https://github.com/paperclipai/paperclip/actions/runs/33995270328) built commit `86571f7997e7100e47bd131aac1f1e773112a0ce`; the isolated environment was pinned to `sha256:ecef21105f8de382d75787e59439d936be239b77ae74a31c8ed3a17cde39b023`. - Live isolated Daytona proof passed: the three projected token variables were non-empty and equal; the host-scoped Git credential helper returned the same token without printing it; `gh api user` resolved `cryppadotta`; authenticated `git ls-remote https://github.com/paperclipai/paperclip.git HEAD` returned `1dceee9a4e75b13456760bb54c752deb2dba1d79`; no repository mutation occurred. - The persisted 28,476-byte run log contains no GitHub token shape, bearer header, credential-bearing URL, or private-key marker. - Latest-head pull-request CI and reviews provide the remaining full-suite gate. ## Risks - This deliberately gives shell Git and `gh` access to the run's resolved GitHub identity. It is the audited class-3 behavior required by the GitHub connection design and is outside per-tool Ask-first controls. - The credential source is the trusted broker projection, which overwrites configured environment values. The helper is scoped to HTTPS `github.com`, revalidates protocol and host, and never places its token in command arguments, URLs, or files. - Managed Daytona sandboxes become the containment boundary for default-mode provider commands. Local and SSH targets retain the inner Codex workspace sandbox, and plan mode remains read-only everywhere. > For core feature work, check [`ROADMAP.md`](ROADMAP.md) first and discuss it in `#dev` before opening the PR. Feature PRs that overlap with planned core work may need to be redirected — check the roadmap first. See `CONTRIBUTING.md`. ## Model Used - OpenAI Codex, GPT-5, with reasoning, browser control, shell access, and code execution. The product did not expose the context-window size. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge --------- Co-authored-by: Paperclip <noreply@paperclip.ing>	2026-09-05 17:35:21 -05:00
Dotta	1dceee9a4e	fix(runner): persist warm Daytona workspaces (#12901 ) ## Thinking Path > - Paperclip manages AI agent work and the execution state for each task. > - Remote agents run in sandbox environments such as Daytona. > - Daytona keeps files while a sandbox is stopped, but deletion removes those files. > - Runner Codex did not copy successful remote workspace changes back to the host workspace. > - A warm sandbox could therefore hide data loss until Daytona replaced or deleted the sandbox. > - This pull request makes the host workspace durable after every successful turn and keeps verified reusable sandboxes warm. > - The benefit is reliable multi-turn work across warm reuse, restart, stop, and sandbox replacement. ## Linked Issues or Issue Description What happened? A successful native Codex turn in Daytona could leave workspace changes only in the remote sandbox. A later warm turn appeared to work because it reused that filesystem. A replacement sandbox could start from stale host data and lose the successful changes. Expected behavior Paperclip must merge each successful remote turn into the authoritative host workspace before it completes the run. A verified warm lease may reuse its remote files. A replacement lease must reconstruct the exact durable workspace seed. Steps to reproduce 1. Run Codex in a reusable Daytona environment. 2. Write a file during one successful turn. 3. Replace the Daytona sandbox before the next turn. 4. Observe that the next turn can start without the prior file on the unpatched code. Related remote workspace foundation: #10070. ## What Changed - Added explicit `host_current`, `durable_seed`, and `adopt_remote` workspace preparation modes. - Added atomic, versioned native workspace descriptors and seed archives under `PAPERCLIP_HOME`. - Added real native sandbox export and three-way host merge before terminal result completion. - Added workspace-only recovery after a proposed result. Recovery does not submit another provider turn or consume the provider retry budget. - Added fail-closed handling when a sandbox with unexported changes is gone. - Kept healthy reusable Daytona sandboxes started for legacy Codex and Runner Codex. - Kept the Runner Codex process and provider session across verified warm turns. - Added the paid `daytona-warm-continuity` browser suite. It contains exactly the legacy Codex and Runner Codex cells. Each cell performs three measured turns. - Documented `pnpm test:e2e:runner -- --suite daytona-warm-continuity`. No package script was added. - Added no database migration. The metadata format is backward compatible and idempotent. ## Verification - `pnpm typecheck` - `pnpm test:e2e:runner:unit` — 114 passed - Native workspace, finalizer, session, and environment tests — 232 passed - Daytona provider tests — 150 passed - Workspace staging and merge tests — 98 passed - Runner transport tests — 63 passed - Legacy Codex restore tests — 5 passed - Rust format and compile checks pass through root typecheck - The paid Daytona suite was not run locally because the required Daytona, OpenAI, and immutable image credentials are not present. ## Risks - The main risk is an incorrect workspace identity or merge after a crash. Durable descriptors bind the run, workspace, lease, provider lease, local root, remote root, and baseline digest. Ambiguous evidence fails closed. - The host merge may conflict with concurrent host edits. The existing three-way merge and exclusion rules handle this case and surface failures. - A deleted sandbox cannot recover unexported bytes. Paperclip now blocks with `workspace_sync_out_unrecoverable` instead of reporting success or rerunning the provider. - There is no database migration. Descriptor writes and recovery are atomic and idempotent. ## Model Used OpenAI Codex with GPT-5. The run used agentic reasoning, repository inspection, code execution, test execution, Git, and GitHub CLI tools. ## Checklist - [x] I have included a thinking path that traces from project context to this change - [x] I have specified the model used (with version and capability details) - [x] I have checked ROADMAP.md and confirmed this PR does not duplicate planned core work - [x] I have searched GitHub for duplicate or related PRs and linked them above - [x] I have either (a) linked existing issues with `Fixes: #` / `Closes #` / `Refs #` OR (b) described the issue in-PR following the relevant issue template - [x] I have not referenced internal/instance-local Paperclip issues or links (only public GitHub `#NNN` / `github.com/paperclipai/paperclip` URLs) - [x] My branch name describes the change (e.g. `docs/...`, `fix/...`) and contains no internal Paperclip ticket id or instance-derived details - [x] I have run tests locally and they pass - [x] I have added or updated tests where applicable - [x] I have updated relevant documentation to reflect my changes - [x] I have considered and documented any risks above - [x] All Paperclip CI gates are green - [x] Greptile is 5/5 with no open P2s, recommendations, or follow-ups - [x] I will address all Greptile and reviewer comments before requesting merge	2026-09-05 13:00:57 -05:00

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